Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G42910 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 1.1e-193 679.9 348 100.0
AT2G44040 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 2.4e-190 668.7 348 98.3
Carub.0004s2659 Capsella rubella HOM05D004037 ORTHO05D004744 1.1e-185 653.3 351 94.6
CARHR139200 Cardamine hirsuta HOM05D004037 ORTHO05D004744 6.6e-180 634.0 351 93.2
Thhalv10001534m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 7.1e-174 614.0 345 91.6
Sp4g26120 Schrenkiella parvula HOM05D004037 ORTHO05D004744 3.9e-172 608.2 349 90.5
C03p29380 Brassica napus HOM05D004037 ORTHO05D004744 5.6e-171 604.4 349 90.8
A03p24640 Brassica napus HOM05D004037 ORTHO05D004744 7.4e-171 604.0 349 90.0
BraA03t11670Z Brassica rapa HOM05D004037 ORTHO05D004744 1.1e-169 600.1 346 90.2
BolC3t15285H Brassica oleracea HOM05D004037 ORTHO05D004744 5.3e-169 597.8 346 90.8
BcaC01g05190 Brassica carinata HOM05D004037 ORTHO05D004744 4.5e-168 594.7 349 89.7
BcaB01g03335 Brassica carinata HOM05D004037 ORTHO05D004744 7.1e-166 587.4 349 88.3
A04p33160 Brassica napus HOM05D004037 ORTHO05D004744 5.7e-163 577.8 351 87.2
BcaB06g29352 Brassica carinata HOM05D004037 ORTHO05D004744 1.1e-161 573.5 347 87.0
BraA04t18775Z Brassica rapa HOM05D004037 ORTHO05D004744 2.4e-161 572.4 342 88.6
BolC4t28586H Brassica oleracea HOM05D004037 ORTHO05D004744 4.1e-161 571.6 342 88.0
AL5G42050 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 1.2e-160 570.1 351 84.9
AT3G59890 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 1.5e-160 569.7 351 84.3
C04p70860 Brassica napus HOM05D004037 ORTHO05D004744 2.0e-160 569.3 342 87.7
CARHR170220 Cardamine hirsuta HOM05D004037 ORTHO05D004744 1.9e-158 562.8 351 82.9
Aa31LG10G14130 Aethionema arabicum HOM05D004037 ORTHO05D004744 7.2e-158 560.8 351 82.9
Aa31LG1G25710 Aethionema arabicum HOM05D004037 ORTHO05D004744 7.9e-157 557.4 348 81.9
THA.LOC104804380 Tarenaya hassleriana HOM05D004037 ORTHO05D004744 4.3e-155 551.6 351 80.9
Thhalv10006083m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 5.3e-153 544.7 351 81.2
Carub.0005s2663 Capsella rubella HOM05D004037 ORTHO05D004744 1.2e-152 543.5 345 81.7
BcaC02g07140 Brassica carinata HOM05D004037 ORTHO05D004744 1.9e-150 536.2 354 82.5
BcaB06g29511 Brassica carinata HOM05D004037 ORTHO05D004744 5.5e-142 508.1 348 79.6
Gorai.001G202100 Gossypium raimondii HOM05D004037 ORTHO05D004744 9.1e-137 490.7 343 72.9
Gohir.D07G181200 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.2e-136 490.3 343 72.9
Gohir.A07G173900 Gossypium hirsutum HOM05D004037 ORTHO05D004744 3.5e-136 488.8 343 72.3
Duzib093G0613 Durio zibethinus HOM05D004037 ORTHO05D004744 5.0e-135 485.0 343 71.7
Atru.chr12.1746 Acer truncatum HOM05D004037 ORTHO05D004744 3.2e-134 482.3 338 72.5
Ciclev10020914m.g Citrus clementina HOM05D004037 ORTHO05D004744 4.2e-134 481.9 328 73.5
Gorai.007G347100 Gossypium raimondii HOM05D004037 ORTHO05D004744 9.4e-134 480.7 343 69.4
