Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G42810 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 3.2e-130 468.4 228 100.0
AT2G43940 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 8.9e-125 450.3 228 96.5
Carub.0004s2650 Capsella rubella HOM05D004249 ORTHO05D005015 3.9e-120 434.9 228 92.1
Thhalv10001619m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 6.4e-115 417.5 228 88.2
CARHR139110 Cardamine hirsuta HOM05D004249 ORTHO05D005015 1.5e-111 406.4 228 86.4
Sp4g26030 Schrenkiella parvula HOM05D004249 ORTHO05D005015 2.9e-107 392.1 229 82.5
Aa31LG1G25630 Aethionema arabicum HOM05D004249 ORTHO05D005015 6.0e-105 384.4 221 81.9
BraA04t18772Z Brassica rapa HOM05D004249 ORTHO05D005015 1.9e-103 379.4 229 79.5
A04p33130 Brassica napus HOM05D004249 ORTHO05D005015 2.5e-103 379.0 229 79.5
BcaC02g07142 Brassica carinata HOM05D004249 ORTHO05D005015 8.1e-102 374.0 229 77.7
BolC4t28585H Brassica oleracea HOM05D004249 ORTHO05D005015 8.1e-102 374.0 229 77.7
C04p70830 Brassica napus HOM05D004249 ORTHO05D005015 2.0e-100 369.4 229 76.4
BcaB06g29508 Brassica carinata HOM05D004249 ORTHO05D005015 5.1e-96 354.8 229 74.7
BcaB06g29349 Brassica carinata HOM05D004249 ORTHO05D005015 1.8e-93 346.3 203 80.8
Sp4g26020 Schrenkiella parvula HOM05D004249 ORTHO05D005015 3.9e-88 328.6 192 78.1
THA.LOC104802342 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 2.1e-86 322.8 194 74.7
THA.LOC104804276 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 1.8e-85 319.7 210 69.5
BcaC02g12352 Brassica carinata HOM05D004249 ORTHO05D005015 3.8e-83 312.0 196 74.0
C04p04870 Brassica napus HOM05D004249 ORTHO05D005015 3.8e-83 312.0 196 74.0
BolC4t22117H Brassica oleracea HOM05D004249 ORTHO05D005015 3.8e-83 312.0 196 74.0
FAN26G1858 Fragaria x ananassa HOM05D004249 ORTHO05D005015 1.1e-82 310.5 213 67.1
Prupe.7G269600 Prunus persica HOM05D004249 ORTHO05D005015 2.1e-81 306.2 206 67.0
A05p04090 Brassica napus HOM05D004249 ORTHO05D005015 1.0e-80 303.9 196 72.4
BraA05t19396Z Brassica rapa HOM05D004249 ORTHO05D005015 1.0e-80 303.9 196 72.4
Eucgr.A00430 Eucalyptus grandis HOM05D004249 ORTHO05D005015 5.1e-80 301.6 191 70.7
PGR042G1833 Punica granatum HOM05D004249 ORTHO05D005015 6.7e-80 301.2 219 66.2
Ciclev10024361m.g Citrus clementina HOM05D004249 ORTHO05D005015 8.7e-80 300.8 203 69.0
Atru.chr3.2004 Acer truncatum HOM05D004249 ORTHO05D005015 1.5e-79 300.1 198 69.2
Cpa.g.sc151.2 Carica papaya HOM05D004249 ORTHO05D005015 3.3e-79 298.9 190 70.0
FvH4_1g00240 Fragaria vesca HOM05D004249 ORTHO05D005015 9.7e-79 297.4 198 67.7
RcHm_v2.0_Chr2g0084541 Rosa chinensis HOM05D004249 ORTHO05D005015 9.7e-79 297.4 217 63.1
MD15G1143500 Malus domestica HOM05D004249 ORTHO05D005015 2.2e-78 296.2 206 66.0
Potri.017G007000 Populus trichocarpa HOM05D004249 ORTHO05D005015 2.8e-78 295.8 197 66.5
QL10p064195 Quercus lobata HOM05D004249 ORTHO05D005015 4.8e-78 295.0 214 63.6
