Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G42630 Arabidopsis lyrata HOM05D000101 ORTHO05D007021 3.9e-108 394.8 199 100.0
AT2G43760 Arabidopsis thaliana HOM05D000101 ORTHO05D007021 6.8e-105 384.0 199 97.5
Carub.0004s2629 Capsella rubella HOM05D000101 ORTHO05D007021 3.2e-102 375.2 199 95.0
Thhalv10001567m.g Eutrema salsugineum HOM05D000101 ORTHO05D007021 2.6e-96 355.5 199 88.9
CARHR138950 Cardamine hirsuta HOM05D000101 ORTHO05D007021 2.1e-93 345.9 197 89.3
Sp4g25830 Schrenkiella parvula HOM05D000101 ORTHO05D007021 1.6e-90 336.3 206 82.0
Aa31LG1G25480 Aethionema arabicum HOM05D000101 ORTHO05D007021 1.3e-87 326.6 187 85.6
A04p33060 Brassica napus HOM05D000101 ORTHO05D007021 1.3e-87 326.6 195 82.6
BraA04t18766Z Brassica rapa HOM05D000101 ORTHO05D007021 1.3e-87 326.6 195 82.6
BcaC02g12365 Brassica carinata HOM05D000101 ORTHO05D007021 1.1e-81 307.0 190 83.7
C04p04720 Brassica napus HOM05D000101 ORTHO05D007021 1.1e-81 307.0 190 83.7
BolC4t22102H Brassica oleracea HOM05D000101 ORTHO05D007021 1.1e-81 307.0 190 83.7
A05p03970 Brassica napus HOM05D000101 ORTHO05D007021 3.4e-80 302.0 185 82.7
BraA05t19385Z Brassica rapa HOM05D000101 ORTHO05D007021 8.4e-79 297.4 185 81.1
Cpa.g.sc9.381 Carica papaya HOM05D000101 ORTHO05D007021 8.7e-76 287.3 181 77.9
THA.LOC104808404 Tarenaya hassleriana HOM05D000101 ORTHO05D007021 1.9e-75 286.2 197 75.1
BcaC02g07150 Brassica carinata HOM05D000101 ORTHO05D007021 1.4e-73 280.0 195 73.8
Prupe.4G269700 Prunus persica HOM05D000101 ORTHO05D007021 4.5e-72 275.0 191 69.6
FAN23G0853 Fragaria x ananassa HOM05D002590 ORTHO05D002763 1.3e-71 273.5 190 68.9
Rhsim13G0204000 Rhododendron simsii HOM05D000101 ORTHO05D007021 3.8e-71 271.9 187 72.2
QL01p016256 Quercus lobata HOM05D000101 ORTHO05D007021 5.0e-71 271.6 197 68.5
Dinv29321 Davidia involucrata HOM05D000101 ORTHO05D007021 8.5e-71 270.8 183 70.5
Sc06g0003480 Simmondsia chinensis HOM05D000101 ORTHO05D007021 8.5e-71 270.8 189 69.3
QL01p016239 Quercus lobata HOM05D000101 ORTHO05D007021 3.2e-70 268.9 197 68.0
CiPaw.13G147800 Carya illinoinensis HOM05D000101 ORTHO05D007021 4.2e-70 268.5 185 70.3
Glyma.20G043800 Glycine max HOM05D000101 ORTHO05D007021 4.2e-70 268.5 186 68.8
RcHm_v2.0_Chr2g0110001 Rosa chinensis HOM05D000101 ORTHO05D007021 4.2e-70 268.5 199 65.8
Ciclev10016806m.g Citrus clementina HOM05D000101 ORTHO05D007021 5.5e-70 268.1 188 69.1
Haze_23275 Corylus avellana HOM05D000101 ORTHO05D007021 5.5e-70 268.1 182 70.9
Lj6g0006302 Lotus japonicus HOM05D000101 ORTHO05D007021 1.2e-69 266.9 189 68.8
Potri.001G272100 Populus trichocarpa HOM05D000101 ORTHO05D007021 2.1e-69 266.2 194 68.0
Thecc.09G252400 Theobroma cacao HOM05D000101 ORTHO05D007021 2.1e-69 266.2 183 69.9
DCAR_002122 Daucus carota HOM05D000101 ORTHO05D007021 3.6e-69 265.4 187 68.4
GSVIVG01037393001 Vitis vinifera HOM05D000101 ORTHO05D007021 6.1e-69 264.6 187 67.9