Gohir.A11G301700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.6e-133 479.9 343 69.7
ClCG09G010780 Citrullus lanatus HOM05D004037 ORTHO05D004744 1.4e-132 476.9 276 83.7
MELO3C013171.2 Cucumis melo HOM05D004037 ORTHO05D004744 1.8e-132 476.5 276 83.7
Thecc.05G172500 Theobroma cacao HOM05D004037 ORTHO05D004744 6.7e-132 474.6 306 77.1
Manes.05G207900 Manihot esculenta HOM05D004037 ORTHO05D004744 2.6e-131 472.6 276 83.0
CsaV3_7G021780 Cucumis sativus L. HOM05D004037 ORTHO05D004744 3.3e-131 472.2 276 82.6
Gohir.D11G316700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 3.3e-131 472.2 338 68.9
Sed0007542 Sechium edule HOM05D004037 ORTHO05D004744 5.7e-131 471.5 276 82.2
Sed0020358 Sechium edule HOM05D004037 ORTHO05D004744 1.7e-130 469.9 295 79.0
QL10p064641 Quercus lobata HOM05D004037 ORTHO05D004744 2.8e-130 469.2 275 81.8
TWI63G1426 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 2.8e-130 469.2 299 77.3
CiPaw.01G202600 Carya illinoinensis HOM05D004037 ORTHO05D004744 4.8e-130 468.4 300 76.0
QL10p065764 Quercus lobata HOM05D004037 ORTHO05D004744 6.3e-130 468.0 275 81.5
Thecc.01G117800 Theobroma cacao HOM05D004037 ORTHO05D004744 1.4e-129 466.8 304 75.7
COL.COLO4_19183 Corchorus olitorius HOM05D004037 ORTHO05D004744 1.8e-129 466.5 298 78.5
TWI34G0723 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 5.3e-129 464.9 277 80.1
Gohir.D11G317300 Gossypium hirsutum HOM05D004037 ORTHO05D004744 2.0e-128 463.0 336 68.5
CANSAT01G0494 Cannabis sativa HOM05D004037 ORTHO05D004744 3.5e-128 462.2 330 71.8
MD15G1142500 Malus domestica HOM05D004037 ORTHO05D004744 1.7e-127 459.9 300 75.7
PGR042G3458 Punica granatum HOM05D004037 ORTHO05D004744 5.0e-127 458.4 342 68.4
FvH4_2g00280 Fragaria vesca HOM05D004037 ORTHO05D004744 8.5e-127 457.6 340 69.1
Prupe.7G270700 Prunus persica HOM05D004037 ORTHO05D004744 1.5e-126 456.8 276 80.4
Prupe.6G152500 Prunus persica HOM05D004037 ORTHO05D004744 1.9e-126 456.4 341 67.2
RcHm_v2.0_Chr2g0084421 Rosa chinensis HOM05D004037 ORTHO05D004744 2.5e-126 456.1 276 80.4
Duzib128G0968 Durio zibethinus HOM05D004037 ORTHO05D004744 3.2e-126 455.7 295 76.6
TPR.G5068 Trifolium pratense HOM05D004037 ORTHO05D004744 5.5e-126 454.9 306 74.5
Nitab4.5_0000245g0260 Nicotiana tabacum HOM05D004037 ORTHO05D004744 1.2e-125 453.8 299 73.6
Phvul.001G003100 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 2.1e-125 453.0 354 66.9
GSVIVG01038260001 Vitis vinifera HOM05D004037 ORTHO05D004744 2.1e-125 453.0 307 73.9
Sc06g0007930 Simmondsia chinensis HOM05D004037 ORTHO05D004744 2.7e-125 452.6 310 72.9
Glyma.16G028900 Glycine max HOM05D004037 ORTHO05D004744 3.6e-125 452.2 351 67.0
Medtr8g028145 Medicago truncatula HOM05D004037 ORTHO05D004744 6.1e-125 451.4 355 66.5
Nn3g17600 Nelumbo nucifera HOM05D004037 ORTHO05D004744 6.1e-125 451.4 305 73.4
Ah.06g182910 Amaranthus hybridus HOM05D004037 ORTHO05D004744 8.0e-125 451.1 277 79.8
FAN24G1991 Fragaria x ananassa HOM05D004037 ORTHO05D004744 8.0e-125 451.1 276 79.7
