Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G41710 Arabidopsis lyrata HOM05D005211 ORTHO05D006148 5.0e-82 307.8 161 100.0
AT2G43060 Arabidopsis thaliana HOM05D005211 ORTHO05D006148 9.9e-70 266.9 161 88.8
Carub.0004s2554 Capsella rubella HOM05D005211 ORTHO05D006148 6.2e-64 247.7 161 83.2
Sp4g25190 Schrenkiella parvula HOM05D005211 ORTHO05D006148 6.9e-63 244.2 161 79.5
BcaNung03535 Brassica carinata HOM05D005211 ORTHO05D006148 2.6e-62 242.3 163 81.6
CARHR138130 Cardamine hirsuta HOM05D005211 ORTHO05D006148 5.8e-62 241.1 165 78.8
BNapus_Darmor_BZH_scaffold_64p00090 Brassica napus HOM05D005211 ORTHO05D006148 6.0e-59 231.1 162 77.8
BraA04t18707Z Brassica rapa HOM05D005211 ORTHO05D006148 6.0e-59 231.1 162 77.8
Thhalv10017615m.g Eutrema salsugineum HOM05D005211 ORTHO05D006148 1.0e-58 230.3 161 78.9
BcaB06g29284 Brassica carinata HOM05D005211 ORTHO05D006148 1.1e-55 220.3 161 73.9
BcaB06g29285 Brassica carinata HOM05D005211 ORTHO05D006148 1.1e-55 220.3 161 73.9
A05p03550 Brassica napus HOM05D005211 ORTHO05D006148 1.7e-53 213.0 161 73.3
BraA05t19341Z Brassica rapa HOM05D005211 ORTHO05D006148 1.7e-53 213.0 161 73.3
C04p04120 Brassica napus HOM05D005211 ORTHO05D006148 4.2e-52 208.4 161 72.0
BcaC02g12418 Brassica carinata HOM05D005211 ORTHO05D006148 1.6e-51 206.5 161 71.4
BolC4t22051H Brassica oleracea HOM05D005211 ORTHO05D006148 1.6e-51 206.5 161 71.4
C04p70060 Brassica napus HOM05D005211 ORTHO05D006148 8.4e-45 184.1 161 65.2
BolC4t28506H Brassica oleracea HOM05D005211 ORTHO05D006148 8.4e-45 184.1 161 65.2
THA.LOC104802290 Tarenaya hassleriana HOM05D005211 ORTHO05D006148 6.7e-34 147.9 161 59.6
Aa31LG1G24830 Aethionema arabicum HOM05D005211 ORTHO05D006148 8.2e-32 141.0 152 58.6
THA.LOC104803428 Tarenaya hassleriana HOM05D005211 ORTHO05D006148 1.0e-29 134.0 164 53.7
BcaC02g07205 Brassica carinata HOM05D005211 ORTHO05D006148 7.2e-28 127.9 90 75.6
FAN22G0070 Fragaria x ananassa HOM05D005211 ORTHO05D006148 9.7e-17 90.9 145 42.8
FAN07G0144 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.7e-16 90.1 145 40.7
FAN12G3367 Fragaria x ananassa HOM05D005211 ORTHO05D006148 3.7e-16 89.0 145 40.7
FAN12G0052 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.1e-15 87.4 145 40.0
Prupe.1G178500 Prunus persica HOM05D005211 ORTHO05D006148 1.4e-15 87.0 147 41.5
QL10p044103 Quercus lobata HOM05D005211 ORTHO05D006148 3.1e-15 85.9 153 41.2
RcHm_v2.0_Chr4g0409781 Rosa chinensis HOM05D005211 ORTHO05D006148 3.1e-15 85.9 145 43.4
Potri.002G232500 Populus trichocarpa HOM05D005211 ORTHO05D006148 9.1e-15 84.3 148 43.9