Lj6g0007250 Lotus japonicus HOM05D000101 ORTHO05D007021 1.0e-68 263.8 189 68.3
Duzib170G0394 Durio zibethinus HOM05D000101 ORTHO05D007021 1.3e-68 263.5 183 70.5
FvH4_1g18980 Fragaria vesca HOM05D000101 ORTHO05D007021 1.3e-68 263.5 200 65.5
Cc01_g07360 Coffea canephora HOM05D000101 ORTHO05D007021 1.8e-68 263.1 189 68.3
ClCG02G022620 Citrullus lanatus HOM05D000101 ORTHO05D007021 2.3e-68 262.7 186 68.3
Dinv29322 Davidia involucrata HOM05D000101 ORTHO05D007021 3.0e-68 262.3 183 68.9
Dinv29324 Davidia involucrata HOM05D000101 ORTHO05D007021 3.0e-68 262.3 183 69.4
Eucgr.J00668 Eucalyptus grandis HOM05D000101 ORTHO05D007021 3.0e-68 262.3 186 68.8
Oeu041722.1 Olea europaea HOM05D000101 ORTHO05D007021 3.0e-68 262.3 181 69.6
CAN.G65.208 Capsicum annuum HOM05D000101 ORTHO05D007021 5.1e-68 261.5 188 66.5
CsaV3_6G038720 Cucumis sativus L. HOM05D000101 ORTHO05D007021 5.1e-68 261.5 192 66.1
TPR.G11957 Trifolium pratense HOM05D000101 ORTHO05D007021 5.1e-68 261.5 185 68.1
Lalb_Chr06g0173421 Lupinus albus HOM05D000101 ORTHO05D007021 6.7e-68 261.2 186 67.7
Duzib150G0203 Durio zibethinus HOM05D000101 ORTHO05D007021 8.7e-68 260.8 186 67.2
Duzib150G0818 Durio zibethinus HOM05D000101 ORTHO05D007021 8.7e-68 260.8 186 67.2
PGR119G0271 Punica granatum HOM05D000101 ORTHO05D007021 8.7e-68 260.8 189 68.3
TWI79G1559 Tripterygium wilfordii HOM05D000101 ORTHO05D007021 8.7e-68 260.8 187 68.4
FAN28G0419 Fragaria x ananassa HOM05D000101 ORTHO05D007021 1.1e-67 260.4 186 68.3
Glyma.07G235100 Glycine max HOM05D000101 ORTHO05D007021 1.9e-67 259.6 186 65.6
GSVIVG01037400001 Vitis vinifera HOM05D000101 ORTHO05D007021 1.9e-67 259.6 186 66.1
Gohir.D08G019100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 3.3e-67 258.8 183 67.8
Gorai.004G013600 Gossypium raimondii HOM05D000101 ORTHO05D007021 3.3e-67 258.8 183 67.8
COL.COLO4_33246 Corchorus olitorius HOM05D000101 ORTHO05D007021 4.3e-67 258.5 183 68.3
CANSAT54G0276 Cannabis sativa HOM05D000101 ORTHO05D007021 7.4e-67 257.7 188 66.5
MELO3C014535.2 Cucumis melo HOM05D000101 ORTHO05D007021 1.3e-66 256.9 187 66.3
Solyc06g073615.1 Solanum lycopersicum HOM05D000101 ORTHO05D007021 1.3e-66 256.9 188 66.5
Sopen06g030030 Solanum pennellii HOM05D000101 ORTHO05D007021 1.3e-66 256.9 188 66.5
Ca_25981_v3 Cicer arietinum L. HOM05D000101 ORTHO05D007021 3.7e-66 255.4 188 66.0
MSTRG.17651 Avicennia marina HOM05D000101 ORTHO05D007021 4.8e-66 255.0 193 65.8
Medtr3g041720 Medicago truncatula HOM05D000101 ORTHO05D007021 4.8e-66 255.0 188 64.4
VMungo0540G1253 Vigna mungo HOM05D000101 ORTHO05D007021 4.8e-66 255.0 177 68.4
CSS0002182 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D007021 6.3e-66 254.6 179 68.2
Peaxi162Scf00526g00083 Petunia axillaris HOM05D000101 ORTHO05D007021 8.2e-66 254.2 188 66.0
SalBow3G0539 Salvia bowleyana HOM05D000101 ORTHO05D007021 8.2e-66 254.2 179 69.3
Ah.06g194870 Amaranthus hybridus HOM05D000101 ORTHO05D007021 1.1e-65 253.8 184 67.9