Actinidia39245 Actinidia chinensis HOM05D004037 ORTHO05D004744 6.8e-124 448.0 298 72.5
PSO675G6334 Papaver somniferum HOM05D004037 ORTHO05D004744 6.8e-124 448.0 313 70.6
VMungo1383G1316 Vigna mungo HOM05D004037 ORTHO05D004744 6.8e-124 448.0 354 66.4
Ah.04g165670 Amaranthus hybridus HOM05D004037 ORTHO05D004744 1.2e-123 447.2 277 78.7
FAN19G0379 Fragaria x ananassa HOM05D004037 ORTHO05D004744 1.2e-123 447.2 296 75.3
AUR62016240 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.5e-123 446.8 277 78.7
Solyc01g098380.4 Solanum lycopersicum HOM05D004037 ORTHO05D004744 1.5e-123 446.8 295 75.3
PSO541G3258 Papaver somniferum HOM05D004037 ORTHO05D004744 2.0e-123 446.4 311 70.7
Lj3g0014190 Lotus japonicus HOM05D004037 ORTHO05D004744 2.6e-123 446.0 307 73.0
Ca_23565_v3 Cicer arietinum L. HOM05D004037 ORTHO05D004744 4.4e-123 445.3 352 66.5
RcHm_v2.0_Chr2g0126841 Rosa chinensis HOM05D004037 ORTHO05D004744 4.4e-123 445.3 276 78.6
Hund02101 Selenicereus undatus HOM05D004037 ORTHO05D004744 4.4e-123 445.3 325 69.2
Hma1.2p1_0150F.1_g066850 Hydrangea macrophylla HOM05D004037 ORTHO05D004744 5.7e-123 444.9 299 71.6
Aqoxy2G03110 Aquilegia oxysepala HOM05D004037 ORTHO05D004744 9.8e-123 444.1 274 78.5
PGSC0003DMG400028592 Solanum tuberosum HOM05D004037 ORTHO05D004744 9.8e-123 444.1 276 77.9
Actinidia14627 Actinidia chinensis HOM05D004037 ORTHO05D004744 1.7e-122 443.4 304 70.4
CAN.G134.227 Capsicum annuum HOM05D004037 ORTHO05D004744 1.7e-122 443.4 276 78.3
AUR62032781 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.7e-122 443.4 275 78.9
TAR636G3090 Trochodendron aralioides HOM05D004037 ORTHO05D004744 1.7e-122 443.4 337 67.4
Hund23277 Selenicereus undatus HOM05D004037 ORTHO05D004744 2.8e-122 442.6 296 73.3
Glyma.07G060300 Glycine max HOM05D004037 ORTHO05D004744 3.7e-122 442.2 305 71.8
Haze_11114 Corylus avellana HOM05D004037 ORTHO05D004744 1.1e-121 440.7 295 74.6
Cc03_g11000 Coffea canephora HOM05D004037 ORTHO05D004744 1.4e-121 440.3 309 71.8
EL10Ac2g02395 Beta vulgaris HOM05D004037 ORTHO05D004744 3.1e-121 439.1 332 67.2
EL10Ac6g13735 Beta vulgaris HOM05D004037 ORTHO05D004744 5.4e-121 438.3 274 77.4
Phvul.010G108900 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 9.1e-121 437.6 354 65.8
Cpa.g.sc182.24 Carica papaya HOM05D004037 ORTHO05D004744 1.2e-120 437.2 321 70.7
Lalb_Chr10g0100171 Lupinus albus HOM05D004037 ORTHO05D004744 1.6e-120 436.8 358 65.4
arahy.Tifrunner.gnm1.ann1.FPGW6Q Arachis hypogaea HOM05D004037 ORTHO05D004744 5.9e-120 434.9 307 71.3
MBI18_g24142_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 5.9e-120 434.9 274 76.3
Lju470A2T32 Lonicera japonica HOM05D004037 ORTHO05D004744 1.0e-119 434.1 276 77.2
Psat4g089800 Pisum sativum HOM05D004037 ORTHO05D004744 1.3e-119 433.7 276 77.9
arahy.Tifrunner.gnm1.ann1.X3ZCQR Arachis hypogaea HOM05D004037 ORTHO05D004744 2.9e-119 432.6 307 71.0
CDE02G2837 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 1.1e-118 430.6 274 75.9
