Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 0.0e+00 1134.8 626 100.0
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 0.0e+00 1095.9 626 93.9
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 1.6e-288 995.7 629 84.1
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 6.0e-280 967.2 630 82.7
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 3.1e-276 954.9 631 82.3
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 1.3e-263 912.9 627 80.1
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 4.3e-254 881.3 631 76.5
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 1.6e-253 879.4 632 76.7
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 2.8e-253 878.6 633 76.8
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 3.6e-253 878.2 633 76.6
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 4.8e-253 877.9 633 76.6
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 9.6e-246 853.6 591 79.2
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 1.6e-240 836.3 634 72.4
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 8.0e-184 647.9 630 64.4
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 1.8e-183 646.7 631 56.4
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 1.8e-183 646.7 627 58.5
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 1.5e-182 643.7 631 58.5
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 4.9e-181 638.6 632 57.8
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 4.9e-181 638.6 633 56.4
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 6.3e-181 638.3 623 58.1
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 1.8e-180 636.7 631 55.6
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 5.4e-180 635.2 625 58.2
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 5.4e-180 635.2 636 55.0
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 2.0e-179 633.3 625 58.9
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 2.0e-179 633.3 633 56.9
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 2.7e-179 632.9 633 56.9
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 1.5e-177 627.1 624 57.5
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 3.3e-177 625.9 631 56.4
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 3.3e-177 625.9 631 56.4
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 1.8e-175 620.2 635 56.7
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 8.9e-175 617.8 644 54.5
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 9.8e-174 614.4 633 55.6
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 1.3e-173 614.0 643 55.5
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 1.4e-172 610.5 626 55.9
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 1.8e-172 610.1 632 55.7
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 2.4e-172 609.8 632 54.7
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 5.4e-172 608.6 627 56.0
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 1.2e-171 607.4 617 56.1
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.0e-171 606.7 644 53.6
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.0e-171 606.7 644 53.6
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 3.5e-171 605.9 632 55.4
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 4.6e-171 605.5 644 53.6
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 4.6e-171 605.5 626 55.8
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 5.9e-171 605.1 644 53.3
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 5.9e-171 605.1 644 53.3
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 1.0e-170 604.4 644 53.3
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.0e-170 602.8 644 53.3
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 3.9e-170 602.4 634 54.9
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.6e-168 597.0 632 54.4
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.6e-168 595.9 644 53.0
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 4.7e-168 595.5 626 54.3
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 6.2e-168 595.1 636 53.9
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 2.0e-166 590.1 630 55.6
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 3.4e-166 589.3 625 53.0
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 1.7e-165 587.0 629 53.3
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 8.3e-165 584.7 595 57.1
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 3.2e-164 582.8 635 52.9
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 6.0e-163 578.6 645 52.7