PGR083G0764 Punica granatum HOM05D005211 ORTHO05D006148 1.2e-14 84.0 161 36.0
Nn1g08305 Nelumbo nucifera HOM05D005211 ORTHO05D006148 1.5e-14 83.6 151 38.4
Eucgr.H00442 Eucalyptus grandis HOM05D005211 ORTHO05D006148 3.4e-14 82.4 163 38.0
Gorai.001G228500 Gossypium raimondii HOM05D005211 ORTHO05D006148 3.4e-14 82.4 150 40.7
Sabra14G0113200 Salix brachista HOM05D005211 ORTHO05D006148 4.5e-14 82.0 149 41.6
CiPaw.01G108100 Carya illinoinensis HOM05D005211 ORTHO05D006148 5.9e-14 81.6 147 43.5
CiPaw.02G059600 Carya illinoinensis HOM05D005211 ORTHO05D006148 5.9e-14 81.6 147 42.9
Gohir.D07G203100 Gossypium hirsutum HOM05D005211 ORTHO05D006148 5.9e-14 81.6 150 40.7
Gohir.A07G196700 Gossypium hirsutum HOM05D005211 ORTHO05D006148 1.0e-13 80.9 150 40.0
CANSAT78G0009 Cannabis sativa HOM05D005211 ORTHO05D006148 1.7e-13 80.1 172 37.8
Cfa008551 Carpinus fangiana HOM05D005211 ORTHO05D006148 1.7e-13 80.1 161 38.5
Sabra02G0177300 Salix brachista HOM05D005211 ORTHO05D006148 1.7e-13 80.1 150 41.3
Sc17g0001650 Simmondsia chinensis HOM05D005211 ORTHO05D006148 2.9e-13 79.3 147 36.7
C04p70110 Brassica napus HOM05D012854 ORTHO05D006148 3.8e-13 79.0 55 74.5
CDE07G0882 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 3.8e-13 79.0 160 40.0
Manes.11G114000 Manihot esculenta HOM05D005211 ORTHO05D006148 6.5e-13 78.2 146 42.5
Prupe.8G190100 Prunus persica HOM05D005211 ORTHO05D006148 6.5e-13 78.2 142 38.7
PGR142G0694 Punica granatum HOM05D005211 ORTHO05D006148 6.5e-13 78.2 169 35.5
Hma1.2p1_0412F.1_g147140 Hydrangea macrophylla HOM05D005211 ORTHO05D006148 8.5e-13 77.8 110 48.2
Potri.014G149800 Populus trichocarpa HOM05D005211 ORTHO05D006148 1.1e-12 77.4 157 40.1
Manes.13G054600 Manihot esculenta HOM05D005211 ORTHO05D006148 1.4e-12 77.0 157 35.0
CDE04G3135 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 1.9e-12 76.6 152 38.8
Eucgr.H00724 Eucalyptus grandis HOM05D005211 ORTHO05D006148 1.9e-12 76.6 155 40.6
HPP92_023344 Vanilla planifolia HOM05D005211 ORTHO05D006148 2.5e-12 76.3 160 37.5
CANSAT01G0934 Cannabis sativa HOM05D005211 ORTHO05D006148 3.2e-12 75.9 151 36.4
FAN27G2625 Fragaria x ananassa HOM05D005211 ORTHO05D006148 3.2e-12 75.9 154 40.3
RcHm_v2.0_Chr6g0282791 Rosa chinensis HOM05D005211 ORTHO05D006148 3.2e-12 75.9 152 41.4
Duzib138G1875 Durio zibethinus HOM05D005211 ORTHO05D006148 5.5e-12 75.1 152 38.2
FAN22G0040 Fragaria x ananassa HOM05D005211 ORTHO05D006148 5.5e-12 75.1 109 44.0
RcHm_v2.0_Chr6g0282781 Rosa chinensis HOM05D005211 ORTHO05D006148 5.5e-12 75.1 153 35.3
