Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G41990 Arabidopsis lyrata HOM05D007749 ORTHO05D009809 1.4e-69 266.2 134 100.0
AT2G43310 Arabidopsis thaliana HOM05D007749 ORTHO05D009809 1.8e-64 249.2 134 91.8
CARHR138400 Cardamine hirsuta HOM05D007749 ORTHO05D009809 2.8e-62 241.9 134 90.3
Sp4g25410 Schrenkiella parvula HOM05D007749 ORTHO05D009809 5.9e-60 234.2 134 87.3
BcaC02g07190 Brassica carinata HOM05D007749 ORTHO05D009809 2.2e-59 232.3 134 86.6
BraA04t18728Z Brassica rapa HOM05D007749 ORTHO05D009809 2.2e-59 232.3 134 86.6
Thhalv10001764m.g Eutrema salsugineum HOM05D007749 ORTHO05D009809 2.2e-59 232.3 134 88.1
C04p70340 Brassica napus HOM05D007749 ORTHO05D009809 6.5e-59 230.7 134 85.8
BolC4t28537H Brassica oleracea HOM05D007749 ORTHO05D009809 6.5e-59 230.7 134 85.8
A04p32650 Brassica napus HOM05D007749 ORTHO05D009809 8.5e-59 230.3 134 85.8
Carub.0004s2577 Capsella rubella HOM05D007749 ORTHO05D009809 8.5e-59 230.3 135 87.4
BcaB06g29301 Brassica carinata HOM05D007749 ORTHO05D009809 2.5e-58 228.8 134 85.1
Aa31LG1G25110 Aethionema arabicum HOM05D007749 ORTHO05D009809 5.7e-55 217.6 134 82.8
THA.LOC104803661 Tarenaya hassleriana HOM05D007749 ORTHO05D009809 8.0e-49 197.2 126 76.2
BcaB06g29300 Brassica carinata HOM05D007749 ORTHO05D009809 2.4e-45 185.7 100 90.0
Sed0008576 Sechium edule HOM05D007749 ORTHO05D009809 5.2e-40 167.9 119 68.1
MD04G1040200 Malus domestica HOM05D007749 ORTHO05D009809 1.2e-39 166.8 116 69.8
Manes.11G120200 Manihot esculenta HOM05D007749 ORTHO05D009809 1.5e-39 166.4 126 62.7
Gohir.A10G136900 Gossypium hirsutum HOM05D007749 ORTHO05D009809 2.6e-39 165.6 126 61.1
Gorai.011G143100 Gossypium raimondii HOM05D007749 ORTHO05D009809 3.4e-39 165.2 126 61.1
Gohir.D10G129800 Gossypium hirsutum HOM05D007749 ORTHO05D009809 4.4e-39 164.9 126 61.1
ClCG08G004660 Citrullus lanatus HOM05D007749 ORTHO05D009809 7.5e-39 164.1 118 67.8
CsaV3_6G003910 Cucumis sativus L. HOM05D007749 ORTHO05D009809 7.5e-39 164.1 118 67.8
Thecc.04G180100 Theobroma cacao HOM05D007749 ORTHO05D009809 2.9e-38 162.2 126 61.1
COL.COLO4_07660 Corchorus olitorius HOM05D007749 ORTHO05D009809 3.7e-38 161.8 121 63.6
GSVIVG01010752001 Vitis vinifera HOM05D007749 ORTHO05D009809 3.7e-38 161.8 114 70.2
MELO3C011656.2 Cucumis melo HOM05D007749 ORTHO05D009809 4.9e-38 161.4 118 67.8
CANSAT56G0324 Cannabis sativa HOM05D007749 ORTHO05D009809 4.1e-37 158.3 127 63.8
CANSAT56G2176 Cannabis sativa HOM05D007749 ORTHO05D009809 4.1e-37 158.3 127 63.8
AUR62005121 Chenopodium quinoa HOM05D007749 ORTHO05D009809 2.7e-36 155.6 115 63.5
AUR62000855 Chenopodium quinoa HOM05D007749 ORTHO05D009809 4.6e-36 154.8 115 63.5