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 7.8e-163 578.2 653 52.7
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 2.3e-162 576.6 648 52.8
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 2.8e-160 569.7 643 51.9
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 2.9e-157 559.7 628 51.3
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 2.9e-157 559.7 629 52.0
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 8.3e-157 558.1 652 51.2
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 9.2e-156 554.7 628 51.6
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 9.2e-156 554.7 633 52.4
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 7.8e-155 551.6 633 50.6
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 2.5e-153 546.6 652 50.3
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 5.6e-153 545.4 632 50.5
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 3.1e-151 539.7 622 51.8
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 6.8e-151 538.5 657 50.8
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 2.0e-150 537.0 653 49.3
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 2.6e-150 536.6 626 55.0
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 9.9e-150 534.6 629 49.4
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 9.9e-150 534.6 630 50.2
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 1.3e-149 534.3 636 49.4
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 8.4e-149 531.6 643 49.5
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 8.4e-149 531.6 627 49.3
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 3.2e-148 529.6 631 49.6
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 3.5e-147 526.2 650 48.0
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 1.1e-145 521.2 632 49.7
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 3.3e-145 519.6 639 48.2
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 9.6e-145 518.1 623 54.4
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 6.2e-144 515.4 636 48.0
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 3.4e-142 509.6 636 50.3
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 4.4e-142 509.2 622 54.2
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 9.9e-142 508.1 622 53.9
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 1.7e-141 507.3 622 54.2
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 1.7e-141 507.3 641 48.2
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 2.1e-139 500.4 635 49.0
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 2.7e-139 500.0 555 53.2
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 5.3e-135 485.7 629 45.0
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 6.9e-135 485.3 622 45.7
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 4.5e-134 482.6 617 46.7
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 9.9e-134 481.5 658 45.0
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 3.8e-133 479.6 611 51.4
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 2.4e-132 476.9 646 46.1
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 4.2e-132 476.1 614 47.2
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 1.2e-131 474.6 565 49.9
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 6.0e-131 472.2 625 50.1
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 2.3e-130 470.3 629 49.8
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 3.9e-130 469.5 642 46.1
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 6.7e-130 468.8 655 44.1
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 7.4e-129 465.3 612 46.2
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 1.9e-124 450.7 588 48.3
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 5.5e-124 449.1 647 44.5
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 5.6e-121 439.1 614 44.6
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 2.8e-120 436.8 641 44.3
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 1.2e-118 431.4 665 40.6
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.6e-115 421.0 467 54.8
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 1.3e-114 417.9 656 39.8
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.8e-114 417.5 467 54.8
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 3.1e-111 406.8 428 55.8
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 4.1e-111 406.4 624 41.3
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 1.2e-110 404.8 672 39.4
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 2.0e-110 404.1 422 55.5