GSVIVG01038246001 Vitis vinifera HOM05D004249 ORTHO05D005015 4.8e-78 295.0 220 60.5
Cfa008510 Carpinus fangiana HOM05D004249 ORTHO05D005015 1.8e-77 293.1 220 60.9
Sed0024580 Sechium edule HOM05D004249 ORTHO05D005015 4.1e-77 292.0 221 61.5
Haze_11142 Corylus avellana HOM05D004249 ORTHO05D005015 5.3e-77 291.6 220 60.5
Actinidia34567 Actinidia chinensis HOM05D004249 ORTHO05D005015 6.9e-77 291.2 219 62.6
Hma1.2p1_0872F.1_g231130 Hydrangea macrophylla HOM05D004249 ORTHO05D005015 6.9e-77 291.2 196 66.8
MBI10_g45897_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 6.9e-77 291.2 225 61.3
BcaB02g08886 Brassica carinata HOM05D004249 ORTHO05D005015 1.2e-76 290.4 178 77.5
Cpa.g.sc151.3 Carica papaya HOM05D004249 ORTHO05D005015 1.5e-76 290.0 194 68.0
Duzib093G0712 Durio zibethinus HOM05D004249 ORTHO05D005015 2.0e-76 289.7 238 58.0
Haze_11140 Corylus avellana HOM05D004249 ORTHO05D005015 4.5e-76 288.5 220 59.5
Cc03_g16020 Coffea canephora HOM05D004249 ORTHO05D005015 5.9e-76 288.1 206 65.5
Thecc.05G001900 Theobroma cacao HOM05D004249 ORTHO05D005015 5.9e-76 288.1 216 61.6
Migut.G00862 Erythranthe guttata HOM05D004249 ORTHO05D005015 1.7e-75 286.6 209 63.6
AUR62002468 Chenopodium quinoa HOM05D004249 ORTHO05D005015 2.9e-75 285.8 237 57.8
Manes.01G010300 Manihot esculenta HOM05D004249 ORTHO05D005015 5.0e-75 285.0 197 65.5
Gorai.006G186800 Gossypium raimondii HOM05D004249 ORTHO05D005015 8.5e-75 284.3 233 57.5
PSO541G6333 Papaver somniferum HOM05D004249 ORTHO05D005015 1.1e-74 283.9 195 65.1
PSO675G2456 Papaver somniferum HOM05D004249 ORTHO05D005015 1.1e-74 283.9 195 64.6
Peaxi162Scf01205g00038 Petunia axillaris HOM05D004249 ORTHO05D005015 1.1e-74 283.9 193 65.8
GSVIVG01038247001 Vitis vinifera HOM05D004249 ORTHO05D005015 1.9e-74 283.1 219 59.4
Os06g0153900 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 2.5e-74 282.7 200 64.0
Aqoxy5G00067 Aquilegia oxysepala HOM05D004249 ORTHO05D005015 7.2e-74 281.2 193 64.8
Sopen08g005580 Solanum pennellii HOM05D004249 ORTHO05D005015 7.2e-74 281.2 206 62.1
BcaC02g12353 Brassica carinata HOM05D004249 ORTHO05D005015 1.2e-73 280.4 201 62.7
C04p04840 Brassica napus HOM05D004249 ORTHO05D005015 1.2e-73 280.4 201 62.7
CAN.G607.4 Capsicum annuum HOM05D004249 ORTHO05D005015 1.2e-73 280.4 206 61.7
FAN28G1175 Fragaria x ananassa HOM05D004249 ORTHO05D005015 1.2e-73 280.4 184 68.5
BcaB06g29506 Brassica carinata HOM05D004249 ORTHO05D005015 1.6e-73 280.0 201 62.7
Cpa.g.sc151.4 Carica papaya HOM05D004249 ORTHO05D005015 1.6e-73 280.0 192 65.6
Sabra17G0007900 Salix brachista HOM05D001637 ORTHO05D002178 1.6e-73 280.0 205 62.9
MSTRG.9267 Avicennia marina HOM05D004249 ORTHO05D005015 2.7e-73 279.3 196 64.3
BcaC02g07143 Brassica carinata HOM05D004249 ORTHO05D005015 2.7e-73 279.3 192 65.1
A05p04060 Brassica napus HOM05D004249 ORTHO05D005015 6.1e-73 278.1 201 62.2
