Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G42580 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 1.7e-236 822.4 451 100.0
C04p70730 Brassica napus HOM05D008029 ORTHO05D016094 6.2e-61 239.2 323 45.8
BolC4t28573H Brassica oleracea HOM05D008029 ORTHO05D016094 1.1e-60 238.4 339 44.2
AL4G42600 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 4.9e-58 229.6 256 53.1
AT2G43740 Arabidopsis thaliana HOM05D008029 ORTHO05D003588 1.1e-54 218.4 236 54.2
Aa31LG1G25450 Aethionema arabicum HOM05D008029 ORTHO05D003588 3.6e-45 186.8 353 38.5
Carub.0004s2627 Capsella rubella HOM05D008029 ORTHO05D003588 1.1e-44 185.3 217 50.7
AT2G43730 Arabidopsis thaliana HOM05D008029 ORTHO05D003588 9.0e-44 182.2 226 48.7
BcaB06g29345 Brassica carinata HOM05D008029 ORTHO05D003588 1.9e-38 164.5 225 47.6
BraA04t18762Z Brassica rapa HOM05D008029 ORTHO05D003588 1.4e-36 158.3 224 46.0
C03p29130 Brassica napus HOM05D008029 ORTHO05D003588 1.7e-34 151.4 226 44.7
BolC3t15265H Brassica oleracea HOM05D008029 ORTHO05D003588 1.7e-34 151.4 226 44.7
BcaC01g05216 Brassica carinata HOM05D008029 ORTHO05D003588 1.1e-33 148.7 226 44.2
BraA03t11654Z Brassica rapa HOM05D008029 ORTHO05D003588 1.9e-33 147.9 226 44.2
A04p33030 Brassica napus HOM05D008029 ORTHO05D003588 4.2e-33 146.7 203 47.3
Thhalv10001798m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 4.2e-33 146.7 229 43.7
A03p24450 Brassica napus HOM05D008029 ORTHO05D003588 1.2e-32 145.2 226 43.8
Thhalv10001732m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 2.7e-32 144.1 164 51.2
BcaB01g03363 Brassica carinata HOM05D008029 ORTHO05D003588 3.5e-32 143.7 152 55.3
BcaC02g07153 Brassica carinata HOM05D008029 ORTHO05D016094 3.5e-32 143.7 154 50.6
AL4G42590 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 3.9e-31 140.2 186 47.3
Sp4g25800 Schrenkiella parvula HOM05D008029 ORTHO05D016094 3.3e-30 137.1 154 48.1
BraA03t11653Z Brassica rapa HOM05D008029 ORTHO05D003588 6.2e-29 132.9 145 51.7
CARHR050270 Cardamine hirsuta HOM05D008029 ORTHO05D003588 6.2e-29 132.9 170 47.6
AL4G42570 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 8.1e-29 132.5 172 47.7
A03p24440 Brassica napus HOM05D008029 ORTHO05D003588 4.0e-28 130.2 145 51.0
A03p24430 Brassica napus HOM05D021446 ORTHO05D016094 1.5e-27 128.3 182 41.8
BraA03t11652Z Brassica rapa HOM05D021446 ORTHO05D016094 1.5e-27 128.3 182 41.8
Nitab4.5_0001787g0070 Nicotiana tabacum HOM05D000862 ORTHO05D003588 1.1e-25 122.1 323 30.0
BolC4t22100H Brassica oleracea HOM05D008029 ORTHO05D003588 1.9e-25 121.3 162 48.1