PGR142G0736 Punica granatum HOM05D007749 ORTHO05D009809 5.9e-36 154.5 127 60.6
TAR633G0982 Trochodendron aralioides HOM05D007749 ORTHO05D009809 5.9e-36 154.5 119 63.0
Duzib151G1147 Durio zibethinus HOM05D007749 ORTHO05D009809 7.8e-36 154.1 125 59.2
CDE04G2919 Ceratophyllum demersum HOM05D007749 ORTHO05D009809 1.7e-35 152.9 116 64.7
TWI15G0305 Tripterygium wilfordii HOM05D007749 ORTHO05D009809 1.7e-35 152.9 130 59.2
TWI15G0741 Tripterygium wilfordii HOM05D007749 ORTHO05D009809 1.7e-35 152.9 130 59.2
Dinv44193 Davidia involucrata HOM05D006659 ORTHO05D008372 2.3e-35 152.5 122 61.5
Lj3g0008958 Lotus japonicus HOM05D007749 ORTHO05D009809 2.3e-35 152.5 120 61.7
Eucgr.H00373 Eucalyptus grandis HOM05D007749 ORTHO05D009809 2.9e-35 152.1 122 63.9
CDE07G1555 Ceratophyllum demersum HOM05D007749 ORTHO05D009809 3.9e-35 151.8 116 64.7
Sabra07G0104500 Salix brachista HOM05D007749 ORTHO05D009809 3.9e-35 151.8 122 63.1
Atru.chr3.1496 Acer truncatum HOM05D007749 ORTHO05D009809 6.6e-35 151.0 126 60.3
Oeu037445.1 Olea europaea HOM05D007749 ORTHO05D009809 1.9e-34 149.4 123 58.5
Psat1g007040 Pisum sativum HOM05D007749 ORTHO05D009809 2.5e-34 149.1 118 61.9
QL10p048728 Quercus lobata HOM05D007749 ORTHO05D009809 2.5e-34 149.1 119 62.2
Medtr2g098870 Medicago truncatula HOM05D007749 ORTHO05D009809 9.5e-34 147.1 119 61.3
Glyma.13G344000 Glycine max HOM05D007749 ORTHO05D009809 3.6e-33 145.2 116 61.2
Lsat_1_v5_gn_5_23460 Lactuca sativa HOM05D007749 ORTHO05D009809 4.7e-33 144.8 124 56.5
Lalb_Chr14g0372461 Lupinus albus HOM05D007749 ORTHO05D009809 4.7e-33 144.8 122 59.8
Potri.017G030200 Populus trichocarpa HOM05D007749 ORTHO05D009809 8.0e-33 144.1 124 62.1
Potri.007G128100 Populus trichocarpa HOM05D007749 ORTHO05D009809 8.9e-32 140.6 122 60.7
Rhsim09G0028100 Rhododendron simsii HOM05D007749 ORTHO05D009809 8.9e-32 140.6 115 60.0
CiPaw.02G055000 Carya illinoinensis HOM05D007749 ORTHO05D009809 1.2e-31 140.2 120 58.3
Migut.B01511 Erythranthe guttata HOM05D007749 ORTHO05D009809 1.5e-31 139.8 120 57.5
Phvul.005G152700 Phaseolus vulgaris HOM05D007749 ORTHO05D009809 2.0e-31 139.4 121 61.2
PGSC0003DMG400020513 Solanum tuberosum HOM05D007749 ORTHO05D009809 2.6e-31 139.0 115 60.0
VMungo1080G1081 Vigna mungo HOM05D007749 ORTHO05D009809 5.8e-31 137.9 121 59.5
ECA246G4014 Erigeron canadensis HOM05D007749 ORTHO05D009809 1.7e-30 136.3 119 55.5
Sopen08g003040 Solanum pennellii HOM05D007749 ORTHO05D009809 2.9e-30 135.6 115 58.3
MD07G1093600 Malus domestica HOM05D007749 ORTHO05D009809 6.4e-30 134.4 100 66.0
SalBow7G2644 Salvia bowleyana HOM05D007749 ORTHO05D009809 1.1e-29 133.7 119 57.1