CDE07G0873 Ceratophyllum demersum HOM05D004249 ORTHO05D005015 6.1e-73 278.1 196 64.3
PSO675G8665 Papaver somniferum HOM05D004249 ORTHO05D005015 6.1e-73 278.1 192 65.1
THA.LOC104804252 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 6.1e-73 278.1 194 64.4
C04p70820 Brassica napus HOM05D004249 ORTHO05D005015 7.9e-73 277.7 192 64.6
PGSC0003DMG400025227 Solanum tuberosum HOM05D004249 ORTHO05D005015 7.9e-73 277.7 206 61.7
PSO675G2958 Papaver somniferum HOM05D004249 ORTHO05D005015 1.0e-72 277.3 196 63.8
CsaV3_4G029860 Cucumis sativus L. HOM05D004249 ORTHO05D005015 1.4e-72 276.9 211 63.0
QL10p064299 Quercus lobata HOM05D000004 ORTHO05D000002 1.4e-72 276.9 181 66.9
Dinv24754 Davidia involucrata HOM05D004249 ORTHO05D005015 1.8e-72 276.6 207 63.3
Solyc08g014600.4 Solanum lycopersicum HOM05D004249 ORTHO05D005015 3.0e-72 275.8 193 63.7
unitig_0.g2413 Utricularia gibba HOM05D004249 ORTHO05D005015 3.0e-72 275.8 203 62.6
TAR633G0865 Trochodendron aralioides HOM05D004249 ORTHO05D005015 3.9e-72 275.4 184 68.5
vmacro05005 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 3.9e-72 275.4 211 61.1
AT2G43910 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 6.7e-72 274.6 192 64.6
CARHR139100 Cardamine hirsuta HOM05D004249 ORTHO05D005015 6.7e-72 274.6 192 65.1
SalBow3G0617 Salvia bowleyana HOM05D004249 ORTHO05D005015 6.7e-72 274.6 214 58.4
Sp4g26000 Schrenkiella parvula HOM05D004249 ORTHO05D005015 6.7e-72 274.6 192 64.6
PSO675G1470 Papaver somniferum HOM05D004249 ORTHO05D005015 1.1e-71 273.9 192 65.1
AL4G42780 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 1.5e-71 273.5 192 65.1
PSO675G5594 Papaver somniferum HOM05D004249 ORTHO05D005015 2.0e-71 273.1 192 64.6
Sp4g26010 Schrenkiella parvula HOM05D004249 ORTHO05D005015 2.0e-71 273.1 192 64.1
SEGI_12768 Sequoiadendron giganteum HOM05D004249 ORTHO05D005015 2.0e-71 273.1 222 56.8
PSO541G3219 Papaver somniferum HOM05D004249 ORTHO05D005015 2.5e-71 272.7 195 63.6
Thhalv10001612m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 5.7e-71 271.6 192 64.6
Aa31LG1G25620 Aethionema arabicum HOM05D004249 ORTHO05D005015 9.7e-71 270.8 192 64.6
Carub.0004s2647 Capsella rubella HOM05D004249 ORTHO05D005015 3.7e-70 268.9 192 64.6
AUR62023721 Chenopodium quinoa HOM05D004249 ORTHO05D005015 3.7e-70 268.9 193 65.3
ATR0743G017 Amborella trichopoda HOM05D004249 ORTHO05D005015 1.4e-69 266.9 192 64.6
Oeu064015.2 Olea europaea HOM05D004249 ORTHO05D005015 3.1e-69 265.8 191 62.3
BcaB02g08885 Brassica carinata HOM05D004249 ORTHO05D005015 1.5e-68 263.5 197 64.5
DCAR_027496 Daucus carota HOM05D004249 ORTHO05D005015 4.5e-68 261.9 185 63.8
Hund12312 Selenicereus undatus HOM05D004249 ORTHO05D005015 4.5e-68 261.9 218 56.4
BolC4t28584H Brassica oleracea HOM05D004249 ORTHO05D005015 5.9e-68 261.5 182 64.3
QL10p064222 Quercus lobata HOM05D000009 ORTHO05D000116 7.7e-68 261.2 191 62.3
