Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G42670 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 8.8e-50 200.7 163 100.0
AT2G43795 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 9.4e-36 154.1 86 91.9
AL5G41850 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 5.7e-33 144.8 82 86.6
Thhalv10006256m.g Eutrema salsugineum HOM05D004131 ORTHO05D004778 7.5e-33 144.4 82 86.6
BcaC02g10087 Brassica carinata HOM05D004131 ORTHO05D004778 1.3e-32 143.7 85 82.4
C04p32910 Brassica napus HOM05D004131 ORTHO05D004778 1.3e-32 143.7 85 82.4
AT3G59800 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 1.7e-32 143.3 80 88.8
BcaB02g08209 Brassica carinata HOM05D004131 ORTHO05D004778 1.7e-32 143.3 84 83.3
A04p02020 Brassica napus HOM05D004131 ORTHO05D004778 1.7e-32 143.3 85 82.4
Sp5g03340 Schrenkiella parvula HOM05D004131 ORTHO05D004778 4.8e-32 141.7 81 85.2
BolC4t22105H Brassica oleracea HOM05D004131 ORTHO05D004778 8.3e-32 141.0 86 81.4
BraA04t15927Z Brassica rapa HOM05D004131 ORTHO05D004778 1.4e-31 140.2 80 86.2
Carub.0004s2633 Capsella rubella HOM05D004131 ORTHO05D004778 1.4e-31 140.2 80 87.5
Sp4g25870 Schrenkiella parvula HOM05D004131 ORTHO05D004778 2.4e-31 139.4 77 89.6
Aa31LG10G14050 Aethionema arabicum HOM05D004131 ORTHO05D004778 3.1e-31 139.0 79 86.1
BolC4t24854H Brassica oleracea HOM05D004131 ORTHO05D004778 2.0e-30 136.3 79 84.8
CARHR138980 Cardamine hirsuta HOM05D004131 ORTHO05D004778 3.5e-30 135.6 77 88.3
BcaB02g08900 Brassica carinata HOM05D004131 ORTHO05D004778 4.5e-30 135.2 77 85.7
BcaC02g12362 Brassica carinata HOM05D004131 ORTHO05D004778 4.5e-30 135.2 77 85.7
C04p04750 Brassica napus HOM05D004131 ORTHO05D004778 4.5e-30 135.2 77 85.7
A05p04000 Brassica napus HOM05D004131 ORTHO05D004778 1.1e-28 130.6 78 84.6
BraA05t19388Z Brassica rapa HOM05D004131 ORTHO05D004778 1.1e-28 130.6 78 84.6
THA.LOC104804159 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 1.9e-28 129.8 77 80.5
THA.LOC104805841 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 2.5e-28 129.4 77 80.5
Atru.chr4.1513 Acer truncatum HOM05D004131 ORTHO05D004778 4.2e-28 128.6 88 72.7
Ca_18622_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 5.5e-28 128.3 85 74.1
Ca_18628_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 5.5e-28 128.3 85 74.1
ECA130G0002 Erigeron canadensis HOM05D004131 ORTHO05D004778 5.5e-28 128.3 88 72.7
TWI63G0908 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 5.5e-28 128.3 88 72.7
Psat7g119160 Pisum sativum HOM05D004131 ORTHO05D004778 1.6e-27 126.7 77 80.5
TPR.G23549 Trifolium pratense HOM05D004131 ORTHO05D004778 1.6e-27 126.7 77 80.5
VMungo0251G3663 Vigna mungo HOM05D004131 ORTHO05D004778 1.6e-27 126.7 86 73.3
Ciclev10022332m.g Citrus clementina HOM05D004131 ORTHO05D004778 2.1e-27 126.3 88 71.6
