Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G42340 Arabidopsis lyrata HOM05D007459 ORTHO05D009234 2.0e-84 315.8 170 100.0
AT2G43540 Arabidopsis thaliana HOM05D007459 ORTHO05D009234 6.7e-77 290.8 170 91.8
Carub.0004s2600 Capsella rubella HOM05D007459 ORTHO05D009234 1.4e-74 283.1 173 89.0
Thhalv10001662m.g Eutrema salsugineum HOM05D007459 ORTHO05D009234 1.2e-73 280.0 171 88.9
Sp4g25650 Schrenkiella parvula HOM05D007459 ORTHO05D009234 1.1e-71 273.5 174 85.6
A04p32820 Brassica napus HOM05D007459 ORTHO05D009234 1.4e-69 266.5 170 85.3
BraA04t18744Z Brassica rapa HOM05D007459 ORTHO05D009234 1.4e-69 266.5 170 85.3
C04p70510 Brassica napus HOM05D007459 ORTHO05D009234 1.2e-68 263.5 170 85.3
CARHR138660 Cardamine hirsuta HOM05D007459 ORTHO05D009234 1.2e-68 263.5 171 84.2
BcaC02g07169 Brassica carinata HOM05D007459 ORTHO05D009234 5.7e-68 261.2 170 84.1
BcaC02g07170 Brassica carinata HOM05D007459 ORTHO05D009234 5.7e-68 261.2 170 84.1
BolC4t28553H Brassica oleracea HOM05D007459 ORTHO05D009234 5.7e-68 261.2 170 84.1
BcaB06g29324 Brassica carinata HOM05D007459 ORTHO05D009234 2.2e-67 259.2 170 82.9
BolC4t28554H Brassica oleracea HOM05D007459 ORTHO05D009234 1.3e-64 250.0 160 85.0
C04p70520 Brassica napus HOM05D007459 ORTHO05D009234 2.9e-64 248.8 160 84.4
Aa31LG1G25280 Aethionema arabicum HOM05D007459 ORTHO05D009234 1.2e-62 243.4 167 75.4
THA.LOC104805901 Tarenaya hassleriana HOM05D007459 ORTHO05D009234 1.3e-59 233.4 174 73.0
BcaC02g07168 Brassica carinata HOM05D007459 ORTHO05D009234 5.9e-57 224.6 145 84.8
CiPaw.01G173000 Carya illinoinensis HOM05D007459 ORTHO05D009234 4.1e-50 201.8 171 62.0
Cfa015229 Carpinus fangiana HOM05D007459 ORTHO05D009234 3.5e-49 198.7 169 62.1
Haze_01404 Corylus avellana HOM05D007459 ORTHO05D009234 3.5e-49 198.7 169 62.7
QL10p052586 Quercus lobata HOM05D007459 ORTHO05D009234 3.5e-49 198.7 172 63.4
Haze_01410 Corylus avellana HOM05D007459 ORTHO05D009234 1.5e-47 193.4 169 61.5
Duzib151G0483 Durio zibethinus HOM05D007459 ORTHO05D009234 3.6e-46 188.7 174 59.8
Lj6A129T18 Lonicera japonica HOM05D007459 ORTHO05D009234 3.6e-46 188.7 173 58.4
Ciclev10022478m.g Citrus clementina HOM05D007459 ORTHO05D009234 4.0e-45 185.3 182 56.6
MD04G1047100 Malus domestica HOM05D007459 ORTHO05D009234 4.0e-45 185.3 169 60.4
Manes.04G050800 Manihot esculenta HOM05D007459 ORTHO05D009234 4.0e-45 185.3 170 61.2
Hma1.2p1_2359F.1_g320593 Hydrangea macrophylla HOM05D007459 ORTHO05D009234 8.9e-45 184.1 171 56.7
Dinv44169 Davidia involucrata HOM05D007459 ORTHO05D009234 1.5e-44 183.3 170 57.6
PGR142G0909 Punica granatum HOM05D007459 ORTHO05D009234 2.6e-44 182.6 175 56.6
Prupe.1G201700 Prunus persica HOM05D007459 ORTHO05D009234 3.4e-44 182.2 169 58.6
CSS0017730 Camellia sinensis var. sinensis HOM05D007459 ORTHO05D009234 4.4e-44 181.8 172 55.2
Cc03_g12180 Coffea canephora HOM05D007459 ORTHO05D009234 9.8e-44 180.6 175 53.7
Thecc.04G171000 Theobroma cacao HOM05D007459 ORTHO05D009234 1.3e-43 180.3 174 56.3