Lsat_1_v5_gn_3_17660 Lactuca sativa HOM05D004037 ORTHO05D004744 1.1e-118 430.6 276 74.3
HanXRQChr02g0032821 Helianthus annuus HOM05D004037 ORTHO05D004744 1.9e-118 429.9 276 75.7
Potri.017G001900 Populus trichocarpa HOM05D004037 ORTHO05D004744 5.5e-118 428.3 276 76.8
Migut.M01184 Erythranthe guttata HOM05D004037 ORTHO05D004744 7.2e-118 427.9 300 70.0
vmacro05805 Vaccinium macrocarpon HOM05D004037 ORTHO05D004744 7.2e-118 427.9 272 75.4
CDE05G0441 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 1.2e-117 427.2 272 76.1
Peaxi162Scf00071g00719 Petunia axillaris HOM05D004037 ORTHO05D004744 4.7e-117 425.2 265 78.5
MSTRG.7308 Avicennia marina HOM05D004037 ORTHO05D004744 2.3e-116 422.9 319 68.0
Migut.M00539 Erythranthe guttata HOM05D004037 ORTHO05D004744 3.0e-116 422.5 300 69.3
Oeu016121.2 Olea europaea HOM05D004037 ORTHO05D004744 5.2e-116 421.8 274 74.8
ECA246G0926 Erigeron canadensis HOM05D004037 ORTHO05D004744 3.4e-115 419.1 315 66.0
CSS0028639 Camellia sinensis var. sinensis HOM05D004037 ORTHO05D004744 4.4e-115 418.7 278 70.5
PSO339G4618 Papaver somniferum HOM05D004037 ORTHO05D004744 4.4e-115 418.7 274 73.0
DCAR_002599 Daucus carota HOM05D004037 ORTHO05D004744 7.5e-115 417.9 340 62.9
HPP92_022643 Vanilla planifolia HOM05D004037 ORTHO05D004744 7.5e-115 417.9 274 73.0
PSO384G4791 Papaver somniferum HOM05D004037 ORTHO05D004744 3.1e-113 412.5 274 71.9
AUR62028616 Chenopodium quinoa HOM05D004037 ORTHO05D004744 4.1e-113 412.1 281 72.6
Potri.007G145900 Populus trichocarpa HOM05D004037 ORTHO05D004744 4.1e-113 412.1 301 66.8
ATR0743G110 Amborella trichopoda HOM05D004037 ORTHO05D004744 1.6e-112 410.2 274 70.8
AUR62032340 Chenopodium quinoa HOM05D004037 ORTHO05D004744 2.7e-112 409.5 283 72.1
Os02g0436400 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 2.9e-111 406.0 306 65.4
Cfa008527 Carpinus fangiana HOM05D004037 ORTHO05D004744 8.6e-111 404.4 295 68.8
Zm00001eb176170 Zea mays HOM05D004037 ORTHO05D004744 5.6e-110 401.7 294 65.6
Lj6C283G4 Lonicera japonica HOM05D004037 ORTHO05D004744 2.1e-109 399.8 275 73.1
SalBow8G4021 Salvia bowleyana HOM05D004037 ORTHO05D004744 1.2e-107 394.0 279 69.2
Sabra17G0005900 Salix brachista HOM05D004037 ORTHO05D004744 2.0e-107 393.3 315 64.8
unitig_37.g12156 Utricularia gibba HOM05D004037 ORTHO05D004744 8.3e-106 387.9 283 67.1
HanXRQChr05g0133541 Helianthus annuus HOM05D004037 ORTHO05D004744 1.8e-105 386.7 263 71.9
Os03g0245100 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 1.2e-104 384.0 274 67.9
Oeu050828.1 Olea europaea HOM05D004037 ORTHO05D004744 2.7e-104 382.9 306 64.1
SGA_v2.0_scaffold22G09788 Striga asiatica HOM05D004037 ORTHO05D004744 1.0e-103 380.9 299 65.9
SEGI_29918 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 8.6e-103 377.9 294 61.9
Nn048s41912 Nelumbo nucifera HOM05D004037 ORTHO05D004744 5.8e-99 365.2 269 68.8
Sopen01g041950 Solanum pennellii HOM05D004037 ORTHO05D004744 7.8e-96 354.8 243 72.8
Pp3c15_7380 Physcomitrium patens HOM05D004037 ORTHO05D004744 1.6e-93 347.1 317 56.8