AT2G43920 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 1.7e-67 260.0 192 59.4
BraA04t18771Z Brassica rapa HOM05D004249 ORTHO05D005015 2.2e-67 259.6 182 63.7
A04p33120 Brassica napus HOM05D004249 ORTHO05D005015 3.8e-67 258.8 182 63.2
FAN23G1087 Fragaria x ananassa HOM05D004249 ORTHO05D005015 6.5e-67 258.1 228 55.7
BraA05t19394Z Brassica rapa HOM05D004249 ORTHO05D005015 1.4e-66 256.9 191 60.2
Carub.0004s2648 Capsella rubella HOM05D004249 ORTHO05D005015 1.4e-66 256.9 192 59.9
EL10Ac3g06159 Beta vulgaris HOM05D004249 ORTHO05D005015 1.9e-66 256.5 190 62.6
AUR62002469 Chenopodium quinoa HOM05D004249 ORTHO05D005015 1.9e-66 256.5 205 58.0
SGA_v2.0_scaffold37G14935 Striga asiatica HOM05D004249 ORTHO05D005015 2.5e-66 256.1 192 60.9
CSS0044272 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 5.5e-66 255.0 170 68.2
BcaB02g08894 Brassica carinata HOM05D004249 ORTHO05D005015 2.3e-64 249.6 193 59.6
Mapoly0115s0024 Marchantia polymorpha HOM05D004249 ORTHO05D005015 5.1e-64 248.4 204 56.9
Lj6A284T20 Lonicera japonica HOM05D004249 ORTHO05D005015 2.0e-63 246.5 232 53.9
PSO541G5503 Papaver somniferum HOM05D004249 ORTHO05D005015 9.7e-63 244.2 182 59.9
C04p04860 Brassica napus HOM05D004249 ORTHO05D005015 1.3e-62 243.8 251 48.2
Thhalv10019674m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 1.7e-62 243.4 182 59.9
TWI15G0032 Tripterygium wilfordii HOM05D004249 ORTHO05D005015 4.8e-62 241.9 206 55.8
BolC4t22116H Brassica oleracea HOM05D004249 ORTHO05D005015 1.8e-61 240.0 191 57.6
AagrBONN_evm.TU.Sc2ySwM_117.2259 Anthoceros agrestis HOM05D004249 ORTHO05D005015 4.1e-61 238.8 208 54.3
BcaB02g08889 Brassica carinata HOM05D004249 ORTHO05D005015 1.5e-60 236.9 201 56.2
Os03g0843800 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 3.8e-59 232.3 230 49.6
SMO144G0018 Selaginella moellendorffii HOM05D004249 ORTHO05D005015 5.0e-59 231.9 193 56.0
CiPaw.01G201200 Carya illinoinensis HOM05D004249 ORTHO05D005015 5.5e-58 228.4 196 57.1
BcaB06g29507 Brassica carinata HOM05D004249 ORTHO05D005015 3.3e-55 219.2 178 56.7
Nitab4.5_0007944g0050 Nicotiana tabacum HOM05D004249 ORTHO05D005015 1.3e-54 217.2 192 55.2
Nitab4.5_0000013g0070 Nicotiana tabacum HOM05D004249 ORTHO05D005015 1.7e-54 216.9 195 53.3
BcaB02g08891 Brassica carinata HOM05D004249 ORTHO05D005015 2.2e-54 216.5 177 58.8
PSO541G3414 Papaver somniferum HOM05D004249 ORTHO05D005015 2.8e-54 216.1 192 54.7
PSO541G0314 Papaver somniferum HOM05D004249 ORTHO05D005015 5.3e-53 211.8 151 66.2
Gohir.A09G169300 Gossypium hirsutum HOM05D004249 ORTHO05D005015 1.7e-51 206.8 173 55.5
HPP92_011584 Vanilla planifolia HOM05D004249 ORTHO05D005015 3.2e-50 202.6 145 61.4
Nn1g09449 Nelumbo nucifera HOM05D004249 ORTHO05D005015 5.5e-50 201.8 144 63.2
THA.LOC104824126 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 2.0e-47 193.4 124 71.0
CSS0037089 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 2.6e-47 193.0 162 59.3