Sabra07G0109100 Salix brachista HOM05D007459 ORTHO05D009234 1.7e-43 179.9 174 56.9
Hma1.2p1_0554F.1_g177940 Hydrangea macrophylla HOM05D007459 ORTHO05D009234 2.2e-43 179.5 171 55.0
CANSAT56G1213 Cannabis sativa HOM05D007459 ORTHO05D009234 2.9e-43 179.1 171 56.7
Gohir.D02G110600 Gossypium hirsutum HOM05D007459 ORTHO05D009234 2.9e-43 179.1 174 56.3
Gorai.005G125500 Gossypium raimondii HOM05D007459 ORTHO05D009234 2.9e-43 179.1 174 56.3
RcHm_v2.0_Chr2g0138101 Rosa chinensis HOM05D007459 ORTHO05D009234 3.7e-43 178.7 169 54.4
Atru.chr4.1350 Acer truncatum HOM05D007459 ORTHO05D009234 8.3e-43 177.6 172 55.8
Potri.007G134400 Populus trichocarpa HOM05D007459 ORTHO05D009234 1.9e-42 176.4 174 54.0
Gohir.A02G092500 Gossypium hirsutum HOM05D007459 ORTHO05D009234 3.2e-42 175.6 174 55.7
Solyc06g073170.1 Solanum lycopersicum HOM05D007459 ORTHO05D009234 3.2e-42 175.6 169 56.2
Sopen06g029540 Solanum pennellii HOM05D007459 ORTHO05D009234 3.2e-42 175.6 169 56.2
PGSC0003DMG400027018 Solanum tuberosum HOM05D007459 ORTHO05D009234 4.1e-42 175.3 169 56.2
SGA_v2.0_scaffold25G10994 Striga asiatica HOM05D007459 ORTHO05D009234 5.4e-42 174.9 173 57.8
Nn1g09730 Nelumbo nucifera HOM05D007459 ORTHO05D009234 7.0e-42 174.5 170 52.4
TAR362G1157 Trochodendron aralioides HOM05D007459 ORTHO05D009234 9.2e-42 174.1 170 54.7
MELO3C017778.2 Cucumis melo HOM05D007459 ORTHO05D009234 1.2e-41 173.7 169 56.2
Nitab4.5_0013525g0010 Nicotiana tabacum HOM05D007459 ORTHO05D009234 1.2e-41 173.7 170 54.7
TWI38G0757 Tripterygium wilfordii HOM05D007459 ORTHO05D009234 1.3e-40 170.2 159 57.2
FvH4_6g31340 Fragaria vesca HOM05D007459 ORTHO05D009234 3.0e-40 169.1 168 53.6
FAN14G2685 Fragaria x ananassa HOM05D007459 ORTHO05D009234 3.0e-40 169.1 168 53.6
Peaxi162Scf00180g00063 Petunia axillaris HOM05D007459 ORTHO05D009234 3.9e-40 168.7 168 53.6
Haze_01399 Corylus avellana HOM05D007459 ORTHO05D009234 5.0e-40 168.3 154 58.4
FAN05G5726 Fragaria x ananassa HOM05D007459 ORTHO05D009234 6.6e-40 167.9 168 53.0
COL.COLO4_28394 Corchorus olitorius HOM05D007459 ORTHO05D009234 8.6e-40 167.5 175 54.3
Lalb_Chr22g0352011 Lupinus albus HOM05D007459 ORTHO05D009234 8.6e-40 167.5 169 52.1
Sc06g0007410 Simmondsia chinensis HOM05D007459 ORTHO05D009234 8.6e-40 167.5 168 54.8
Nitab4.5_0002553g0080 Nicotiana tabacum HOM05D007459 ORTHO05D009234 5.6e-39 164.9 170 53.5
CsaV3_4G002640 Cucumis sativus L. HOM05D007459 ORTHO05D009234 2.1e-38 162.9 164 54.9
Sed0000488 Sechium edule HOM05D007459 ORTHO05D009234 2.1e-38 162.9 168 53.0
vmacro06567 Vaccinium macrocarpon HOM05D007459 ORTHO05D009234 5.2e-37 158.3 175 50.3
unitig_85.g27223 Utricularia gibba HOM05D007459 ORTHO05D009234 1.2e-36 157.1 168 51.8
Rhsim09G0013300 Rhododendron simsii HOM05D007459 ORTHO05D009234 2.0e-36 156.4 173 48.0
Migut.N03078 Erythranthe guttata HOM05D007459 ORTHO05D009234 2.6e-36 156.0 169 50.9
Lsat_1_v5_gn_8_158021 Lactuca sativa HOM05D007459 ORTHO05D009234 7.5e-36 154.5 167 47.9