A05p03950 Brassica napus HOM05D008029 ORTHO05D003588 2.5e-25 120.9 182 43.4
A03p46150 Brassica napus HOM05D008029 ORTHO05D003588 3.2e-25 120.6 172 46.5
BraA05t19383Z Brassica rapa HOM05D008029 ORTHO05D003588 3.2e-25 120.6 180 44.4
BcaC02g07154 Brassica carinata HOM05D008029 ORTHO05D016094 9.3e-25 119.0 136 47.1
BraA05t19382Z Brassica rapa HOM05D008029 ORTHO05D003588 1.2e-24 118.6 155 46.5
BcaB01g03364 Brassica carinata HOM05D008029 ORTHO05D003588 1.6e-24 118.2 150 48.0
Thhalv10010901m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 2.1e-24 117.9 186 41.4
AL4G42610 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 8.7e-23 112.5 141 45.4
A04p33040 Brassica napus HOM05D008029 ORTHO05D003588 8.7e-23 112.5 165 41.8
BolC4t28575H Brassica oleracea HOM05D008029 ORTHO05D003588 2.5e-22 110.9 156 44.2
Nitab4.5_0009547g0010 Nicotiana tabacum HOM05D000862 ORTHO05D003588 3.3e-22 110.5 317 29.0
SGA_v2.0_scaffold480G52303 Striga asiatica HOM05D000862 ORTHO05D003588 3.3e-22 110.5 319 30.1
BraA04t18763Z Brassica rapa HOM05D008029 ORTHO05D003588 1.6e-21 108.2 165 41.2
C04p70740 Brassica napus HOM05D008029 ORTHO05D003588 4.8e-21 106.7 166 41.6
Sp7g10340 Schrenkiella parvula HOM05D008029 ORTHO05D003588 1.1e-20 105.5 153 43.1
A06p31150 Brassica napus HOM05D008029 ORTHO05D003588 1.4e-20 105.1 170 42.9
Eucgr.E04097 Eucalyptus grandis HOM05D000956 ORTHO05D000943 1.4e-20 105.1 276 33.0
BcaC02g07152 Brassica carinata HOM05D008029 ORTHO05D003588 1.8e-20 104.8 166 41.6
BolC4t28574H Brassica oleracea HOM05D008029 ORTHO05D003588 1.8e-20 104.8 166 41.6
MSTRG.21770 Avicennia marina HOM05D000862 ORTHO05D003588 3.1e-20 104.0 156 39.7
Rhsim04G0237600 Rhododendron simsii HOM05D000862 ORTHO05D003588 4.0e-20 103.6 267 31.1
Eucgr.F01690 Eucalyptus grandis HOM05D000862 ORTHO05D000943 2.0e-19 101.3 274 31.4
C03p29140 Brassica napus HOM05D008029 ORTHO05D003588 3.4e-19 100.5 188 39.9
C03p29120 Brassica napus HOM05D021446 ORTHO05D016094 5.8e-19 99.8 111 46.8
BolC3t15264H Brassica oleracea HOM05D021446 ORTHO05D016094 5.8e-19 99.8 111 46.8
A05p03940 Brassica napus HOM05D008029 ORTHO05D003588 1.0e-18 99.0 130 43.8
BcaC01g05217 Brassica carinata HOM05D021446 ORTHO05D016094 1.7e-18 98.2 106 48.1
BolC3t15266H Brassica oleracea HOM05D008029 ORTHO05D003588 2.9e-18 97.4 188 39.4
MSTRG.21769 Avicennia marina HOM05D000862 ORTHO05D003588 3.8e-18 97.1 170 36.5
Migut.N00044 Erythranthe guttata HOM05D000862 ORTHO05D003588 4.2e-17 93.6 153 36.6
Solyc09g083030.1 Solanum lycopersicum HOM05D000862 ORTHO05D003588 7.1e-17 92.8 159 35.8
Sopen09g031900 Solanum pennellii HOM05D000862 ORTHO05D003588 7.1e-17 92.8 159 35.8
