Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G41890 Arabidopsis lyrata HOM05D006262 ORTHO05D007266 6.3e-228 793.9 438 100.0
AT2G43235 Arabidopsis thaliana HOM05D006262 ORTHO05D007266 2.4e-219 765.4 438 92.0
Carub.0004s2570 Capsella rubella HOM05D006262 ORTHO05D007266 7.3e-208 727.2 438 91.1
CARHR138310 Cardamine hirsuta HOM05D006262 ORTHO05D007266 1.3e-196 689.9 439 85.2
Sp4g25360 Schrenkiella parvula HOM05D006262 ORTHO05D007266 7.5e-189 664.1 436 81.4
Thhalv10001453m.g Eutrema salsugineum HOM05D006262 ORTHO05D007266 9.9e-189 663.7 441 81.6
Aa31LG1G25040 Aethionema arabicum HOM05D006262 ORTHO05D007266 7.8e-186 654.1 451 78.5
BcaB01g03403 Brassica carinata HOM05D006262 ORTHO05D007266 5.6e-176 621.3 429 77.9
C03p28720 Brassica napus HOM05D006262 ORTHO05D007266 5.6e-176 621.3 436 78.0
BcaC01g05249 Brassica carinata HOM05D006262 ORTHO05D007266 7.3e-176 620.9 436 77.8
BolC3t15234H Brassica oleracea HOM05D006262 ORTHO05D007266 7.3e-176 620.9 436 77.8
BraA03t11623Z Brassica rapa HOM05D006262 ORTHO05D007266 7.3e-176 620.9 436 78.0
A03p24130 Brassica napus HOM05D006262 ORTHO05D007266 2.1e-175 619.4 436 77.8
Manes.04G048800 Manihot esculenta HOM05D006262 ORTHO05D007266 1.4e-105 387.5 375 55.7
Ciclev10020134m.g Citrus clementina HOM05D006262 ORTHO05D007266 3.0e-105 386.3 434 55.5
Potri.007G124600 Populus trichocarpa HOM05D006262 ORTHO05D007266 2.8e-103 379.8 446 50.9
Cfa015775 Carpinus fangiana HOM05D006262 ORTHO05D007266 2.9e-100 369.8 370 55.9
TWI63G1082 Tripterygium wilfordii HOM05D006262 ORTHO05D007266 1.2e-98 364.4 435 49.4
Thecc.05G002700 Theobroma cacao HOM05D006262 ORTHO05D007266 2.1e-98 363.6 437 49.7
TAR362G0090 Trochodendron aralioides HOM05D006262 ORTHO05D007266 8.9e-97 358.2 383 51.4
PGR142G3389 Punica granatum HOM05D006262 ORTHO05D007266 3.4e-96 356.3 373 53.9
FvH4_4g11340 Fragaria vesca HOM05D006262 ORTHO05D007266 7.5e-96 355.1 381 53.3
COL.COLO4_14416 Corchorus olitorius HOM05D006262 ORTHO05D007266 9.8e-96 354.8 424 48.1
Atru.chr3.1601 Acer truncatum HOM05D006262 ORTHO05D007266 2.4e-94 350.1 441 48.8
Atru.chr3.1609 Acer truncatum HOM05D006262 ORTHO05D007266 2.4e-94 350.1 441 48.8
Gorai.012G119900 Gossypium raimondii HOM05D006262 ORTHO05D007266 1.2e-93 347.8 440 48.6
Gohir.D04G136100 Gossypium hirsutum HOM05D006262 ORTHO05D007266 2.0e-93 347.1 440 48.6
Duzib093G0344 Durio zibethinus HOM05D006262 ORTHO05D007266 7.8e-93 345.1 451 47.9
Gohir.A04G096300 Gossypium hirsutum HOM05D006262 ORTHO05D007266 1.3e-92 344.4 440 48.4
CANSAT78G0581 Cannabis sativa HOM05D006262 ORTHO05D007266 1.7e-92 344.0 378 53.2
