Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G42610 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 2.9e-102 375.2 180 100.0
Sp7g10340 Schrenkiella parvula HOM05D008029 ORTHO05D003588 1.3e-41 173.7 168 57.7
BraA03t11653Z Brassica rapa HOM05D008029 ORTHO05D003588 3.7e-41 172.2 169 55.6
A03p24440 Brassica napus HOM05D008029 ORTHO05D003588 3.1e-40 169.1 169 55.0
Thhalv10001732m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 5.3e-40 168.3 170 57.1
Thhalv10010901m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 3.5e-39 165.6 201 51.2
BolC4t28575H Brassica oleracea HOM05D008029 ORTHO05D003588 1.7e-38 163.3 168 56.5
A04p33040 Brassica napus HOM05D008029 ORTHO05D003588 6.5e-38 161.4 168 55.4
BraA04t18763Z Brassica rapa HOM05D008029 ORTHO05D003588 2.5e-37 159.5 168 55.4
BolC4t22100H Brassica oleracea HOM05D008029 ORTHO05D003588 7.2e-37 157.9 172 54.1
A03p46150 Brassica napus HOM05D008029 ORTHO05D003588 1.6e-36 156.8 172 54.7
A05p03950 Brassica napus HOM05D008029 ORTHO05D003588 2.7e-36 156.0 173 53.8
BraA05t19383Z Brassica rapa HOM05D008029 ORTHO05D003588 2.7e-36 156.0 173 54.3
AT2G43745 Arabidopsis thaliana HOM05D008029 ORTHO05D003588 4.7e-36 155.2 93 84.9
BcaC02g07152 Brassica carinata HOM05D008029 ORTHO05D003588 6.1e-36 154.8 138 59.4
C04p70740 Brassica napus HOM05D008029 ORTHO05D003588 6.1e-36 154.8 138 59.4
BolC4t28574H Brassica oleracea HOM05D008029 ORTHO05D003588 6.1e-36 154.8 138 59.4
AL4G42570 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 1.4e-35 153.7 177 49.7
BraA05t19382Z Brassica rapa HOM05D008029 ORTHO05D003588 1.4e-35 153.7 180 53.3
CARHR099610 Cardamine hirsuta HOM05D008029 ORTHO05D003588 3.5e-31 139.0 84 77.4
BcaC02g07151 Brassica carinata HOM05D000384 ORTHO05D000468 2.9e-30 136.0 119 62.2
CARHR050270 Cardamine hirsuta HOM05D008029 ORTHO05D003588 3.8e-30 135.6 150 50.0
A05p03940 Brassica napus HOM05D008029 ORTHO05D003588 5.0e-30 135.2 167 50.3
BcaB01g03363 Brassica carinata HOM05D008029 ORTHO05D003588 6.5e-30 134.8 142 50.7
C03p29140 Brassica napus HOM05D008029 ORTHO05D003588 8.6e-30 134.4 203 43.8
A06p31150 Brassica napus HOM05D008029 ORTHO05D003588 3.2e-29 132.5 171 47.4
BolC3t15266H Brassica oleracea HOM05D008029 ORTHO05D003588 4.2e-29 132.1 203 43.3
BcaC01g05215 Brassica carinata HOM05D008029 ORTHO05D003588 5.5e-29 131.7 173 47.4
CARHR099620 Cardamine hirsuta HOM05D008029 ORTHO05D003588 5.5e-29 131.7 77 81.8
C04p70750 Brassica napus HOM05D000384 ORTHO05D000468 7.2e-29 131.3 119 62.2
Carub.0004s2627 Capsella rubella HOM05D008029 ORTHO05D003588 8.0e-28 127.9 148 50.7
AT2G43730 Arabidopsis thaliana HOM05D008029 ORTHO05D003588 1.3e-25 120.6 149 47.7
