Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G42300 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 1.6e-48 195.7 90 100.0
AT2G43510 Arabidopsis thaliana HOM05D007394 ORTHO05D009996 8.0e-45 183.3 90 93.3
AL2G24960 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 2.4e-41 171.8 85 90.6
Carub.0004s2597 Capsella rubella HOM05D007394 ORTHO05D009996 6.0e-40 167.2 84 88.1
CARHR138610 Cardamine hirsuta HOM05D007394 ORTHO05D009996 1.0e-39 166.4 91 86.8
Sp4g25600 Schrenkiella parvula HOM05D007394 ORTHO05D009996 5.0e-39 164.1 90 83.3
A05p03820 Brassica napus HOM05D007394 ORTHO05D009996 4.3e-38 161.0 83 84.3
BcaB02g08934 Brassica carinata HOM05D007394 ORTHO05D009996 5.6e-38 160.6 83 84.3
Thhalv10001746m.g Eutrema salsugineum HOM05D007394 ORTHO05D009996 1.6e-37 159.1 90 81.1
BcaC02g12386 Brassica carinata HOM05D007394 ORTHO05D009996 8.0e-37 156.8 83 81.9
C04p04520 Brassica napus HOM05D007394 ORTHO05D009996 8.0e-37 156.8 83 81.9
BcaC02g12384 Brassica carinata HOM05D007394 ORTHO05D009996 1.2e-35 152.9 83 81.9
C04p04540 Brassica napus HOM05D007394 ORTHO05D009996 1.2e-35 152.9 83 81.9
BolC4t22087H Brassica oleracea HOM05D007394 ORTHO05D009996 1.2e-35 152.9 83 81.9
Sp4g25610 Schrenkiella parvula HOM05D007394 ORTHO05D009996 2.4e-33 145.2 86 74.4
CARHR138620 Cardamine hirsuta HOM05D007394 ORTHO05D009996 8.6e-31 136.7 92 65.2
THA.LOC104803941 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 9.5e-30 133.3 83 71.1
A04p32800 Brassica napus HOM05D007394 ORTHO05D009996 2.1e-29 132.1 82 72.0
BraA04t18742Z Brassica rapa HOM05D007394 ORTHO05D009996 2.1e-29 132.1 82 72.0
THA.LOC104803932 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 3.6e-29 131.3 83 69.9
BcaB02g08929 Brassica carinata HOM05D007394 ORTHO05D009996 6.2e-29 130.6 90 66.7
BolC4t22090H Brassica oleracea HOM05D007394 ORTHO05D009996 1.1e-28 129.8 85 63.5
BcaC02g12378 Brassica carinata HOM05D007394 ORTHO05D009996 1.4e-28 129.4 87 67.8
BcaB02g10434 Brassica carinata HOM05D007394 ORTHO05D009996 1.8e-28 129.0 86 67.4
C04p70500 Brassica napus HOM05D007394 ORTHO05D009996 1.8e-28 129.0 88 65.9
A05p03830 Brassica napus HOM05D007394 ORTHO05D009996 5.2e-28 127.5 86 62.8
C04p04590 Brassica napus HOM05D007394 ORTHO05D009996 5.2e-28 127.5 85 62.4
BraA05t19373Z Brassica rapa HOM05D007394 ORTHO05D009996 5.2e-28 127.5 85 62.4
A03p24300 Brassica napus HOM05D007394 ORTHO05D009996 7.5e-27 123.6 89 62.9
BraA03t11638Z Brassica rapa HOM05D007394 ORTHO05D009996 7.5e-27 123.6 89 62.9
BraA03t11640Z Brassica rapa HOM05D007394 ORTHO05D009996 7.5e-27 123.6 89 62.9
BcaB06g29322 Brassica carinata HOM05D007394 ORTHO05D009996 9.9e-27 123.2 65 75.4
BcaC02g07172 Brassica carinata HOM05D007394 ORTHO05D009996 2.2e-26 122.1 67 74.6
BcaB06g29321 Brassica carinata HOM05D007394 ORTHO05D009996 2.9e-26 121.7 65 73.8
A05p03840 Brassica napus HOM05D007394 ORTHO05D009996 3.7e-26 121.3 90 64.4
Carub.0004s2598 Capsella rubella HOM05D007394 ORTHO05D009996 3.7e-26 121.3 90 62.2