Duzib268G1863 Durio zibethinus HOM05D004131 ORTHO05D004778 3.6e-27 125.6 87 72.4
Medtr4g087630 Medicago truncatula HOM05D004131 ORTHO05D004778 3.6e-27 125.6 77 79.2
PSO675G2278 Papaver somniferum HOM05D004131 ORTHO05D004778 3.6e-27 125.6 94 70.2
THA.LOC104802336 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 3.6e-27 125.6 76 78.9
CARHR170140 Cardamine hirsuta HOM05D004131 ORTHO05D004778 4.7e-27 125.2 72 87.5
Lj4g0014155 Lotus japonicus HOM05D004131 ORTHO05D004778 4.7e-27 125.2 86 72.1
PGSC0003DMG400005367 Solanum tuberosum HOM05D004131 ORTHO05D004778 8.0e-27 124.4 79 75.9
Gohir.D10G120800 Gossypium hirsutum HOM05D004131 ORTHO05D004778 1.0e-26 124.0 84 75.0
Phvul.003G059400 Phaseolus vulgaris HOM05D004131 ORTHO05D004778 1.0e-26 124.0 77 77.9
Prupe.7G267400 Prunus persica HOM05D004131 ORTHO05D004778 1.0e-26 124.0 93 69.9
Sed0002263 Sechium edule HOM05D004131 ORTHO05D004778 1.0e-26 124.0 81 74.1
TWI38G2196 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 1.0e-26 124.0 77 76.6
Actinidia18408 Actinidia chinensis HOM05D004131 ORTHO05D004778 1.4e-26 123.6 77 76.6
Glyma.07G206100 Glycine max HOM05D004131 ORTHO05D004778 1.4e-26 123.6 77 77.9
MD15G1147200 Malus domestica HOM05D004131 ORTHO05D004778 1.4e-26 123.6 77 76.6
Solyc12g019470.2 Solanum lycopersicum HOM05D004131 ORTHO05D004778 1.4e-26 123.6 79 75.9
Sopen12g009750 Solanum pennellii HOM05D004131 ORTHO05D004778 1.4e-26 123.6 79 75.9
GSVIVG01038193001 Vitis vinifera HOM05D004131 ORTHO05D004778 1.4e-26 123.6 85 72.9
MELO3C022231.2 Cucumis melo HOM05D004131 ORTHO05D004778 1.8e-26 123.2 88 71.6
Glyma.02G138900 Glycine max HOM05D004131 ORTHO05D004778 1.8e-26 123.2 86 70.9
Nn7g37517 Nelumbo nucifera HOM05D004131 ORTHO05D004778 1.8e-26 123.2 86 72.1
Nitab4.5_0000064g0030 Nicotiana tabacum HOM05D004131 ORTHO05D004778 1.8e-26 123.2 76 77.6
Nitab4.5_0005089g0010 Nicotiana tabacum HOM05D004131 ORTHO05D004778 1.8e-26 123.2 76 77.6
RcHm_v2.0_Chr2g0084981 Rosa chinensis HOM05D004131 ORTHO05D004778 1.8e-26 123.2 79 74.7
FAN23G0024 Fragaria x ananassa HOM05D004131 ORTHO05D004778 2.3e-26 122.9 79 74.7
FAN26G1335 Fragaria x ananassa HOM05D004131 ORTHO05D004778 2.3e-26 122.9 82 75.6
Gohir.A10G146200 Gossypium hirsutum HOM05D004131 ORTHO05D004778 2.3e-26 122.9 84 73.8
Gorai.011G132700 Gossypium raimondii HOM05D004131 ORTHO05D004778 2.3e-26 122.9 84 73.8
Lsat_1_v5_gn_7_67880 Lactuca sativa HOM05D004131 ORTHO05D004778 2.3e-26 122.9 82 73.2
PSO017G4173 Papaver somniferum HOM05D004131 ORTHO05D004778 2.3e-26 122.9 87 71.3
COL.COLO4_04655 Corchorus olitorius HOM05D004131 ORTHO05D004778 3.0e-26 122.5 86 72.1
CsaV3_5G040580 Cucumis sativus L. HOM05D004131 ORTHO05D004778 3.0e-26 122.5 88 71.6