EL10Ac3g05502 Beta vulgaris HOM05D008029 ORTHO05D003588 6.1e-16 89.7 156 34.6
CAN.G749.24 Capsicum annuum HOM05D000862 ORTHO05D003588 6.1e-16 89.7 157 37.6
Sopen09g031890 Solanum pennellii HOM05D000862 ORTHO05D003588 6.1e-16 89.7 153 37.9
BcaC02g07151 Brassica carinata HOM05D000384 ORTHO05D000468 2.3e-15 87.8 135 40.7
PGSC0003DMG400006100 Solanum tuberosum HOM05D000862 ORTHO05D003588 2.3e-15 87.8 154 35.1
Thhalv10009313m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 3.0e-15 87.4 155 36.8
Oeu016489.1 Olea europaea HOM05D007843 ORTHO05D003639 3.0e-15 87.4 153 36.6
CAN.G749.20 Capsicum annuum HOM05D000862 ORTHO05D003588 3.9e-15 87.0 156 37.2
Rhsim04G0238100 Rhododendron simsii HOM05D000862 ORTHO05D003588 5.1e-15 86.7 157 35.0
Duzib151G0999 Durio zibethinus HOM05D000862 ORTHO05D003588 8.7e-15 85.9 154 37.0
PGR142G2724 Punica granatum HOM05D000005 ORTHO05D000943 8.7e-15 85.9 280 30.0
CAN.G749.18 Capsicum annuum HOM05D000862 ORTHO05D003588 1.5e-14 85.1 159 34.0
BcaC01g05215 Brassica carinata HOM05D008029 ORTHO05D003588 1.9e-14 84.7 151 36.4
PGSC0003DMG400041018 Solanum tuberosum HOM05D000862 ORTHO05D003588 1.9e-14 84.7 177 32.8
Solyc09g083020.1 Solanum lycopersicum HOM05D000862 ORTHO05D003588 2.5e-14 84.3 151 36.4
Dinv15179 Davidia involucrata HOM05D000862 ORTHO05D003588 3.3e-14 84.0 185 33.5
BcaC05g28874 Brassica carinata HOM05D000956 ORTHO05D001930 4.3e-14 83.6 342 25.1
Peaxi162Scf00062g01918 Petunia axillaris HOM05D000862 ORTHO05D003588 4.3e-14 83.6 167 35.9
A09p45570 Brassica napus HOM05D008029 ORTHO05D003588 5.7e-14 83.2 136 41.2
C04p70750 Brassica napus HOM05D000384 ORTHO05D000468 5.7e-14 83.2 135 39.3
BraA09t40018Z Brassica rapa HOM05D008029 ORTHO05D003588 5.7e-14 83.2 136 41.2
Rhsim02G0004300 Rhododendron simsii HOM05D000862 ORTHO05D003588 5.7e-14 83.2 154 32.5
TAR636G2997 Trochodendron aralioides HOM05D000862 ORTHO05D003588 7.4e-14 82.8 164 36.0
BcaB06g25745 Brassica carinata HOM05D000956 ORTHO05D001930 1.3e-13 82.0 338 25.4
CSS0039572 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 2.2e-13 81.3 161 35.4
BolC5t33741H Brassica oleracea HOM05D000956 ORTHO05D001930 2.8e-13 80.9 342 24.6
Eucgr.I02558 Eucalyptus grandis HOM05D000862 ORTHO05D000943 2.8e-13 80.9 338 28.7
Rhsim04G0236500 Rhododendron simsii HOM05D000862 ORTHO05D003588 2.8e-13 80.9 155 34.2
C05p49840 Brassica napus HOM05D000956 ORTHO05D001930 3.7e-13 80.5 315 25.7
Nitab4.5_0001124g0110 Nicotiana tabacum HOM05D000862 ORTHO05D003588 3.7e-13 80.5 182 29.7
PGR142G3334 Punica granatum HOM05D000005 ORTHO05D000943 3.7e-13 80.5 337 27.9