AT2G43740 Arabidopsis thaliana HOM05D008029 ORTHO05D003588 1.4e-24 117.1 152 47.4
AL4G42580 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 7.0e-24 114.8 141 45.4
A09p45570 Brassica napus HOM05D008029 ORTHO05D003588 4.5e-23 112.1 119 53.8
BraA09t40018Z Brassica rapa HOM05D008029 ORTHO05D003588 4.5e-23 112.1 119 53.8
Sp4g25800 Schrenkiella parvula HOM05D008029 ORTHO05D016094 6.6e-22 108.2 141 41.8
AL4G42600 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 3.3e-21 105.9 170 42.4
Migut.N00044 Erythranthe guttata HOM05D000862 ORTHO05D003588 2.1e-20 103.2 139 42.4
Aa31LG1G25450 Aethionema arabicum HOM05D008029 ORTHO05D003588 4.7e-20 102.1 166 39.2
C04p70730 Brassica napus HOM05D008029 ORTHO05D016094 1.0e-19 100.9 143 44.1
BraA03t11654Z Brassica rapa HOM05D008029 ORTHO05D003588 5.2e-19 98.6 141 45.4
SGA_v2.0_scaffold480G52303 Striga asiatica HOM05D000862 ORTHO05D003588 8.9e-19 97.8 136 41.9
A03p24450 Brassica napus HOM05D008029 ORTHO05D003588 1.2e-18 97.4 141 44.7
BolC4t28573H Brassica oleracea HOM05D008029 ORTHO05D016094 1.2e-18 97.4 148 42.6
AL4G42590 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 3.4e-18 95.9 119 47.9
MSTRG.21770 Avicennia marina HOM05D000862 ORTHO05D003588 3.4e-18 95.9 137 39.4
Thhalv10001798m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 9.8e-18 94.4 180 36.7
BcaC02g07154 Brassica carinata HOM05D008029 ORTHO05D016094 6.4e-17 91.7 142 37.3
C03p29130 Brassica napus HOM05D008029 ORTHO05D003588 6.4e-17 91.7 141 42.6
BolC3t15265H Brassica oleracea HOM05D008029 ORTHO05D003588 6.4e-17 91.7 141 42.6
THA.LOC104800921 Tarenaya hassleriana HOM05D008029 ORTHO05D003588 1.8e-16 90.1 189 36.0
BcaC01g05216 Brassica carinata HOM05D008029 ORTHO05D003588 2.4e-16 89.7 141 42.6
MSTRG.21769 Avicennia marina HOM05D000862 ORTHO05D003588 5.4e-16 88.6 139 35.3
BcaB06g29345 Brassica carinata HOM05D008029 ORTHO05D003588 5.4e-16 88.6 149 41.6
CAN.G749.20 Capsicum annuum HOM05D000862 ORTHO05D003588 2.0e-15 86.7 143 37.1
Oeu016489.1 Olea europaea HOM05D007843 ORTHO05D003639 2.0e-15 86.7 139 36.0
BcaC02g12367 Brassica carinata HOM05D008029 ORTHO05D003588 4.6e-15 85.5 123 47.2
C04p04700 Brassica napus HOM05D008029 ORTHO05D003588 4.6e-15 85.5 123 47.2
Thhalv10009313m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 1.3e-14 84.0 146 37.0
C05p04080 Brassica napus HOM05D008029 ORTHO05D003588 2.3e-14 83.2 184 32.6
Dinv15179 Davidia involucrata HOM05D000862 ORTHO05D003588 2.3e-14 83.2 146 39.0
THA.LOC104800919 Tarenaya hassleriana HOM05D000862 ORTHO05D003588 5.0e-14 82.0 182 36.3
CSS0042531 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 6.6e-14 81.6 150 34.7