HanXRQChr14g0433791 Helianthus annuus HOM05D007459 ORTHO05D009234 6.4e-35 151.4 166 47.0
Psat5g291760 Pisum sativum HOM05D007459 ORTHO05D009234 9.2e-34 147.5 170 48.2
MBI11_g23942_MAGBIO Magnolia biondii HOM05D004197 ORTHO05D004975 3.5e-33 145.6 160 50.0
TPR.G6565 Trifolium pratense HOM05D007459 ORTHO05D009234 3.5e-33 145.6 168 48.2
Lj3g0013618 Lotus japonicus HOM05D007459 ORTHO05D009234 6.0e-33 144.8 170 48.8
TPR.G13012 Trifolium pratense HOM05D007459 ORTHO05D009234 6.0e-33 144.8 170 48.2
Ca_01236_v3 Cicer arietinum L. HOM05D007459 ORTHO05D009234 6.6e-32 141.4 170 45.9
Medtr2g099440 Medicago truncatula HOM05D007459 ORTHO05D009234 4.3e-31 138.7 170 47.1
Os04g0495300 Oryza sativa ssp. japonica HOM05D007459 ORTHO05D009234 7.3e-31 137.9 167 44.3
Phvul.005G155700 Phaseolus vulgaris HOM05D007459 ORTHO05D009234 3.6e-30 135.6 166 44.0
Glyma.13G346600 Glycine max HOM05D007459 ORTHO05D009234 2.0e-28 129.8 168 44.0
Actinidia27099 Actinidia chinensis HOM05D007459 ORTHO05D009234 5.8e-28 128.3 142 50.7
HPP92_004524 Vanilla planifolia HOM05D007459 ORTHO05D009234 5.8e-28 128.3 167 44.9
EL10Ac3g06032 Beta vulgaris HOM05D007459 ORTHO05D009234 9.9e-28 127.5 169 45.0
DCAR_028411 Daucus carota HOM05D007459 ORTHO05D009234 1.3e-27 127.1 166 41.6
ATR0743G068 Amborella trichopoda HOM05D007459 ORTHO05D009234 2.2e-27 126.3 168 46.4
ClCG07G015090 Citrullus lanatus HOM05D007459 ORTHO05D009234 3.8e-27 125.6 168 45.2
Zm00001eb078650 Zea mays HOM05D007459 ORTHO05D009234 1.1e-26 124.0 167 46.1
AUR62002368 Chenopodium quinoa HOM05D007459 ORTHO05D009234 7.1e-26 121.3 168 44.0
Duzib151G0582 Durio zibethinus HOM05D007459 ORTHO05D009234 6.0e-25 118.2 123 56.1
CDE09G0571 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 7.8e-25 117.9 151 43.0
AUR62023818 Chenopodium quinoa HOM05D007459 ORTHO05D009234 1.7e-24 116.7 168 42.9
Eucgr.L02147 Eucalyptus grandis HOM05D007459 ORTHO05D009234 5.6e-23 111.7 146 43.8
HPP92_004533 Vanilla planifolia HOM05D007459 ORTHO05D009234 8.9e-21 104.4 130 47.7
Ah.07g202500 Amaranthus hybridus HOM05D007459 ORTHO05D009234 4.2e-18 95.5 169 38.5
EL10Ac9g22812 Beta vulgaris HOM05D007459 ORTHO05D009234 4.6e-17 92.0 151 40.4
EL10Ac5g11171 Beta vulgaris HOM05D007459 ORTHO05D009234 3.9e-16 89.0 111 45.0
SEGI_40343 Sequoiadendron giganteum HOM05D007459 ORTHO05D009234 1.4e-13 80.5 133 36.8
EL10Ac4g10228 Beta vulgaris HOM05D007459 ORTHO05D009234 3.8e-11 72.4 138 31.2
Pp3c17_9330 Physcomitrium patens HOM05D007459 ORTHO05D009234 6.4e-11 71.6 138 32.6
EL10Ac6g13927 Beta vulgaris HOM05D000045 ORTHO05D010054 1.6e-09 67.0 63 54.0
Mapoly0038s0008 Marchantia polymorpha HOM05D007459 ORTHO05D009234 6.0e-09 65.1 180 27.8
ECA238G4467 Erigeron canadensis HOM05D007459 ORTHO05D009234 1.8e-08 63.5 71 46.5
EL10Ac3g06136 Beta vulgaris HOM05D007459 ORTHO05D009234 6.7e-08 61.6 87 42.5


User provided reference genes

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