CSS0022415 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 6.3e-13 79.7 157 36.9
Carub.0001s0511 Capsella rubella HOM05D000862 ORTHO05D003588 6.3e-13 79.7 157 38.2
CAN.G575.18 Capsicum annuum HOM05D000862 ORTHO05D003588 6.3e-13 79.7 157 33.1
Rhsim04G0236000 Rhododendron simsii HOM05D000862 ORTHO05D003588 8.2e-13 79.3 164 34.1
TAR636G2528 Trochodendron aralioides HOM05D000862 ORTHO05D003588 1.1e-12 79.0 150 36.7
Sp1g04570 Schrenkiella parvula HOM05D000862 ORTHO05D003588 1.4e-12 78.6 157 35.7
Aqoxy1G02186 Aquilegia oxysepala HOM05D000862 ORTHO05D003588 1.8e-12 78.2 152 35.5
TAR636G1580 Trochodendron aralioides HOM05D000862 ORTHO05D003588 1.8e-12 78.2 152 36.8
DCAR_026997 Daucus carota HOM05D000862 ORTHO05D003588 2.4e-12 77.8 157 33.1
AUR62016202 Chenopodium quinoa HOM05D008029 ORTHO05D003588 3.1e-12 77.4 149 33.6
Peaxi162Scf00788g00022 Petunia axillaris HOM05D008029 ORTHO05D003588 3.1e-12 77.4 145 31.0
Rhsim04G0236200 Rhododendron simsii HOM05D000862 ORTHO05D003588 4.1e-12 77.0 174 32.2
AT1G05770 Arabidopsis thaliana HOM05D000862 ORTHO05D003588 6.9e-12 76.3 168 34.5
PGSC0003DMG400041736 Solanum tuberosum HOM05D000862 ORTHO05D003588 9.0e-12 75.9 144 35.4
PGSC0003DMG400043196 Solanum tuberosum HOM05D000862 ORTHO05D003588 9.0e-12 75.9 152 32.2
THA.LOC104815871 Tarenaya hassleriana HOM05D000862 ORTHO05D003588 9.0e-12 75.9 163 31.3
CSS0042531 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 1.2e-11 75.5 149 36.2
Peaxi162Scf01044g00232 Petunia axillaris HOM05D000862 ORTHO05D003588 1.2e-11 75.5 155 33.5
CAN.G140.49 Capsicum annuum HOM05D000862 ORTHO05D003588 2.0e-11 74.7 147 34.0
TAR636G0883 Trochodendron aralioides HOM05D000862 ORTHO05D003588 2.0e-11 74.7 151 33.1
CSS0041630 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 2.6e-11 74.3 149 36.2
TAR636G3530 Trochodendron aralioides HOM05D000862 ORTHO05D003588 2.6e-11 74.3 157 35.7
Solyc01g006240.3 Solanum lycopersicum HOM05D000862 ORTHO05D003588 3.4e-11 73.9 154 31.2
Sopen01g002240 Solanum pennellii HOM05D000862 ORTHO05D003588 3.4e-11 73.9 158 32.3
TAR636G1248 Trochodendron aralioides HOM05D000862 ORTHO05D003588 3.4e-11 73.9 159 32.7
DCAR_026995 Daucus carota HOM05D000862 ORTHO05D003588 4.5e-11 73.6 157 33.8
Lsat_1_v5_gn_6_18400 Lactuca sativa HOM05D000862 ORTHO05D003588 4.5e-11 73.6 149 34.2
Lsat_1_v5_gn_6_18420 Lactuca sativa HOM05D008029 ORTHO05D003588 4.5e-11 73.6 150 32.0
TAR636G1603 Trochodendron aralioides HOM05D000862 ORTHO05D003588 4.5e-11 73.6 149 34.2
TAR636G2022 Trochodendron aralioides HOM05D000862 ORTHO05D003588 5.9e-11 73.2 156 34.6