CAN.G749.24 Capsicum annuum HOM05D000862 ORTHO05D003588 6.6e-14 81.6 142 35.9
Solyc09g083030.1 Solanum lycopersicum HOM05D000862 ORTHO05D003588 8.6e-14 81.3 141 35.5
Sopen09g031900 Solanum pennellii HOM05D000862 ORTHO05D003588 8.6e-14 81.3 141 35.5
BcaC05g24342 Brassica carinata HOM05D000862 ORTHO05D003588 3.3e-13 79.3 175 33.7
CSS0041630 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 4.3e-13 79.0 150 34.7
Nitab4.5_0001787g0070 Nicotiana tabacum HOM05D000862 ORTHO05D003588 4.3e-13 79.0 147 31.3
Nitab4.5_0012347g0020 Nicotiana tabacum HOM05D000862 ORTHO05D003588 5.6e-13 78.6 140 33.6
Rhsim04G0238100 Rhododendron simsii HOM05D000862 ORTHO05D003588 7.3e-13 78.2 143 34.3
BraA04t18762Z Brassica rapa HOM05D008029 ORTHO05D003588 9.5e-13 77.8 125 39.2
CSS0029865 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 9.5e-13 77.8 155 30.3
CSS0034808 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 9.5e-13 77.8 155 30.3
Rhsim02G0004300 Rhododendron simsii HOM05D000862 ORTHO05D003588 9.5e-13 77.8 143 34.3
THA.LOC104800920 Tarenaya hassleriana HOM05D008029 ORTHO05D003588 9.5e-13 77.8 153 37.3
BcaC02g07153 Brassica carinata HOM05D008029 ORTHO05D016094 1.2e-12 77.4 148 38.5
PGSC0003DMG400043196 Solanum tuberosum HOM05D000862 ORTHO05D003588 1.6e-12 77.0 143 32.9
AT1G05760 Arabidopsis thaliana HOM05D000862 ORTHO05D003588 3.6e-12 75.9 146 37.7
CSS0022415 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 3.6e-12 75.9 140 35.7
Carub.0001s0511 Capsella rubella HOM05D000862 ORTHO05D003588 3.6e-12 75.9 143 39.2
CAN.G575.18 Capsicum annuum HOM05D000862 ORTHO05D003588 3.6e-12 75.9 137 32.8
THA.LOC104815871 Tarenaya hassleriana HOM05D000862 ORTHO05D003588 3.6e-12 75.9 150 33.3
Actinidia13361 Actinidia chinensis HOM05D000862 ORTHO05D003588 4.7e-12 75.5 144 33.3
Nitab4.5_0001124g0110 Nicotiana tabacum HOM05D000862 ORTHO05D003588 4.7e-12 75.5 138 34.8
Rhsim04G0236500 Rhododendron simsii HOM05D000862 ORTHO05D003588 4.7e-12 75.5 137 35.0
AL1G15670 Arabidopsis lyrata HOM05D000862 ORTHO05D003588 6.2e-12 75.1 143 38.5
CAN.G749.18 Capsicum annuum HOM05D000862 ORTHO05D003588 6.2e-12 75.1 138 33.3
TAR636G0912 Trochodendron aralioides HOM05D000862 ORTHO05D003588 6.2e-12 75.1 149 32.9
Nitab4.5_0009547g0010 Nicotiana tabacum HOM05D000862 ORTHO05D003588 8.0e-12 74.7 137 34.3
CARHR005260 Cardamine hirsuta HOM05D000862 ORTHO05D003588 1.8e-11 73.6 143 37.8
Duzib151G0999 Durio zibethinus HOM05D000862 ORTHO05D003588 2.3e-11 73.2 146 34.2
CSS0039572 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 4.0e-11 72.4 149 34.2