CSS0012153 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 7.2e-12 74.7 143 41.3
CSS0028586 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 7.2e-12 74.7 143 41.3
FAN24G0649 Fragaria x ananassa HOM05D005211 ORTHO05D006148 7.2e-12 74.7 154 40.3
Lj1P101T27 Lonicera japonica HOM05D005211 ORTHO05D006148 7.2e-12 74.7 148 37.8
SGA_v2.0_scaffold77G25295 Striga asiatica HOM05D005211 ORTHO05D006148 7.2e-12 74.7 139 37.4
TAR633G2277 Trochodendron aralioides HOM05D005211 ORTHO05D006148 7.2e-12 74.7 134 41.0
COL.COLO4_26568 Corchorus olitorius HOM05D005211 ORTHO05D006148 9.4e-12 74.3 147 37.4
Duzib133G1390 Durio zibethinus HOM05D005211 ORTHO05D006148 1.2e-11 73.9 157 34.4
QL93p0263_0042 Quercus lobata HOM05D005211 ORTHO05D006148 1.2e-11 73.9 146 41.1
Lsat_1_v5_gn_5_178301 Lactuca sativa HOM05D005211 ORTHO05D006148 2.1e-11 73.2 160 36.9
Oeu057829.1 Olea europaea HOM05D005211 ORTHO05D006148 2.1e-11 73.2 145 37.9
TAR365G0119 Trochodendron aralioides HOM05D005211 ORTHO05D006148 2.1e-11 73.2 144 37.5
TAR636G0814 Trochodendron aralioides HOM05D005211 ORTHO05D006148 2.1e-11 73.2 147 42.9
Duzib211G0461 Durio zibethinus HOM05D005211 ORTHO05D006148 2.7e-11 72.8 164 34.1
Lj2P1117T13 Lonicera japonica HOM05D005211 ORTHO05D006148 2.7e-11 72.8 146 40.4
MD05G1158800 Malus domestica HOM05D005211 ORTHO05D006148 2.7e-11 72.8 120 43.3
Os04g0660100 Oryza sativa ssp. japonica HOM05D005211 ORTHO05D006148 2.7e-11 72.8 170 37.6
TWI36G1602 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 2.7e-11 72.8 139 36.7
EL10Ac5g10623 Beta vulgaris HOM05D005211 ORTHO05D006148 3.6e-11 72.4 151 37.7
Sed0015684 Sechium edule HOM05D005211 ORTHO05D006148 4.7e-11 72.0 159 35.8
Actinidia23357 Actinidia chinensis HOM05D005211 ORTHO05D006148 6.1e-11 71.6 156 37.2
MBI07_g35368_MAGBIO Magnolia biondii HOM05D005211 ORTHO05D006148 6.1e-11 71.6 143 38.5
Aqoxy2G03955 Aquilegia oxysepala HOM05D005211 ORTHO05D006148 8.0e-11 71.2 145 37.9
Gohir.A11G142700 Gossypium hirsutum HOM05D005211 ORTHO05D006148 8.0e-11 71.2 159 35.8
MD10G1151700 Malus domestica HOM05D005211 ORTHO05D006148 1.0e-10 70.9 149 36.9
Oeu003658.1 Olea europaea HOM05D005211 ORTHO05D006148 1.0e-10 70.9 136 36.0
PGSC0003DMG400005560 Solanum tuberosum HOM05D005211 ORTHO05D006148 1.0e-10 70.9 141 40.4
CiPaw.13G055500 Carya illinoinensis HOM05D005211 ORTHO05D006148 1.8e-10 70.1 150 40.0
Cc01_g16110 Coffea canephora HOM05D005211 ORTHO05D006148 1.8e-10 70.1 137 40.1
Migut.N00665 Erythranthe guttata HOM05D005211 ORTHO05D006148 1.8e-10 70.1 160 36.9
FAN15G0641 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.8e-10 70.1 161 35.4