SMO347G0499 Selaginella moellendorffii HOM05D004037 ORTHO05D004744 2.3e-92 343.2 274 59.9
CBR_g41668 Chara braunii HOM05D004037 ORTHO05D004744 1.9e-89 333.6 298 57.4
Peaxi162Scf00434g00730 Petunia axillaris HOM05D004037 ORTHO05D004744 1.2e-88 330.9 186 85.5
BcaB01g03344 Brassica carinata HOM05D004037 ORTHO05D004744 2.2e-82 310.1 330 60.0
Mapoly0033s0134 Marchantia polymorpha HOM05D004037 ORTHO05D004744 6.4e-82 308.5 282 57.8
Dinv24475 Davidia involucrata HOM05D004037 ORTHO05D004744 1.3e-79 300.8 212 69.8
Cre14.g627850 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 2.5e-78 296.6 278 54.0
PRCOL_00006631 Prasinoderma coloniale HOM05D004037 ORTHO05D004744 7.3e-78 295.0 273 51.3
Nitab4.5_0001165g0010 Nicotiana tabacum HOM05D004037 ORTHO05D004744 6.2e-77 292.0 210 67.6
FAN20G0369 Fragaria x ananassa HOM05D004037 ORTHO05D004744 8.1e-77 291.6 187 77.0
MCO16G413 Micromonas commoda HOM05D004037 ORTHO05D004744 1.2e-75 287.7 288 54.2
Gohir.D09G124433 Gossypium hirsutum HOM05D004037 ORTHO05D004744 4.0e-68 262.7 239 60.7
Peaxi162Scf00434g00733 Petunia axillaris HOM05D004037 ORTHO05D004744 1.3e-66 257.7 218 63.8
Peaxi162Scf00434g00740 Petunia axillaris HOM05D004037 ORTHO05D004744 1.6e-64 250.8 174 74.1
Gorai.006G143300 Gossypium raimondii HOM05D004037 ORTHO05D004744 8.1e-61 238.4 224 58.9
Actinidia11426 Actinidia chinensis HOM05D004037 ORTHO05D004744 3.2e-57 226.5 159 70.4
Nn048s41913 Nelumbo nucifera HOM05D004037 ORTHO05D004744 1.2e-56 224.6 123 86.2
Lsat_1_v5_gn_9_123180 Lactuca sativa HOM05D002510 ORTHO05D007210 1.3e-47 194.5 175 58.9
Zm00001eb398800 Zea mays HOM05D004037 ORTHO05D004744 1.6e-45 187.6 190 51.1
AagrBONN_evm.TU.Sc2ySwM_368.1842 Anthoceros agrestis HOM05D004037 ORTHO05D004744 8.5e-42 175.3 187 50.8
FvH4_2g00640 Fragaria vesca HOM05D004037 ORTHO05D004744 2.5e-38 163.7 90 84.4
AagrBONN_evm.TU.Sc2ySwM_368.1728 Anthoceros agrestis HOM05D004037 ORTHO05D004744 3.1e-36 156.8 138 59.4
Cre16.g656300 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 2.1e-32 144.1 280 32.9
PSO451G0001 Papaver somniferum HOM05D004037 ORTHO05D004744 2.7e-32 143.7 77 85.7
MBI01_g38182_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 3.2e-25 120.2 75 78.7
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 1.2e-24 118.2 68 83.8
RhsimUnG0159300 Rhododendron simsii HOM05D004037 ORTHO05D004744 1.2e-24 118.2 189 41.3
MD02G1000400 Malus domestica HOM05D004037 ORTHO05D004744 1.6e-24 117.9 89 66.3
AagrBONN_evm.TU.Sc2ySwM_152.2 Anthoceros agrestis HOM05D004037 ORTHO05D004744 2.2e-21 107.5 164 40.2
ATR0716G071 Amborella trichopoda HOM05D004037 ORTHO05D004744 3.5e-19 100.1 66 78.8
AagrBONN_evm.TU.Sc2ySwM_344.5552 Anthoceros agrestis HOM05D004037 ORTHO05D004744 1.2e-14 85.1 83 53.0
SEGI_36179 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 7.7e-11 72.4 179 30.2
AUR62041665 Chenopodium quinoa HOM05D006904 ORTHO05D008439 5.5e-09 66.2 81 44.4


User provided reference genes

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