Thhalv10008892m.g Eutrema salsugineum HOM05D000862 ORTHO05D003588 4.0e-11 72.4 143 37.8
Rhsim04G0236200 Rhododendron simsii HOM05D000862 ORTHO05D003588 4.0e-11 72.4 137 34.3
A03p24430 Brassica napus HOM05D021446 ORTHO05D016094 5.2e-11 72.0 166 33.1
BraA03t11652Z Brassica rapa HOM05D021446 ORTHO05D016094 5.2e-11 72.0 166 33.1
Peaxi162Scf00062g01918 Petunia axillaris HOM05D000862 ORTHO05D003588 5.2e-11 72.0 141 34.8
TAR636G2997 Trochodendron aralioides HOM05D000862 ORTHO05D003588 5.2e-11 72.0 140 33.6
AT1G05770 Arabidopsis thaliana HOM05D000862 ORTHO05D003588 8.9e-11 71.2 156 35.9
PGSC0003DMG400041018 Solanum tuberosum HOM05D000862 ORTHO05D003588 8.9e-11 71.2 143 33.6
vmacro08050 Vaccinium macrocarpon HOM05D000862 ORTHO05D003588 8.9e-11 71.2 140 35.7
Oeu019974.1 Olea europaea HOM05D000862 ORTHO05D003588 1.2e-10 70.9 153 34.6
Peaxi162Scf00285g00444 Petunia axillaris HOM05D000862 ORTHO05D003588 1.2e-10 70.9 120 39.2
Rhsim04G0236000 Rhododendron simsii HOM05D000862 ORTHO05D003588 1.5e-10 70.5 151 33.1
PGSC0003DMG400006098 Solanum tuberosum HOM05D000862 ORTHO05D003588 1.5e-10 70.5 140 32.1
Peaxi162Scf01044g00232 Petunia axillaris HOM05D000862 ORTHO05D003588 2.0e-10 70.1 148 33.1
EL10Ac3g05500 Beta vulgaris HOM05D008029 ORTHO05D003588 2.6e-10 69.7 160 35.0
DCAR_011947 Daucus carota HOM05D000862 ORTHO05D003588 3.4e-10 69.3 140 33.6
Sc13g0005910 Simmondsia chinensis HOM05D000862 ORTHO05D003588 3.4e-10 69.3 151 32.5
A04p33030 Brassica napus HOM05D008029 ORTHO05D003588 4.4e-10 68.9 118 38.1
AUR62004914 Chenopodium quinoa HOM05D000862 ORTHO05D003588 4.4e-10 68.9 146 34.2
PGSC0003DMG400006100 Solanum tuberosum HOM05D000862 ORTHO05D003588 5.8e-10 68.6 138 30.4
Peaxi162Scf00788g00022 Petunia axillaris HOM05D008029 ORTHO05D003588 7.5e-10 68.2 137 33.6
Rhsim04G0237600 Rhododendron simsii HOM05D000862 ORTHO05D003588 9.8e-10 67.8 139 33.1
Sp1g04570 Schrenkiella parvula HOM05D000862 ORTHO05D003588 1.7e-09 67.0 144 36.1
Lsat_1_v5_gn_6_18400 Lactuca sativa HOM05D000862 ORTHO05D003588 2.2e-09 66.6 155 31.0
Peaxi162Scf00441g00622 Petunia axillaris HOM05D000862 ORTHO05D003588 2.9e-09 66.2 145 30.3
Potri.010G144900 Populus trichocarpa HOM05D008029 ORTHO05D003588 2.9e-09 66.2 136 34.6
AUR62001043 Chenopodium quinoa HOM05D000862 ORTHO05D003588 3.7e-09 65.9 146 33.6
Nitab4.5_0001787g0050 Nicotiana tabacum HOM05D000862 ORTHO05D003588 3.7e-09 65.9 138 31.2
TAR636G1248 Trochodendron aralioides HOM05D000862 ORTHO05D003588 3.7e-09 65.9 157 31.8
TAR636G1750 Trochodendron aralioides HOM05D000862 ORTHO05D003588 3.7e-09 65.9 149 32.2
TAR636G1580 Trochodendron aralioides HOM05D000862 ORTHO05D003588 4.9e-09 65.5 135 31.1