Nitab4.5_0006265g0050 Nicotiana tabacum HOM05D000101 ORTHO05D007021 1.8e-65 253.1 188 64.9
Gohir.A08G009100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 3.1e-65 252.3 183 66.7
Psat5g198640 Pisum sativum HOM05D000101 ORTHO05D007021 3.1e-65 252.3 186 63.4
Phvul.006G016500 Phaseolus vulgaris HOM05D000101 ORTHO05D007021 4.1e-65 251.9 184 67.4
Sed0019464 Sechium edule HOM05D000101 ORTHO05D007021 4.1e-65 251.9 194 62.9
Aqoxy2G03523 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 5.3e-65 251.5 178 68.5
Nitab4.5_0000271g0210 Nicotiana tabacum HOM05D000101 ORTHO05D007021 5.3e-65 251.5 188 64.4
AUR62000226 Chenopodium quinoa HOM05D000101 ORTHO05D007021 1.5e-64 250.0 196 63.8
Migut.N02406 Erythranthe guttata HOM05D000101 ORTHO05D007021 2.6e-64 249.2 180 68.9
Gorai.001G132800 Gossypium raimondii HOM05D000101 ORTHO05D007021 2.6e-64 249.2 183 65.6
PGSC0003DMG400005919 Solanum tuberosum HOM05D000101 ORTHO05D007021 2.6e-64 249.2 188 65.4
Lj2C4T1 Lonicera japonica HOM05D000101 ORTHO05D007021 3.4e-64 248.8 183 65.0
Manes.01G177200 Manihot esculenta HOM05D000101 ORTHO05D007021 3.4e-64 248.8 182 66.5
Lsat_1_v5_gn_5_88160 Lactuca sativa HOM05D000101 ORTHO05D007021 7.7e-64 247.7 181 67.4
TAR383G0318 Trochodendron aralioides HOM05D000101 ORTHO05D007021 1.0e-63 247.3 183 67.2
Lj2C98T13 Lonicera japonica HOM05D000101 ORTHO05D007021 1.7e-63 246.5 183 64.5
TAR383G0810 Trochodendron aralioides HOM05D000101 ORTHO05D007021 3.8e-63 245.4 183 66.7
EL10Ac4g10078 Beta vulgaris HOM05D000101 ORTHO05D007021 1.1e-62 243.8 205 60.5
HanXRQChr10g0307811 Helianthus annuus HOM05D000101 ORTHO05D007021 1.4e-62 243.4 182 64.8
Glyma.07G235000 Glycine max HOM05D000101 ORTHO05D007021 3.2e-62 242.3 181 64.6
Nn2g10490 Nelumbo nucifera HOM05D000101 ORTHO05D007021 2.1e-61 239.6 180 65.6
SGA_v2.0_scaffold79G25529 Striga asiatica HOM05D000101 ORTHO05D007021 4.6e-61 238.4 178 64.0
Medtr8g036270 Medicago truncatula HOM05D000101 ORTHO05D007021 1.0e-60 237.3 174 64.9
unitig_22.g6178 Utricularia gibba HOM05D000101 ORTHO05D007021 1.0e-60 237.3 180 65.0
ECA234G3554 Erigeron canadensis HOM05D000101 ORTHO05D007021 1.8e-60 236.5 184 62.5
SGA_v2.0_scaffold13G06395 Striga asiatica HOM05D000101 ORTHO05D007021 5.1e-60 235.0 178 62.9
PSO675G1036 Papaver somniferum HOM05D000101 ORTHO05D007021 7.4e-59 231.1 194 59.8
Actinidia20391 Actinidia chinensis HOM05D000101 ORTHO05D007021 1.7e-58 229.9 178 62.9
MBI16_g00843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 1.7e-58 229.9 178 62.4
PSO017G1758 Papaver somniferum HOM05D000101 ORTHO05D007021 3.7e-58 228.8 194 59.3
CDE06G1918 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 4.1e-57 225.3 182 61.5
CDE04G1472 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 2.2e-55 219.5 182 60.4
SEGI_13887 Sequoiadendron giganteum HOM05D000101 ORTHO05D007021 2.7e-53 212.6 190 57.9
MBI15_g46843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 3.0e-52 209.1 150 64.7