PGSC0003DMG400006098 Solanum tuberosum HOM05D000862 ORTHO05D003588 7.7e-11 72.8 159 31.4
TAR636G0362 Trochodendron aralioides HOM05D000862 ORTHO05D003588 7.7e-11 72.8 149 33.6
Actinidia13361 Actinidia chinensis HOM05D000862 ORTHO05D003588 1.0e-10 72.4 151 30.5
HanXRQChr12g0379721 Helianthus annuus HOM05D000862 ORTHO05D003588 1.0e-10 72.4 149 31.5
Oeu019974.1 Olea europaea HOM05D000862 ORTHO05D003588 1.0e-10 72.4 154 36.4
Thhalv10001737m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 1.3e-10 72.0 115 39.1
Rhsim02G0004100 Rhododendron simsii HOM05D000862 ORTHO05D003588 1.7e-10 71.6 128 38.3
CARHR005280 Cardamine hirsuta HOM05D000862 ORTHO05D003588 2.2e-10 71.2 164 33.5
DCAR_011947 Daucus carota HOM05D000862 ORTHO05D003588 2.9e-10 70.9 150 31.3
BcaC05g24342 Brassica carinata HOM05D000862 ORTHO05D003588 3.8e-10 70.5 138 36.2
CAN.G749.21 Capsicum annuum HOM05D000862 ORTHO05D003588 3.8e-10 70.5 158 34.2
Lsat_1_v5_gn_6_16781 Lactuca sativa HOM05D000862 ORTHO05D003588 5.0e-10 70.1 150 30.7
CARHR099620 Cardamine hirsuta HOM05D008029 ORTHO05D003588 6.5e-10 69.7 70 50.0
THA.LOC104800919 Tarenaya hassleriana HOM05D000862 ORTHO05D003588 6.5e-10 69.7 164 31.7
CSS0029865 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 1.1e-09 68.9 168 32.1
CSS0034808 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 1.1e-09 68.9 168 32.1
PSO210G7120 Papaver somniferum HOM05D000862 ORTHO05D000943 1.1e-09 68.9 197 31.5
vmacro08050 Vaccinium macrocarpon HOM05D000862 ORTHO05D003588 1.1e-09 68.9 156 32.1
C05p04080 Brassica napus HOM05D008029 ORTHO05D003588 1.9e-09 68.2 137 35.0
TAR636G0912 Trochodendron aralioides HOM05D000862 ORTHO05D003588 1.9e-09 68.2 152 32.9
ECA233G4346 Erigeron canadensis HOM05D000862 ORTHO05D003588 2.5e-09 67.8 160 29.4
Eucgr.I02524 Eucalyptus grandis HOM05D000862 ORTHO05D000943 2.5e-09 67.8 280 30.4
TAR636G1750 Trochodendron aralioides HOM05D000862 ORTHO05D003588 3.2e-09 67.4 152 32.9
AUR62001043 Chenopodium quinoa HOM05D000862 ORTHO05D003588 4.2e-09 67.0 157 32.5
PSO210G4227 Papaver somniferum HOM05D000862 ORTHO05D000943 5.5e-09 66.6 153 32.7
Peaxi162Scf00441g00622 Petunia axillaris HOM05D000862 ORTHO05D003588 5.5e-09 66.6 146 34.2
PGSC0003DMG400040105 Solanum tuberosum HOM05D000862 ORTHO05D003588 5.5e-09 66.6 160 32.5
AUR62039285 Chenopodium quinoa HOM05D008029 ORTHO05D003588 7.2e-09 66.2 143 32.2
Nitab4.5_0001568g0080 Nicotiana tabacum HOM05D000862 ORTHO05D003588 7.2e-09 66.2 150 34.0
EL10Ac3g05500 Beta vulgaris HOM05D008029 ORTHO05D003588 9.4e-09 65.9 180 31.7