AUR62028696 Chenopodium quinoa HOM05D005211 ORTHO05D006148 2.3e-10 69.7 143 38.5
FAN27G1389 Fragaria x ananassa HOM05D005211 ORTHO05D006148 3.0e-10 69.3 157 34.4
Thecc.01G210700 Theobroma cacao HOM05D005211 ORTHO05D006148 3.0e-10 69.3 147 38.1
Cpa.g.sc8.70 Carica papaya HOM05D005211 ORTHO05D006148 3.9e-10 68.9 157 36.9
Haze_11077 Corylus avellana HOM05D005211 ORTHO05D006148 3.9e-10 68.9 140 42.9
MELO3C026134.2 Cucumis melo HOM05D005211 ORTHO05D006148 5.2e-10 68.6 142 38.0
TWI63G1319 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 5.2e-10 68.6 151 35.1
FvH4_2g17760 Fragaria vesca HOM05D005211 ORTHO05D006148 6.7e-10 68.2 145 40.0
MD05G1158700 Malus domestica HOM05D005211 ORTHO05D006148 2.0e-09 66.6 152 33.6
CiPaw.14G044000 Carya illinoinensis HOM05D005211 ORTHO05D006148 2.6e-09 66.2 152 37.5
ClCG08G003780 Citrullus lanatus HOM05D005211 ORTHO05D006148 4.4e-09 65.5 135 40.7
unitig_0.g414 Utricularia gibba HOM05D005211 ORTHO05D006148 5.7e-09 65.1 133 36.1
Gorai.007G159800 Gossypium raimondii HOM05D005211 ORTHO05D006148 7.4e-09 64.7 160 32.5
CDE02G4090 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 1.3e-08 63.9 143 37.1
QL09p046680 Quercus lobata HOM05D005211 ORTHO05D006148 2.2e-08 63.2 140 38.6
vmacro02818 Vaccinium macrocarpon HOM05D005211 ORTHO05D006148 2.2e-08 63.2 149 41.6
HanXRQChr01g0007251 Helianthus annuus HOM05D005211 ORTHO05D006148 2.8e-08 62.8 149 36.9
Manes.12G059000 Manihot esculenta HOM05D005211 ORTHO05D006148 2.8e-08 62.8 136 36.8
PSO675G5714 Papaver somniferum HOM05D005211 ORTHO05D006148 2.8e-08 62.8 155 34.2
Gohir.D11G149000 Gossypium hirsutum HOM05D005211 ORTHO05D006148 3.7e-08 62.4 160 31.9
FvH4_2g17750 Fragaria vesca HOM05D005211 ORTHO05D006148 6.3e-08 61.6 152 34.2
FAN24G3081 Fragaria x ananassa HOM05D005211 ORTHO05D006148 6.3e-08 61.6 152 34.2
CDE02G1081 Ceratophyllum demersum HOM05D001624 ORTHO05D001530 8.2e-08 61.2 142 30.3
Dinv28809 Davidia involucrata HOM05D005211 ORTHO05D006148 8.2e-08 61.2 131 37.4
TWI18G0981 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 8.2e-08 61.2 148 33.1
unitig_52.g17443 Utricularia gibba HOM05D005211 ORTHO05D006148 8.2e-08 61.2 119 39.5
MD10G1151600 Malus domestica HOM05D005211 ORTHO05D006148 1.1e-07 60.8 163 32.5
Hma1.2p1_0959F.1_g241620 Hydrangea macrophylla HOM05D005211 ORTHO05D006148 2.4e-07 59.7 115 40.9
Zm00001eb432720 Zea mays HOM05D005211 ORTHO05D006148 2.4e-07 59.7 161 33.5
Migut.D00738 Erythranthe guttata HOM05D005211 ORTHO05D006148 3.1e-07 59.3 152 33.6