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 3.8e-109 399.8 624 41.0
Nn5g27952 Nelumbo nucifera HOM05D001997 ORTHO05D004620 7.4e-105 385.6 492 46.1
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 1.1e-103 381.7 594 47.6
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 3.9e-98 363.2 629 40.1
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 8.8e-98 362.1 408 51.7
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 1.2e-94 351.7 346 59.2
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 4.7e-91 339.7 336 55.7
MD01G1056400 Malus domestica HOM05D001997 ORTHO05D004620 1.4e-87 328.2 398 49.7
BraA06t24958Z Brassica rapa HOM05D001997 ORTHO05D004620 4.1e-79 300.1 534 42.3
RcHm_v2.0_Chr1g0373181 Rosa chinensis HOM05D001997 ORTHO05D004620 1.7e-72 278.1 611 34.9
GSVIVG01013581001 Vitis vinifera HOM05D001997 ORTHO05D004620 6.3e-72 276.2 393 42.7
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 5.4e-71 273.1 197 79.2
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 2.9e-69 267.3 646 30.8
FvH4_7g26521 Fragaria vesca HOM05D001997 ORTHO05D004620 1.5e-68 265.0 610 34.3
FAN06G2538 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.2e-64 251.1 602 33.6
FAN03G0465 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.0e-61 242.3 602 32.7
FAN10G3679 Fragaria x ananassa HOM05D001997 ORTHO05D004620 8.0e-59 232.6 409 37.4
BcaB06g29294 Brassica carinata HOM05D001997 ORTHO05D004620 2.4e-55 221.1 158 77.8
FAN01G2316 Fragaria x ananassa HOM05D001997 ORTHO05D004620 7.5e-49 199.5 409 35.2
BcaC07g39374 Brassica carinata HOM05D001997 ORTHO05D004620 3.7e-48 197.2 152 67.1
BolC4t28530H Brassica oleracea HOM05D001997 ORTHO05D004620 2.0e-46 191.4 136 75.0
Actinidia28986 Actinidia chinensis HOM05D001997 ORTHO05D004620 2.5e-44 184.5 241 47.3
Pp3c13_12610 Physcomitrium patens HOM05D001997 ORTHO05D004620 2.3e-42 177.9 666 27.3
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 2.1e-38 164.9 172 54.1
C04p70260 Brassica napus HOM05D001997 ORTHO05D004620 3.5e-38 164.1 224 48.7
C04p70240 Brassica napus HOM05D001997 ORTHO05D004620 7.8e-38 162.9 102 83.3
BcaB01g03399 Brassica carinata HOM05D001997 ORTHO05D004620 1.3e-37 162.2 317 41.0
A04p32560 Brassica napus HOM05D001997 ORTHO05D004620 3.0e-37 161.0 224 48.2
BraA04t18720Z Brassica rapa HOM05D001997 ORTHO05D004620 3.0e-37 161.0 224 48.2
TPR.G11744 Trifolium pratense HOM05D001997 ORTHO05D004620 4.3e-36 157.1 298 38.9
CAN.G138.1 Capsicum annuum HOM05D001997 ORTHO05D004620 5.6e-36 156.8 116 69.8
BcaC02g07196 Brassica carinata HOM05D001997 ORTHO05D004620 4.4e-33 147.1 87 86.2
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 4.4e-33 147.1 117 64.1
Lsat_1_v5_gn_5_125441 Lactuca sativa HOM05D001997 ORTHO05D004620 2.9e-32 144.4 124 63.7
BcaB06g29295 Brassica carinata HOM05D001997 ORTHO05D004620 3.2e-31 141.0 87 83.9
BolC4t28528H Brassica oleracea HOM05D001997 ORTHO05D004620 1.3e-29 135.6 105 73.3
SHI06486 Sapria himalayana HOM05D002588 ORTHO05D002979 2.5e-28 131.3 114 63.2
CAN.G1014.21 Capsicum annuum HOM05D001997 ORTHO05D004620 4.9e-24 117.1 94 64.9
AagrBONN_evm.TU.Sc2ySwM_228.3298 Anthoceros agrestis HOM05D001997 ORTHO05D004620 4.2e-23 114.0 198 38.9
CAN.G765.4 Capsicum annuum HOM05D001997 ORTHO05D004620 6.0e-22 110.2 94 60.6
MD01G1056500 Malus domestica HOM05D001997 ORTHO05D004620 1.1e-20 105.9 87 63.2
SalBow3G4162 Salvia bowleyana HOM05D001997 ORTHO05D004620 4.8e-19 100.5 100 54.0
Dinv44213 Davidia involucrata HOM05D001997 ORTHO05D004620 2.4e-18 98.2 71 67.6
SMO356G0473 Selaginella moellendorffii HOM05D001997 ORTHO05D004620 9.0e-18 96.3 468 23.7
C03p28740 Brassica napus HOM05D001997 ORTHO05D004620 1.7e-16 92.0 61 77.0
SGA_v2.0_scaffold4G02500 Striga asiatica HOM05D001997 ORTHO05D004620 1.7e-16 92.0 72 59.7
Actinidia11446 Actinidia chinensis HOM05D001997 ORTHO05D004620 2.2e-16 91.7 180 36.7
BcaNung06616 Brassica carinata HOM05D001997 ORTHO05D004620 2.9e-16 91.3 96 53.1
SalBow3G4229 Salvia bowleyana HOM05D001997 ORTHO05D004620 9.3e-15 86.3 112 46.4
BcaC01g05247 Brassica carinata HOM05D001997 ORTHO05D004620 1.2e-14 85.9 71 67.6
BcaC05g28816 Brassica carinata HOM05D001997 ORTHO05D004620 6.0e-14 83.6 82 62.2
Medtr4g076610 Medicago truncatula HOM05D001997 ORTHO05D004620 2.3e-13 81.6 85 50.6
BcaB01g03396 Brassica carinata HOM05D001623 ORTHO05D001473 9.6e-12 76.3 48 79.2
BcaC01g05246 Brassica carinata HOM05D001997 ORTHO05D004620 6.2e-11 73.6 86 51.2
TPR.G290 Trifolium pratense HOM05D001997 ORTHO05D004620 7.6e-09 66.6 51 64.7


User provided reference genes

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