CSS0049911 Camellia sinensis var. sinensis HOM05D006262 ORTHO05D007266 2.3e-92 343.6 382 51.0
DCAR_023918 Daucus carota HOM05D006262 ORTHO05D007266 2.3e-92 343.6 376 50.8
Prupe.1G187900 Prunus persica HOM05D006262 ORTHO05D007266 2.3e-92 343.6 384 53.6
HanXRQChr15g0494811 Helianthus annuus HOM05D006262 ORTHO05D007266 5.0e-92 342.4 447 46.1
Sabra07G0100700 Salix brachista HOM05D006262 ORTHO05D002297 1.5e-91 340.9 448 48.4
RcHm_v2.0_Chr4g0407651 Rosa chinensis HOM05D006262 ORTHO05D007266 2.5e-91 340.1 399 50.6
Glyma.20G245900 Glycine max HOM05D006262 ORTHO05D007266 1.2e-90 337.8 381 51.4
QL10p047365 Quercus lobata HOM05D006262 ORTHO05D007266 6.8e-89 332.0 425 48.2
Dinv22693 Davidia involucrata HOM05D006262 ORTHO05D007266 1.2e-88 331.3 467 43.9
Lalb_Chr02g0144321 Lupinus albus HOM05D006262 ORTHO05D007266 3.4e-88 329.7 378 48.9
MD04G1038000 Malus domestica HOM05D006262 ORTHO05D007266 4.4e-88 329.3 383 52.0
Rhsim09G0030700 Rhododendron simsii HOM05D006262 ORTHO05D007266 4.4e-88 329.3 345 55.4
Lj5g0018354 Lotus japonicus HOM05D006262 ORTHO05D007266 6.4e-87 325.5 363 51.8
Hma1.2p1_0597F.1_g186430 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 3.2e-86 323.2 373 48.5
Phvul.007G004000 Phaseolus vulgaris HOM05D006262 ORTHO05D007266 4.1e-86 322.8 378 48.7
Eucgr.A00253 Eucalyptus grandis HOM05D006262 ORTHO05D007266 2.0e-85 320.5 323 55.7
ECA238G4140 Erigeron canadensis HOM05D000005 ORTHO05D000012 3.5e-85 319.7 361 50.1
vmacro00601 Vaccinium macrocarpon HOM05D006262 ORTHO05D007266 7.8e-85 318.5 413 47.0
Ca_29592_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 2.3e-84 317.0 355 51.8
Sed0004128 Sechium edule HOM05D006262 ORTHO05D007266 2.3e-84 317.0 371 50.1
ClCG07G015820 Citrullus lanatus HOM05D006262 ORTHO05D007266 6.6e-84 315.5 407 46.7
MBI08_g33651_MAGBIO Magnolia biondii HOM05D006262 ORTHO05D007266 6.6e-84 315.5 369 49.1
VMungo0720G2273 Vigna mungo HOM05D006262 ORTHO05D007266 6.6e-84 315.5 396 47.0
CsaV3_4G003530 Cucumis sativus L. HOM05D006262 ORTHO05D007266 3.3e-83 313.2 397 47.6
Lsat_1_v5_gn_2_51881 Lactuca sativa HOM05D006262 ORTHO05D007266 7.3e-83 312.0 364 49.2
PSO675G4698 Papaver somniferum HOM05D006262 ORTHO05D007266 1.6e-82 310.8 370 47.8
Cc03_g13170 Coffea canephora HOM05D006262 ORTHO05D007266 2.1e-82 310.5 386 47.4
arahy.Tifrunner.gnm1.ann1.6Y9ITK Arachis hypogaea HOM05D006262 ORTHO05D007266 1.4e-81 307.8 344 50.0
arahy.Tifrunner.gnm1.ann1.BL35NN Arachis hypogaea HOM05D006262 ORTHO05D007266 1.4e-81 307.8 336 51.5
MELO3C017699.2 Cucumis melo HOM05D006262 ORTHO05D007266 1.4e-81 307.8 396 46.5
PSO017G4626 Papaver somniferum HOM05D006262 ORTHO05D007266 1.8e-81 307.4 367 46.9