BcaC02g12367 Brassica carinata HOM05D008029 ORTHO05D003588 9.4e-09 65.9 92 42.4
C04p04700 Brassica napus HOM05D008029 ORTHO05D003588 9.4e-09 65.9 92 42.4
Aa31LG1G25460 Aethionema arabicum HOM05D000402 ORTHO05D000263 1.2e-08 65.5 143 38.5
Eucgr.I02547 Eucalyptus grandis HOM05D000862 ORTHO05D000943 1.2e-08 65.5 338 27.2
Potri.010G144900 Populus trichocarpa HOM05D008029 ORTHO05D003588 1.2e-08 65.5 152 31.6
HanXRQChr02g0042151 Helianthus annuus HOM05D000862 ORTHO05D000943 2.7e-08 64.3 297 25.9
THA.LOC104810624 Tarenaya hassleriana HOM05D000956 ORTHO05D001930 2.7e-08 64.3 322 22.7
A04p30560 Brassica napus HOM05D000956 ORTHO05D001930 3.6e-08 63.9 320 23.8
AUR62004914 Chenopodium quinoa HOM05D000862 ORTHO05D003588 4.6e-08 63.5 152 29.6
Nitab4.5_0001124g0040 Nicotiana tabacum HOM05D000862 ORTHO05D003588 4.6e-08 63.5 150 31.3
Aa31LG1G8610 Aethionema arabicum HOM05D000862 ORTHO05D003588 6.1e-08 63.2 157 32.5
Ah.06g187570 Amaranthus hybridus HOM05D000056 ORTHO05D000019 7.9e-08 62.8 170 29.4
Aa31LG7G4300 Aethionema arabicum HOM05D000862 ORTHO05D000943 1.4e-07 62.0 389 23.7
Aqoxy2G02742 Aquilegia oxysepala HOM05D000862 ORTHO05D003588 2.3e-07 61.2 164 30.5
ECA232G1312 Erigeron canadensis HOM05D000041 ORTHO05D000452 2.3e-07 61.2 204 29.9
Nn7g36896 Nelumbo nucifera HOM05D008029 ORTHO05D003588 3.0e-07 60.8 105 36.2
Ah.04g156870 Amaranthus hybridus HOM05D008029 ORTHO05D003588 5.1e-07 60.1 162 29.0
PGR142G3142 Punica granatum HOM05D000862 ORTHO05D000943 5.1e-07 60.1 344 23.5
Rhsim04G0235800 Rhododendron simsii HOM05D000862 ORTHO05D003588 6.7e-07 59.7 84 40.5
Rhsim04G0238300 Rhododendron simsii HOM05D000862 ORTHO05D003588 6.7e-07 59.7 84 40.5
PGSC0003DMG400036830 Solanum tuberosum HOM05D000862 ORTHO05D003588 1.1e-06 58.9 171 29.2
BcaB06g25751 Brassica carinata HOM05D001329 ORTHO05D002618 2.0e-06 58.2 141 29.8
A08p03410 Brassica napus HOM05D000956 ORTHO05D001930 2.0e-06 58.2 139 28.8
BraA08t32373Z Brassica rapa HOM05D000956 ORTHO05D001930 2.0e-06 58.2 139 28.8
AUR62004918 Chenopodium quinoa HOM05D000448 ORTHO05D000291 2.5e-06 57.8 99 33.3
Rhsim04G0235700 Rhododendron simsii HOM05D000862 ORTHO05D003588 2.5e-06 57.8 83 39.8
Eucgr.I00640 Eucalyptus grandis HOM05D000862 ORTHO05D000943 3.3e-06 57.4 173 29.5
DCAR_024494 Daucus carota HOM05D008029 ORTHO05D003588 5.7e-06 56.6 151 26.5
Peaxi162Scf00285g00444 Petunia axillaris HOM05D000862 ORTHO05D003588 7.4e-06 56.2 130 32.3
Nitab4.5_0000941g0040 Nicotiana tabacum HOM05D000862 ORTHO05D003588 9.7e-06 55.8 157 28.7


User provided reference genes

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