Aa31LG1G25280 Aethionema arabicum HOM05D007459 ORTHO05D009234 6.4e-26 120.6 84 64.3
A03p24290 Brassica napus HOM05D007394 ORTHO05D009996 8.3e-26 120.2 88 56.8
BraA03t11637Z Brassica rapa HOM05D007394 ORTHO05D009996 8.3e-26 120.2 88 56.8
BraA03t11639Z Brassica rapa HOM05D007394 ORTHO05D009996 8.3e-26 120.2 88 56.8
CARHR138630 Cardamine hirsuta HOM05D007394 ORTHO05D009996 8.3e-26 120.2 85 64.7
A04p32810 Brassica napus HOM05D007394 ORTHO05D009996 1.1e-25 119.8 87 66.7
BraA04t18743Z Brassica rapa HOM05D007394 ORTHO05D009996 1.1e-25 119.8 87 66.7
AT2G43520 Arabidopsis thaliana HOM05D007394 ORTHO05D009996 1.9e-25 119.0 90 61.1
BcaB01g03378 Brassica carinata HOM05D007394 ORTHO05D009996 1.9e-25 119.0 79 65.8
A04p32790 Brassica napus HOM05D007394 ORTHO05D009996 1.9e-25 119.0 84 61.9
BraA05t19371Z Brassica rapa HOM05D007394 ORTHO05D009996 1.9e-25 119.0 90 63.3
THA.LOC109116252 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 1.9e-25 119.0 82 65.9
AT2G43535 Arabidopsis thaliana HOM05D007394 ORTHO05D009996 2.4e-25 118.6 66 68.2
BcaC02g12382 Brassica carinata HOM05D007394 ORTHO05D009996 2.4e-25 118.6 85 62.4
C04p04550 Brassica napus HOM05D007394 ORTHO05D009996 2.4e-25 118.6 85 62.4
BcaC01g05230 Brassica carinata HOM05D007394 ORTHO05D009996 3.2e-25 118.2 89 61.8
C04p70530 Brassica napus HOM05D007394 ORTHO05D009996 4.1e-25 117.9 87 65.5
Carub.0004s2602 Capsella rubella HOM05D007394 ORTHO05D009996 4.1e-25 117.9 86 59.3
AL4G42320 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 5.4e-25 117.5 95 58.9
BcaB02g08928 Brassica carinata HOM05D007394 ORTHO05D009996 5.4e-25 117.5 90 62.2
AL1G53780 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 7.1e-25 117.1 90 58.9
AT1G47540 Arabidopsis thaliana HOM05D007394 ORTHO05D009996 9.2e-25 116.7 90 58.9
BolC4t28552H Brassica oleracea HOM05D007394 ORTHO05D009996 9.2e-25 116.7 87 65.5
AL8G26520 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 1.2e-24 116.3 85 61.2
Aa31LG1G25260 Aethionema arabicum HOM05D007394 ORTHO05D009996 1.6e-24 115.9 87 60.9
Thhalv10001697m.g Eutrema salsugineum HOM05D007394 ORTHO05D009996 2.7e-24 115.2 89 61.8
Carub.0004s2599 Capsella rubella HOM05D007394 ORTHO05D009996 3.5e-24 114.8 88 56.8
BcaB06g29320 Brassica carinata HOM05D007394 ORTHO05D009996 6.0e-24 114.0 88 60.2
AL4G42310 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 1.0e-23 113.2 90 58.9
Sp3g24100 Schrenkiella parvula HOM05D007394 ORTHO05D009996 1.0e-23 113.2 87 58.6
BcaB06g29323 Brassica carinata HOM05D007394 ORTHO05D009996 2.3e-23 112.1 71 60.6
BcaC02g07171 Brassica carinata HOM05D007394 ORTHO05D009996 2.3e-23 112.1 92 62.0
BcaC02g12381 Brassica carinata HOM05D007394 ORTHO05D009996 3.0e-23 111.7 91 60.4
THA.LOC104798701 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 6.6e-23 110.5 88 61.4
Sp3g24200 Schrenkiella parvula HOM05D007394 ORTHO05D009996 2.5e-22 108.6 90 60.0