ATR0743G268 Amborella trichopoda HOM05D006262 ORTHO05D007266 5.2e-81 305.8 389 45.2
Medtr1g116540 Medicago truncatula HOM05D006262 ORTHO05D007266 5.8e-80 302.4 393 45.5
Solyc09g098530.4 Solanum lycopersicum HOM05D006262 ORTHO05D007266 1.3e-79 301.2 383 46.2
Aqoxy2G04115 Aquilegia oxysepala HOM05D006262 ORTHO05D007266 1.7e-79 300.8 403 42.9
Sopen09g036450 Solanum pennellii HOM05D006262 ORTHO05D007266 2.2e-79 300.4 383 46.0
PGSC0003DMG400021613 Solanum tuberosum HOM05D006262 ORTHO05D007266 2.9e-79 300.1 385 45.7
EL10Ac3g06302 Beta vulgaris HOM05D006262 ORTHO05D007266 6.4e-79 298.9 378 47.1
TPR.G10421 Trifolium pratense HOM05D006262 ORTHO05D007266 9.2e-78 295.0 387 47.3
Lj3A232G38 Lonicera japonica HOM05D006262 ORTHO05D007266 1.3e-76 291.2 397 43.1
Nn1g09825 Nelumbo nucifera HOM05D006262 ORTHO05D007266 3.0e-76 290.0 370 44.9
MSTRG.24585 Avicennia marina HOM05D006262 ORTHO05D007266 3.9e-76 289.7 383 44.6
Sc13g0007690 Simmondsia chinensis HOM05D006262 ORTHO05D007266 3.9e-76 289.7 359 47.9
Ah.07g204100 Amaranthus hybridus HOM05D006262 ORTHO05D007266 1.9e-75 287.3 365 45.2
CDE09G0849 Ceratophyllum demersum HOM05D006262 ORTHO05D007266 2.3e-73 280.4 292 53.1
Migut.N03113 Erythranthe guttata HOM05D006262 ORTHO05D007266 8.9e-73 278.5 363 43.8
Haze_00720 Corylus avellana HOM05D006262 ORTHO05D007266 2.0e-72 277.3 471 40.8
GSVIVG01013579001 Vitis vinifera HOM05D006262 ORTHO05D007266 9.9e-72 275.0 221 62.4
SalBow6G1208 Salvia bowleyana HOM05D006262 ORTHO05D007266 4.1e-70 269.6 393 41.0
Hund22599 Selenicereus undatus HOM05D006262 ORTHO05D007266 2.7e-69 266.9 395 42.3
HPP92_024424 Vanilla planifolia HOM05D006262 ORTHO05D007266 6.0e-69 265.8 371 43.4
Psat6g241480 Pisum sativum HOM05D006262 ORTHO05D007266 5.6e-67 259.2 347 44.7
Os05g0299200 Oryza sativa ssp. japonica HOM05D006262 ORTHO05D007266 5.2e-65 252.7 371 42.9
Zm00001eb350760 Zea mays HOM05D006262 ORTHO05D007266 3.2e-62 243.4 377 40.8
unitig_27.g25149 Utricularia gibba HOM05D006262 ORTHO05D007266 4.2e-62 243.0 370 40.3
Ca_11400_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 8.7e-60 235.3 355 44.5
Ca_11403_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 9.6e-59 231.9 354 44.4
Oeu029569.3 Olea europaea HOM05D006262 ORTHO05D007266 2.9e-55 220.3 447 35.1
AUR62002605 Chenopodium quinoa HOM05D006262 ORTHO05D007266 3.8e-55 219.9 366 40.7
AUR62030023 Chenopodium quinoa HOM05D006262 ORTHO05D007266 1.9e-54 217.6 366 40.7
SEGI_17174 Sequoiadendron giganteum HOM05D006262 ORTHO05D007266 2.1e-53 214.2 395 39.5
CiPaw.01G102600 Carya illinoinensis HOM05D006262 ORTHO05D007266 3.0e-52 210.3 289 45.3