BolC8t49376H Brassica oleracea HOM05D004249 ORTHO05D005015 5.7e-47 191.8 212 50.9
Gohir.D09G165000 Gossypium hirsutum HOM05D004249 ORTHO05D005015 2.8e-46 189.5 233 44.6
Pp3c2_32550 Physcomitrium patens HOM05D004249 ORTHO05D005015 6.3e-46 188.3 181 49.2
C09p12990 Brassica napus HOM05D004249 ORTHO05D024151 5.4e-45 185.3 206 51.0
BolC7t41877H Brassica oleracea HOM05D004249 ORTHO05D005015 1.0e-43 181.0 220 48.6
C02p63480 Brassica napus HOM05D004249 ORTHO05D005015 6.5e-43 178.3 180 54.4
BolC4t22114H Brassica oleracea HOM05D004249 ORTHO05D005015 7.2e-42 174.9 123 63.4
COL.COLO4_19904 Corchorus olitorius HOM05D004249 ORTHO05D005015 1.4e-40 170.6 111 70.3
MCO07G181 Micromonas commoda HOM05D004249 ORTHO05D005015 1.1e-34 151.0 207 40.1
COL.COLO4_14412 Corchorus olitorius HOM05D001637 ORTHO05D002178 1.6e-33 147.1 196 40.8
PRCOL_00002738 Prasinoderma coloniale HOM05D004249 ORTHO05D005015 5.7e-31 138.7 201 38.8
C08p17510 Brassica napus HOM05D004249 ORTHO05D005015 1.8e-29 133.7 75 82.7
vmacro00720 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 6.6e-27 125.2 82 67.1
C08p48990 Brassica napus HOM05D004249 ORTHO05D005015 1.5e-26 124.0 185 43.2
AUR62023720 Chenopodium quinoa HOM05D004249 ORTHO05D005015 7.3e-26 121.7 96 57.3
Cre04.g215600 Chlamydomonas reinhardtii HOM05D004249 ORTHO05D005015 1.6e-25 120.6 206 36.4
BolC3t15278H Brassica oleracea HOM05D004249 ORTHO05D005015 4.7e-25 119.0 151 47.0
C03p29320 Brassica napus HOM05D004249 ORTHO05D005015 1.8e-24 117.1 148 47.3
ClCG04G002900 Citrullus lanatus HOM05D004249 ORTHO05D005015 5.2e-24 115.5 241 35.3
Thhalv10001708m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 2.0e-23 113.6 69 73.9
THA.LOC104824119 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 7.5e-23 111.7 79 59.5
HPP92_011580 Vanilla planifolia HOM05D004249 ORTHO05D005015 1.3e-22 110.9 69 68.1
MELO3C033208.2 Cucumis melo HOM05D004249 ORTHO05D005015 3.7e-22 109.4 88 58.0
MBI10_g23575_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 3.7e-22 109.4 77 62.3
HPP92_011579 Vanilla planifolia HOM05D004249 ORTHO05D005015 4.6e-20 102.4 77 59.7
EL10Ac3g06161 Beta vulgaris HOM05D004249 ORTHO05D005015 1.5e-15 87.4 149 34.9
HPP92_011581 Vanilla planifolia HOM05D004249 ORTHO05D005015 3.7e-14 82.8 54 61.1
SGA_v2.0_scaffold37G14917 Striga asiatica HOM05D004249 ORTHO05D005015 8.3e-14 81.6 162 32.1
BraA03t09486Z Brassica rapa HOM05D004249 ORTHO05D005015 1.9e-13 80.5 44 81.8
Nn1g09453 Nelumbo nucifera HOM05D004249 ORTHO05D005015 7.1e-13 78.6 70 50.0
FAN23G1236 Fragaria x ananassa HOM05D004249 ORTHO05D005015 4.7e-09 65.9 39 74.4
Cfa025661 Carpinus fangiana HOM05D004249 ORTHO05D005015 5.8e-07 58.9 131 34.4
C08p38820 Brassica napus HOM05D000481 ORTHO05D000471 2.2e-06 57.0 84 40.5


User provided reference genes

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