FvH4_4g10741 Fragaria vesca HOM05D007749 ORTHO05D009809 1.4e-29 133.3 116 60.3
Nitab4.5_0005487g0020 Nicotiana tabacum HOM05D002689 ORTHO05D003129 1.4e-29 133.3 115 58.3
CAN.G845.29 Capsicum annuum HOM05D007749 ORTHO05D009809 3.2e-29 132.1 120 57.5
MD07G1010900 Malus domestica HOM05D007749 ORTHO05D009809 3.2e-29 132.1 107 62.6
SGA_v2.0_scaffold52G19242 Striga asiatica HOM05D007749 ORTHO05D009809 4.1e-29 131.7 118 56.8
HanXRQChr02g0051151 Helianthus annuus HOM05D007749 ORTHO05D009809 9.2e-29 130.6 122 53.3
Cc00_g14450 Coffea canephora HOM05D007749 ORTHO05D009809 2.7e-28 129.0 124 51.6
unitig_61.g26426 Utricularia gibba HOM05D007749 ORTHO05D009809 3.5e-28 128.6 115 53.0
DCAR_008501 Daucus carota HOM05D007749 ORTHO05D009809 4.6e-28 128.3 122 51.6
Prupe.1G192700 Prunus persica HOM05D007749 ORTHO05D009809 6.0e-28 127.9 104 62.5
Aqoxy7G01786 Aquilegia oxysepala HOM05D007749 ORTHO05D009809 2.3e-27 125.9 116 53.4
Ciclev10022681m.g Citrus clementina HOM05D007749 ORTHO05D009809 2.3e-27 125.9 118 56.8
Sc25g0002390 Simmondsia chinensis HOM05D007749 ORTHO05D009809 2.3e-27 125.9 93 64.5
Aqoxy7G01782 Aquilegia oxysepala HOM05D007749 ORTHO05D009809 3.9e-27 125.2 116 53.4
HPP92_012796 Vanilla planifolia HOM05D007749 ORTHO05D009809 4.3e-26 121.7 120 53.3
Glyma.15G030300 Glycine max HOM05D007749 ORTHO05D009809 1.8e-24 116.3 105 56.2
Ca_01260_v3 Cicer arietinum L. HOM05D007749 ORTHO05D009809 1.2e-23 113.6 92 59.8
ATR0824G043 Amborella trichopoda HOM05D007749 ORTHO05D009809 3.4e-23 112.1 110 48.2
Prupe.1G193800 Prunus persica HOM05D007749 ORTHO05D009809 3.7e-22 108.6 89 58.4
Sc04g0006060 Simmondsia chinensis HOM05D007749 ORTHO05D009809 3.7e-22 108.6 95 56.8
PGSC0003DMG400020496 Solanum tuberosum HOM05D007749 ORTHO05D009809 1.9e-21 106.3 89 57.3
QL02p093050 Quercus lobata HOM05D000759 ORTHO05D000574 2.7e-20 102.4 100 52.0
Actinidia34603 Actinidia chinensis HOM05D007749 ORTHO05D009809 6.6e-19 97.8 134 44.0
Actinidia35976 Actinidia chinensis HOM05D007749 ORTHO05D009809 1.1e-18 97.1 122 46.7
Nitab4.5_0010461g0010 Nicotiana tabacum HOM05D002689 ORTHO05D003129 2.3e-16 89.4 77 55.8
QL04p015298 Quercus lobata HOM05D007749 ORTHO05D009809 4.0e-16 88.6 89 50.6
HPP92_012728 Vanilla planifolia HOM05D007749 ORTHO05D009809 4.4e-15 85.1 122 45.9
SEGI_37948 Sequoiadendron giganteum HOM05D007749 ORTHO05D009809 1.9e-13 79.7 113 36.3
MD08G1180100 Malus domestica HOM05D007749 ORTHO05D009809 5.6e-10 68.2 56 62.5
vmacro02359 Vaccinium macrocarpon HOM05D007749 ORTHO05D009809 3.4e-07 58.9 50 50.0


User provided reference genes

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