TAR636G2528 Trochodendron aralioides HOM05D000862 ORTHO05D003588 8.3e-09 64.7 135 31.1
PGSC0003DMG400041736 Solanum tuberosum HOM05D000862 ORTHO05D003588 1.1e-08 64.3 135 35.6
Aa31LG1G8610 Aethionema arabicum HOM05D000862 ORTHO05D003588 1.9e-08 63.5 172 34.9
Dinv15175 Davidia involucrata HOM05D000862 ORTHO05D003588 1.9e-08 63.5 131 35.9
CARHR005280 Cardamine hirsuta HOM05D000862 ORTHO05D003588 2.4e-08 63.2 140 35.7
TAR636G1603 Trochodendron aralioides HOM05D000862 ORTHO05D003588 4.1e-08 62.4 145 30.3
C03p29120 Brassica napus HOM05D021446 ORTHO05D016094 5.4e-08 62.0 83 43.4
BolC3t15264H Brassica oleracea HOM05D021446 ORTHO05D016094 5.4e-08 62.0 83 43.4
BcaC01g05217 Brassica carinata HOM05D021446 ORTHO05D016094 7.0e-08 61.6 83 43.4
BcaC05g24339 Brassica carinata HOM05D000862 ORTHO05D003588 9.2e-08 61.2 143 35.7
A10p04470 Brassica napus HOM05D000862 ORTHO05D003588 1.2e-07 60.8 144 35.4
C05p04090 Brassica napus HOM05D000862 ORTHO05D003588 1.2e-07 60.8 144 35.4
BolC5t29188H Brassica oleracea HOM05D000862 ORTHO05D003588 1.2e-07 60.8 144 35.4
BraA10t42714Z Brassica rapa HOM05D000862 ORTHO05D003588 1.2e-07 60.8 144 35.4
Solyc01g006240.3 Solanum lycopersicum HOM05D000862 ORTHO05D003588 1.6e-07 60.5 147 26.5
Aa31LG1G25460 Aethionema arabicum HOM05D000402 ORTHO05D000263 2.0e-07 60.1 89 37.1
Thhalv10011239m.g Eutrema salsugineum HOM05D000956 ORTHO05D014114 2.0e-07 60.1 147 32.0
Sopen01g002240 Solanum pennellii HOM05D000862 ORTHO05D003588 2.0e-07 60.1 151 25.8
THA.LOC104806014 Tarenaya hassleriana HOM05D000956 ORTHO05D001930 2.0e-07 60.1 141 30.5
CAN.G749.17 Capsicum annuum HOM05D000002 ORTHO05D003588 3.5e-07 59.3 114 35.1
THA.LOC104810624 Tarenaya hassleriana HOM05D000956 ORTHO05D001930 4.6e-07 58.9 146 32.9
Rhsim02G0004100 Rhododendron simsii HOM05D000862 ORTHO05D003588 7.8e-07 58.2 118 33.9
BcaB01g03364 Brassica carinata HOM05D008029 ORTHO05D003588 1.0e-06 57.8 94 39.4
THA.LOC104801543 Tarenaya hassleriana HOM05D008029 ORTHO05D003588 1.0e-06 57.8 134 32.8
BolC5t29186H Brassica oleracea HOM05D000862 ORTHO05D003588 1.7e-06 57.0 123 33.3
Rhsim04G0235900 Rhododendron simsii HOM05D000862 ORTHO05D003588 3.0e-06 56.2 59 45.8
DCAR_024494 Daucus carota HOM05D008029 ORTHO05D003588 5.0e-06 55.5 142 27.5
THA.LOC104806015 Tarenaya hassleriana HOM05D000956 ORTHO05D001930 5.0e-06 55.5 143 31.5
DCAR_015146 Daucus carota HOM05D000862 ORTHO05D003588 6.6e-06 55.1 148 31.8
PGR142G2724 Punica granatum HOM05D000005 ORTHO05D000943 6.6e-06 55.1 139 30.9
vmacro08049 Vaccinium macrocarpon HOM05D000862 ORTHO05D003588 8.6e-06 54.7 183 27.9


User provided reference genes

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