Prupe.6G311800 Prunus persica HOM05D001624 ORTHO05D001530 3.1e-07 59.3 116 40.5
Rhsim13G0052900 Rhododendron simsii HOM05D005211 ORTHO05D006148 3.1e-07 59.3 123 39.0
Sed0008149 Sechium edule HOM05D001624 ORTHO05D001530 3.1e-07 59.3 147 32.7
DCAR_004769 Daucus carota HOM05D005211 ORTHO05D006148 5.3e-07 58.5 137 34.3
Oeu013415.1 Olea europaea HOM05D005211 ORTHO05D006148 5.3e-07 58.5 144 35.4
THA.LOC104823719 Tarenaya hassleriana HOM05D001624 ORTHO05D001530 7.0e-07 58.2 148 30.4
ATR0686G247 Amborella trichopoda HOM05D005211 ORTHO05D006148 9.1e-07 57.8 151 33.1
Actinidia01677 Actinidia chinensis HOM05D001624 ORTHO05D001530 1.2e-06 57.4 153 33.3
ATR0693G249 Amborella trichopoda HOM05D001624 ORTHO05D001530 1.2e-06 57.4 154 30.5
CDE08G0183 Ceratophyllum demersum HOM05D001624 ORTHO05D001530 1.2e-06 57.4 135 30.4
CsaV3_6G003020 Cucumis sativus L. HOM05D005211 ORTHO05D006148 1.2e-06 57.4 103 41.7
Actinidia30014 Actinidia chinensis HOM05D005211 ORTHO05D006148 1.6e-06 57.0 97 41.2
CiPaw.07G030500 Carya illinoinensis HOM05D001624 ORTHO05D001530 1.6e-06 57.0 148 31.8
FvH4_6g07630 Fragaria vesca HOM05D001624 ORTHO05D001530 1.6e-06 57.0 148 31.8
FAN14G5952 Fragaria x ananassa HOM05D001624 ORTHO05D001530 1.6e-06 57.0 148 31.8
Lalb_Chr13g0300541 Lupinus albus HOM05D004507 ORTHO05D004874 1.6e-06 57.0 169 30.2
AL3G30080 Arabidopsis lyrata HOM05D001624 ORTHO05D001530 2.6e-06 56.2 164 28.7
CARHR092350 Cardamine hirsuta HOM05D001624 ORTHO05D001530 2.6e-06 56.2 165 28.5
CDE09G1368 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 2.6e-06 56.2 140 37.1
Prupe.8G190000 Prunus persica HOM05D005211 ORTHO05D006148 2.6e-06 56.2 137 34.3
SEGI_03314 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 2.6e-06 56.2 176 31.8
Atru.chr6.3543 Acer truncatum HOM05D005211 ORTHO05D006148 3.5e-06 55.8 47 59.6
MELO3C006722.2 Cucumis melo HOM05D001624 ORTHO05D001530 3.5e-06 55.8 151 29.1
CsaV3_3G015270 Cucumis sativus L. HOM05D001624 ORTHO05D001530 3.5e-06 55.8 151 29.1
THA.LOC104820593 Tarenaya hassleriana HOM05D001624 ORTHO05D001530 3.5e-06 55.8 148 30.4
Solyc01g100660.4 Solanum lycopersicum HOM05D001624 ORTHO05D001530 4.5e-06 55.5 146 30.8
TAR636G0825 Trochodendron aralioides HOM05D001624 ORTHO05D001530 4.5e-06 55.5 156 30.8
FAN15G2376 Fragaria x ananassa HOM05D005211 ORTHO05D006148 5.9e-06 55.1 95 42.1
Gohir.D07G167400 Gossypium hirsutum HOM05D005211 ORTHO05D006148 7.7e-06 54.7 94 38.3
RcHm_v2.0_Chr3g0457291 Rosa chinensis HOM05D001624 ORTHO05D001530 7.7e-06 54.7 149 34.9


User provided reference genes

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