SGA_v2.0_scaffold52G19230 Striga asiatica HOM05D000101 ORTHO05D007021 3.9e-52 208.8 123 75.6
ATR0626G326 Amborella trichopoda HOM05D000101 ORTHO05D007021 2.0e-51 206.5 167 63.5
HPP92_017376 Vanilla planifolia HOM05D000101 ORTHO05D007021 2.0e-51 206.5 179 57.5
Os02g0140300 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 4.5e-48 195.3 183 53.6
SHI24924 Sapria himalayana HOM05D000101 ORTHO05D007021 3.8e-47 192.2 150 62.0
Gohir.D07G123100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 3.2e-46 189.1 123 74.0
Zm00001eb208120 Zea mays HOM05D000101 ORTHO05D007021 3.2e-46 189.1 179 53.6
Gohir.A07G118800 Gossypium hirsutum HOM05D000101 ORTHO05D007021 4.2e-46 188.7 122 73.8
Lsat_1_v5_gn_5_88140 Lactuca sativa HOM05D000101 ORTHO05D007021 4.2e-46 188.7 181 56.9
AUR62006572 Chenopodium quinoa HOM05D000101 ORTHO05D007021 7.2e-46 188.0 190 51.1
C04p70760 Brassica napus HOM05D000101 ORTHO05D007021 9.4e-46 187.6 195 54.4
BolC4t28578H Brassica oleracea HOM05D000101 ORTHO05D007021 9.4e-46 187.6 195 54.4
Mapoly0016s0014 Marchantia polymorpha HOM05D000101 ORTHO05D007021 9.4e-46 187.6 149 61.7
SMO119G0082 Selaginella moellendorffii HOM05D000101 ORTHO05D007021 8.8e-44 181.0 150 59.3
AagrBONN_evm.TU.Sc2ySwM_228.724 Anthoceros agrestis HOM05D000101 ORTHO05D007021 3.3e-43 179.1 146 60.3
Pp3c13_8000 Physcomitrium patens HOM05D000101 ORTHO05D007021 4.4e-43 178.7 149 60.4
Atru.chr5.404 Acer truncatum HOM05D000101 ORTHO05D007021 7.5e-43 177.9 123 69.9
Sabra16G0167400 Salix brachista HOM05D000101 ORTHO05D007021 1.1e-38 164.1 184 51.1
Aqoxy102s002 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 1.5e-38 163.7 120 65.0
Cre07.g322250 Chlamydomonas reinhardtii HOM05D000101 ORTHO05D007021 8.3e-34 147.9 128 53.1
BcaB02g08903 Brassica carinata HOM05D005622 ORTHO05D002854 2.7e-32 142.9 87 80.5
MCO04G049 Micromonas commoda HOM05D000101 ORTHO05D007021 3.5e-32 142.5 131 55.7
Oeu046204.1 Olea europaea HOM05D000101 ORTHO05D007021 3.8e-31 139.0 92 70.7
BcaC01g02229 Brassica carinata HOM05D000101 ORTHO05D007021 5.0e-31 138.7 171 49.7
Atru.chr3.2842 Acer truncatum HOM05D000101 ORTHO05D007021 1.2e-29 134.0 84 75.0
CBR_g72677 Chara braunii HOM05D000101 ORTHO05D007021 3.6e-29 132.5 148 46.6
PRCOL_00006009 Prasinoderma coloniale HOM05D000101 ORTHO05D007021 5.7e-27 125.2 183 41.0
C03p67630 Brassica napus HOM05D000101 ORTHO05D007021 5.9e-24 115.2 171 43.9
BolSC21t60259H Brassica oleracea HOM05D000101 ORTHO05D007021 1.3e-23 114.0 149 46.3
BcaB02g08904 Brassica carinata HOM05D005622 ORTHO05D002854 5.0e-23 112.1 61 90.2
GSVIVG01027252001 Vitis vinifera HOM05D000101 ORTHO05D007021 4.9e-18 95.5 55 76.4
Cfa024344 Carpinus fangiana HOM05D000101 ORTHO05D007021 3.5e-16 89.4 192 31.2
Os02g0517366 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 1.9e-09 67.0 66 50.0


User provided reference genes

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