Carub.0002s0551 Capsella rubella HOM05D007394 ORTHO05D009996 9.5e-22 106.7 88 53.4
Aa31LG1G24860 Aethionema arabicum HOM05D007394 ORTHO05D009996 1.2e-21 106.3 65 64.6
BcaB02g08930 Brassica carinata HOM05D007394 ORTHO05D009996 2.8e-21 105.1 84 59.5
THA.LOC104805814 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 3.6e-21 104.8 85 54.1
BcaC02g07168 Brassica carinata HOM05D007459 ORTHO05D009234 4.7e-21 104.4 69 69.6
CARHR138640 Cardamine hirsuta HOM05D007394 ORTHO05D009996 6.8e-20 100.5 91 50.5
BolC3t15251H Brassica oleracea HOM05D007394 ORTHO05D009996 2.9e-18 95.1 100 52.0
AT2G43550 Arabidopsis thaliana HOM05D007394 ORTHO05D015383 1.1e-17 93.2 85 52.9
AL4G42350 Arabidopsis lyrata HOM05D007394 ORTHO05D015383 4.2e-17 91.3 84 53.6
Thhalv10001696m.g Eutrema salsugineum HOM05D007394 ORTHO05D015383 7.1e-17 90.5 89 50.6
Carub.0004s2603 Capsella rubella HOM05D007394 ORTHO05D015383 1.2e-16 89.7 83 50.6
CARHR138650 Cardamine hirsuta HOM05D007394 ORTHO05D009996 2.1e-16 89.0 83 47.0
CARHR138680 Cardamine hirsuta HOM05D007394 ORTHO05D015383 1.7e-15 85.9 84 52.4
THA.LOC104803915 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 1.7e-15 85.9 84 48.8
Sp4g25660 Schrenkiella parvula HOM05D007394 ORTHO05D015383 3.0e-15 85.1 81 51.9
C04p70540 Brassica napus HOM05D007394 ORTHO05D015383 5.1e-15 84.3 85 54.1
AT2G43530 Arabidopsis thaliana HOM05D007394 ORTHO05D009996 6.6e-15 84.0 88 47.7
BcaB06g29326 Brassica carinata HOM05D007394 ORTHO05D015383 6.6e-15 84.0 85 51.8
BcaC02g07166 Brassica carinata HOM05D007394 ORTHO05D015383 6.6e-15 84.0 85 52.9
BolC4t28555H Brassica oleracea HOM05D007394 ORTHO05D015383 6.6e-15 84.0 85 52.9
A04p32830 Brassica napus HOM05D007394 ORTHO05D015383 8.7e-15 83.6 85 51.8
BraA04t18745Z Brassica rapa HOM05D007394 ORTHO05D015383 8.7e-15 83.6 85 51.8
THA.LOC104803922 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 1.1e-14 83.2 84 47.6
Thhalv10001701m.g Eutrema salsugineum HOM05D007394 ORTHO05D032247 2.1e-13 79.0 83 51.8
Sp4g02290 Schrenkiella parvula HOM05D007394 ORTHO05D009234 3.1e-12 75.1 89 43.8
BcaB06g29325 Brassica carinata HOM05D007394 ORTHO05D032247 2.6e-11 72.0 81 44.4
Carub.0004s2604 Capsella rubella HOM05D007394 ORTHO05D009996 1.7e-10 69.3 91 39.6
BcaC02g07167 Brassica carinata HOM05D007394 ORTHO05D032247 2.2e-10 68.9 81 43.2
A04p32770 Brassica napus HOM05D007394 ORTHO05D033140 1.4e-09 66.2 90 45.6
BraA04t18740Z Brassica rapa HOM05D007394 ORTHO05D033140 1.4e-09 66.2 90 45.6
C04p70470 Brassica napus HOM05D007394 ORTHO05D009234 1.9e-09 65.9 89 44.9
Carub.0004s2601 Capsella rubella HOM05D007394 ORTHO05D009996 3.2e-09 65.1 66 40.9
A04p32760 Brassica napus HOM05D007394 ORTHO05D009234 4.2e-09 64.7 89 43.8
CARHR123510 Cardamine hirsuta HOM05D014590 ORTHO05D017585 5.4e-09 64.3 93 43.0
BolC4t28551H Brassica oleracea HOM05D007394 ORTHO05D033140 1.2e-08 63.2 89 40.4


User provided reference genes

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