ECA233G3286 Erigeron canadensis HOM05D004131 ORTHO05D004778 3.0e-26 122.5 76 77.6
Migut.G00833 Erythranthe guttata HOM05D004131 ORTHO05D004778 3.0e-26 122.5 87 69.0
FvH4_1g00470 Fragaria vesca HOM05D004131 ORTHO05D004778 3.0e-26 122.5 77 76.6
FAN28G1052 Fragaria x ananassa HOM05D004131 ORTHO05D004778 3.0e-26 122.5 77 76.6
MD02G1003900 Malus domestica HOM05D004131 ORTHO05D004778 3.0e-26 122.5 83 74.7
Peaxi162Scf00483g00111 Petunia axillaris HOM05D004131 ORTHO05D004778 4.0e-26 122.1 74 79.7
CAN.G448.4 Capsicum annuum HOM05D004131 ORTHO05D004778 5.2e-26 121.7 74 79.7
MBI07_g36705_MAGBIO Magnolia biondii HOM05D004131 ORTHO05D004778 5.2e-26 121.7 74 79.7
CSS0000211 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 6.8e-26 121.3 84 70.2
CSS0004184 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 6.8e-26 121.3 97 63.9
CSS0028329 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 6.8e-26 121.3 97 63.9
CSS0046112 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 6.8e-26 121.3 84 70.2
TAR636G2398 Trochodendron aralioides HOM05D004131 ORTHO05D004778 6.8e-26 121.3 87 70.1
Duzib212G0438 Durio zibethinus HOM05D004131 ORTHO05D004778 8.9e-26 120.9 83 73.5
Lju470A13G17 Lonicera japonica HOM05D004131 ORTHO05D004778 8.9e-26 120.9 79 73.4
Lju470A13T20 Lonicera japonica HOM05D004131 ORTHO05D004778 8.9e-26 120.9 81 71.6
SalBow6G7192 Salvia bowleyana HOM05D004131 ORTHO05D004778 8.9e-26 120.9 84 70.2
Ah.07g202990 Amaranthus hybridus HOM05D004131 ORTHO05D004778 1.2e-25 120.6 83 74.7
Dinv18309 Davidia involucrata HOM05D004131 ORTHO05D004778 1.5e-25 120.2 85 69.4
Dinv33225 Davidia involucrata HOM05D004131 ORTHO05D004778 1.5e-25 120.2 88 67.0
Lj6C265T11 Lonicera japonica HOM05D004131 ORTHO05D004778 1.5e-25 120.2 87 69.0
Manes.01G017500 Manihot esculenta HOM05D004131 ORTHO05D004778 1.5e-25 120.2 79 73.4
Potri.007G139900 Populus trichocarpa HOM05D004131 ORTHO05D004778 1.5e-25 120.2 83 72.3
Sabra07G0117600 Salix brachista HOM05D004131 ORTHO05D004778 1.5e-25 120.2 84 71.4
unitig_8.g3637 Utricularia gibba HOM05D004131 ORTHO05D004778 1.5e-25 120.2 81 70.4
Aqoxy2G04165 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 2.0e-25 119.8 84 71.4
CANSAT56G2001 Cannabis sativa HOM05D004131 ORTHO05D004778 2.0e-25 119.8 73 78.1
CDE08G0022 Ceratophyllum demersum HOM05D004131 ORTHO05D004778 2.0e-25 119.8 85 68.2
Migut.N03052 Erythranthe guttata HOM05D004131 ORTHO05D004778 2.0e-25 119.8 87 69.0
HanXRQChr02g0059071 Helianthus annuus HOM05D004131 ORTHO05D004778 2.0e-25 119.8 73 79.5
Lalb_Chr16g0384341 Lupinus albus HOM05D004131 ORTHO05D004778 2.6e-25 119.4 86 67.4
Actinidia28972 Actinidia chinensis HOM05D004131 ORTHO05D004778 3.4e-25 119.0 74 75.7
Cc03_g14990 Coffea canephora HOM05D004131 ORTHO05D004778 3.4e-25 119.0 83 72.3