AagrBONN_evm.TU.Sc2ySwM_344.5117 Anthoceros agrestis HOM05D006262 ORTHO05D007266 4.0e-49 199.9 356 39.9
Peaxi162Scf00286g00119 Petunia axillaris HOM05D006262 ORTHO05D007266 6.9e-49 199.1 169 61.5
Nitab4.5_0002908g0080 Nicotiana tabacum HOM05D006262 ORTHO05D007266 7.6e-48 195.7 163 61.3
Nitab4.5_0001049g0110 Nicotiana tabacum HOM05D006262 ORTHO05D007266 2.2e-47 194.1 162 61.7
Mapoly0004s0159 Marchantia polymorpha HOM05D006262 ORTHO05D007266 6.4e-47 192.6 410 34.6
SMO351G0235 Selaginella moellendorffii HOM05D006262 ORTHO05D007266 1.3e-44 184.9 278 43.5
SGA_v2.0_scaffold31G12573 Striga asiatica HOM05D006262 ORTHO05D007266 1.9e-43 181.0 368 34.2
Cpa.g.sc71.28 Carica papaya HOM05D006262 ORTHO05D007266 7.4e-43 179.1 249 42.6
Pp3c12_3930 Physcomitrium patens HOM05D006262 ORTHO05D007266 3.1e-41 173.7 383 33.7
Hma1.2p1_0597F.1_g186420 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 5.1e-36 156.4 122 66.4
Pp3c9_3680 Physcomitrium patens HOM05D006262 ORTHO05D007266 2.0e-32 144.4 357 30.5
Cpa.g.sc71.30 Carica papaya HOM05D006262 ORTHO05D007266 1.2e-29 135.2 86 81.4
BraA10t42873Z Brassica rapa HOM05D006262 ORTHO05D007266 1.3e-28 131.7 252 42.5
Nitab4.5_0002908g0070 Nicotiana tabacum HOM05D006262 ORTHO05D007266 1.5e-27 128.3 199 40.7
Nitab4.5_0001049g0100 Nicotiana tabacum HOM05D006262 ORTHO05D007266 3.3e-27 127.1 199 40.7
Hma1.2p1_0597F.1_g186440 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 1.6e-21 108.2 187 36.4
BcaB03g16875 Brassica carinata HOM05D006262 ORTHO05D007266 7.9e-21 105.9 246 38.2
Peaxi162Scf00286g10017 Petunia axillaris HOM05D006262 ORTHO05D007266 2.3e-20 104.4 280 31.8
FAN17G0796 Fragaria x ananassa HOM05D006262 ORTHO05D007266 2.0e-19 101.3 74 68.9
MCO03G554 Micromonas commoda HOM05D006262 ORTHO05D007266 2.4e-17 94.4 286 30.1
PRCOL_00005486 Prasinoderma coloniale HOM05D006262 ORTHO05D007266 2.4e-17 94.4 311 31.5
QL09p046233 Quercus lobata HOM05D006262 ORTHO05D007266 3.1e-17 94.0 83 63.9
CAN.G688.4 Capsicum annuum HOM05D006262 ORTHO05D007266 5.3e-17 93.2 76 59.2
GSVIVG01020265001 Vitis vinifera HOM05D006262 ORTHO05D007266 1.1e-11 75.5 105 42.9
CAN.G51.2 Capsicum annuum HOM05D006262 ORTHO05D007266 2.0e-11 74.7 76 51.3
FvH4_c17g00080 Fragaria vesca HOM05D006262 ORTHO05D007266 8.2e-10 69.3 49 69.4
FAN07G2249 Fragaria x ananassa HOM05D006262 ORTHO05D007266 1.4e-09 68.6 46 71.7
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 4.1e-09 67.0 73 54.8
BcaC07g41819 Brassica carinata HOM05D003128 ORTHO05D024111 5.3e-09 66.6 70 55.7
FAN07G1916 Fragaria x ananassa HOM05D006262 ORTHO05D007266 2.5e-06 57.8 44 68.2


User provided reference genes

Program Settings