Sabra17G0009400 Salix brachista HOM05D004131 ORTHO05D004778 3.4e-25 119.0 88 68.2
TAR362G1052 Trochodendron aralioides HOM05D004131 ORTHO05D004778 3.4e-25 119.0 76 75.0
HPP92_023727 Vanilla planifolia HOM05D004131 ORTHO05D004778 3.4e-25 119.0 85 68.2
Cfa021469 Carpinus fangiana HOM05D004131 ORTHO05D004778 4.4e-25 118.6 77 74.0
Potri.017G010100 Populus trichocarpa HOM05D004131 ORTHO05D004778 4.4e-25 118.6 88 67.0
ATR0743G176 Amborella trichopoda HOM05D004131 ORTHO05D004778 7.5e-25 117.9 77 74.0
Sabra07G0113200 Salix brachista HOM05D004131 ORTHO05D004778 7.5e-25 117.9 78 71.8
Haze_11173 Corylus avellana HOM05D004131 ORTHO05D004778 9.8e-25 117.5 77 72.7
Haze_11178 Corylus avellana HOM05D004131 ORTHO05D004778 9.8e-25 117.5 77 72.7
PGR042G3815 Punica granatum HOM05D004131 ORTHO05D004778 9.8e-25 117.5 77 72.7
Zm00001eb425720 Zea mays HOM05D004131 ORTHO05D004778 1.7e-24 116.7 72 79.2
CiPaw.01G198800 Carya illinoinensis HOM05D004131 ORTHO05D004778 2.8e-24 115.9 76 72.4
Lalb_Chr05g0218801 Lupinus albus HOM05D004131 ORTHO05D004778 2.8e-24 115.9 85 65.9
BcaC07g40454 Brassica carinata HOM05D004131 ORTHO05D004778 3.7e-24 115.5 80 76.2
SalBow3G2571 Salvia bowleyana HOM05D004131 ORTHO05D004778 4.9e-24 115.2 74 73.0
MSTRG.24561 Avicennia marina HOM05D004131 ORTHO05D004778 6.3e-24 114.8 84 69.0
Hund12374 Selenicereus undatus HOM05D004131 ORTHO05D004778 8.3e-24 114.4 74 74.3
Ah.13g073340 Amaranthus hybridus HOM05D004131 ORTHO05D004778 1.1e-23 114.0 83 71.1
AUR62023766 Chenopodium quinoa HOM05D004131 ORTHO05D004778 1.4e-23 113.6 89 65.2
Sc13g0007290 Simmondsia chinensis HOM05D004131 ORTHO05D004778 1.8e-23 113.2 72 75.0
AUR62002422 Chenopodium quinoa HOM05D004131 ORTHO05D004778 3.2e-23 112.5 87 63.2
CiPaw.02G123300 Carya illinoinensis HOM05D004131 ORTHO05D004778 4.1e-23 112.1 73 74.0
AagrBONN_evm.TU.Sc2ySwM_344.2765 Anthoceros agrestis HOM05D004131 ORTHO05D004778 1.6e-22 110.2 82 69.5
EL10Ac3g06119 Beta vulgaris HOM05D004131 ORTHO05D004778 1.6e-22 110.2 74 73.0
Eucgr.G01598 Eucalyptus grandis HOM05D004131 ORTHO05D004778 1.6e-22 110.2 72 72.2
Eucgr.L00027 Eucalyptus grandis HOM05D004131 ORTHO05D004778 1.6e-22 110.2 72 72.2
SMO364G0381 Selaginella moellendorffii HOM05D004131 ORTHO05D004778 2.0e-22 109.8 85 64.7
SEGI_19170 Sequoiadendron giganteum HOM05D004131 ORTHO05D004778 2.0e-22 109.8 85 62.4
Mapoly0055s0100 Marchantia polymorpha HOM05D004131 ORTHO05D004778 1.7e-21 106.7 83 66.3
Pp3c3_18840 Physcomitrium patens HOM05D004131 ORTHO05D004778 1.7e-21 106.7 95 60.0
arahy.Tifrunner.gnm1.ann1.GY80IK Arachis hypogaea HOM05D004131 ORTHO05D004778 2.3e-21 106.3 101 56.4
BcaB02g08224 Brassica carinata HOM05D004131 ORTHO05D004778 3.6e-19 99.0 63 77.8
BcaC07g40508 Brassica carinata HOM05D004131 ORTHO05D004778 3.1e-18 95.9 82 63.4
C08p34760 Brassica napus HOM05D004131 ORTHO05D004778 4.0e-18 95.5 79 64.6
BolC8t51078H Brassica oleracea HOM05D004131 ORTHO05D004778 4.0e-18 95.5 79 64.6
vmacro15701 Vaccinium macrocarpon HOM05D004131 ORTHO05D004778 6.8e-18 94.7 145 42.1
CBR_g6538 Chara braunii HOM05D004131 ORTHO05D004778 2.6e-17 92.8 79 58.2
Rhsim02G0086100 Rhododendron simsii HOM05D004131 ORTHO05D004778 7.0e-15 84.7 172 35.5
Lj6C255T9 Lonicera japonica HOM05D004131 ORTHO05D004778 1.2e-14 84.0 80 57.5
Aqoxy604s001 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 6.0e-14 81.6 59 67.8
BcaC07g40452 Brassica carinata HOM05D004131 ORTHO05D004778 3.3e-12 75.9 48 83.3
RhsimUnG0015600 Rhododendron simsii HOM05D004131 ORTHO05D004778 6.2e-11 71.6 206 29.6
Actinidia11437 Actinidia chinensis HOM05D004131 ORTHO05D004778 1.1e-10 70.9 42 71.4
Cre16.g660850 Chlamydomonas reinhardtii HOM05D004131 ORTHO05D004778 1.4e-10 70.5 83 49.4
Carub.0005s2652 Capsella rubella HOM05D004131 ORTHO05D004778 6.8e-10 68.2 40 87.5
QL10p058548 Quercus lobata HOM05D004131 ORTHO05D004778 8.9e-10 67.8 34 82.4
QL10p059325 Quercus lobata HOM05D004131 ORTHO05D004778 8.9e-10 67.8 34 82.4
QL10p058544 Quercus lobata HOM05D004131 ORTHO05D004778 2.0e-09 66.6 54 64.8
Oeu050314.3 Olea europaea HOM05D004131 ORTHO05D004778 3.4e-09 65.9 59 61.0
Sed0017538 Sechium edule HOM05D004131 ORTHO05D004778 3.4e-09 65.9 34 79.4
Thecc.04G162100 Theobroma cacao HOM05D004131 ORTHO05D004778 9.8e-09 64.3 53 69.8
QL10p059329 Quercus lobata HOM05D004131 ORTHO05D004778 4.9e-08 62.0 44 70.5
BcaB02g07200 Brassica carinata HOM05D004131 ORTHO05D004778 1.1e-07 60.8 50 66.0
BcaB05g25107 Brassica carinata HOM05D004131 ORTHO05D004778 1.1e-07 60.8 52 67.3
BcaB05g25109 Brassica carinata HOM05D004131 ORTHO05D004778 1.1e-07 60.8 52 67.3
BcaB05g25110 Brassica carinata HOM05D004131 ORTHO05D004778 1.1e-07 60.8 52 67.3
BcaB05g25112 Brassica carinata HOM05D004131 ORTHO05D004778 1.1e-07 60.8 52 67.3
BcaB02g07199 Brassica carinata HOM05D004131 ORTHO05D004778 4.1e-07 58.9 39 76.9
BcaNung06582 Brassica carinata HOM05D004131 ORTHO05D004778 7.1e-07 58.2 41 75.6
ClCG08G000030 Citrullus lanatus HOM05D004131 ORTHO05D004778 7.1e-07 58.2 69 53.6
MSTRG.9725 Avicennia marina HOM05D005043 ORTHO05D000110 1.6e-06 57.0 92 39.1
BcaB05g25118 Brassica carinata HOM05D004131 ORTHO05D004778 1.6e-06 57.0 48 68.8
BraA09t40640Z Brassica rapa HOM05D004131 ORTHO05D004778 2.7e-06 56.2 44 65.9
Lju470A13T22 Lonicera japonica HOM05D004131 ORTHO05D004778 4.6e-06 55.5 51 60.8
BcaB05g25113 Brassica carinata HOM05D004131 ORTHO05D004778 7.8e-06 54.7 47 68.1
BcaB05g25117 Brassica carinata HOM05D004131 ORTHO05D004778 7.8e-06 54.7 47 66.0


User provided reference genes

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