Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G41610 Arabidopsis lyrata HOM05D006899 ORTHO05D008566 5.7e-77 291.2 188 100.0
AT2G42975 Arabidopsis thaliana HOM05D006899 ORTHO05D008566 6.1e-71 271.2 189 89.9
CARHR138030 Cardamine hirsuta HOM05D006899 ORTHO05D008566 3.8e-65 251.9 190 83.2
Sp4g25100 Schrenkiella parvula HOM05D006899 ORTHO05D008566 3.6e-63 245.4 191 77.0
Carub.0004s2544 Capsella rubella HOM05D006899 ORTHO05D008566 4.7e-63 245.0 193 82.9
Thhalv10017256m.g Eutrema salsugineum HOM05D006899 ORTHO05D008566 8.0e-63 244.2 201 81.6
BraA04t18701Z Brassica rapa HOM05D006899 ORTHO05D008566 5.7e-61 238.0 190 74.7
Aa31LG1G24750 Aethionema arabicum HOM05D006899 ORTHO05D008566 7.5e-61 237.7 188 72.3
BcaC02g07213 Brassica carinata HOM05D006899 ORTHO05D008566 8.3e-60 234.2 190 76.3
C04p70000 Brassica napus HOM05D006899 ORTHO05D008566 8.3e-60 234.2 190 76.3
BolC4t28500H Brassica oleracea HOM05D006899 ORTHO05D008566 8.3e-60 234.2 190 76.3
BNapus_Darmor_BZH_scaffold_64p00160 Brassica napus HOM05D006899 ORTHO05D008566 1.1e-59 233.8 189 83.1
BcaB06g29274 Brassica carinata HOM05D006899 ORTHO05D008566 2.3e-57 226.1 194 80.4
CiPaw.04G138700 Carya illinoinensis HOM05D006899 ORTHO05D008566 1.2e-45 187.2 196 59.2
THA.LOC104802283 Tarenaya hassleriana HOM05D006899 ORTHO05D008566 2.0e-45 186.4 194 65.5
Rhsim04G0081600 Rhododendron simsii HOM05D006899 ORTHO05D008566 5.8e-45 184.9 196 60.7
vmacro09192 Vaccinium macrocarpon HOM05D006899 ORTHO05D008566 1.7e-44 183.3 195 60.5
Gorai.001G092300 Gossypium raimondii HOM05D006899 ORTHO05D008566 3.7e-44 182.2 120 83.3
Gohir.A07G080700 Gossypium hirsutum HOM05D006899 ORTHO05D008566 4.9e-44 181.8 195 58.5
Gohir.D07G086300 Gossypium hirsutum HOM05D006899 ORTHO05D008566 4.9e-44 181.8 120 82.5
QL08p044873 Quercus lobata HOM05D006899 ORTHO05D008566 4.9e-44 181.8 193 59.1
THA.LOC104803370 Tarenaya hassleriana HOM05D006899 ORTHO05D008566 6.4e-44 181.4 195 65.1
GSVIVG01020847001 Vitis vinifera HOM05D006899 ORTHO05D008566 6.4e-44 181.4 121 81.8
Cpa.g.sc50.104 Carica papaya HOM05D006899 ORTHO05D008566 2.4e-43 179.5 120 81.7
VMungo0647G1903 Vigna mungo HOM05D006899 ORTHO05D008566 2.4e-43 179.5 120 82.5
Ciclev10032884m.g Citrus clementina HOM05D006899 ORTHO05D008566 4.1e-43 178.7 120 80.0
Actinidia03641 Actinidia chinensis HOM05D006899 ORTHO05D008566 7.0e-43 177.9 120 79.2
Glyma.02G285100 Glycine max HOM05D006899 ORTHO05D008566 7.0e-43 177.9 192 59.9
Nitab4.5_0002251g0050 Nicotiana tabacum HOM05D006899 ORTHO05D008566 7.0e-43 177.9 120 82.5
Peaxi162Scf00111g00221 Petunia axillaris HOM05D006899 ORTHO05D008566 9.2e-43 177.6 120 80.8
Phvul.008G193700 Phaseolus vulgaris HOM05D006899 ORTHO05D008566 9.2e-43 177.6 191 58.1
Cfa023072 Carpinus fangiana HOM05D006899 ORTHO05D008566 1.2e-42 177.2 120 82.5
Nitab4.5_0001883g0020 Nicotiana tabacum HOM05D006899 ORTHO05D008566 1.6e-42 176.8 120 81.7
Haze_13530 Corylus avellana HOM05D006899 ORTHO05D008566 2.0e-42 176.4 120 81.7
arahy.Tifrunner.gnm1.ann1.SNQ1P9 Arachis hypogaea HOM05D006899 ORTHO05D008566 2.7e-42 176.0 194 59.8
Atru.chr6.2058 Acer truncatum HOM05D006899 ORTHO05D008566 3.5e-42 175.6 118 80.5
Cc05_g09700 Coffea canephora HOM05D006899 ORTHO05D008566 4.6e-42 175.3 117 80.3
Oeu013822.1 Olea europaea HOM05D006899 ORTHO05D008566 4.6e-42 175.3 193 57.0
Thecc.01G170200 Theobroma cacao HOM05D006899 ORTHO05D008566 6.0e-42 174.9 197 57.4
CsaV3_4G031920 Cucumis sativus L. HOM05D006899 ORTHO05D008566 1.0e-41 174.1 121 81.8
Potri.002G058000 Populus trichocarpa HOM05D006899 ORTHO05D008566 1.0e-41 174.1 196 56.1
COL.COLO4_08896 Corchorus olitorius HOM05D006899 ORTHO05D008566 1.3e-41 173.7 195 55.9
Nn4g26539 Nelumbo nucifera HOM05D006899 ORTHO05D008566 1.3e-41 173.7 161 66.5
LjContig00049g0021241 Lotus japonicus HOM05D006899 ORTHO05D008566 1.7e-41 173.3 192 57.3
TWI59G0652 Tripterygium wilfordii HOM05D006899 ORTHO05D008566 1.7e-41 173.3 152 66.4
Sed0025977 Sechium edule HOM05D006899 ORTHO05D008566 2.3e-41 172.9 119 81.5
MELO3C026968.2 Cucumis melo HOM05D006899 ORTHO05D008566 3.0e-41 172.6 121 81.0
Oeu020934.1 Olea europaea HOM05D006899 ORTHO05D008566 3.0e-41 172.6 193 56.5
arahy.Tifrunner.gnm1.ann1.226PX6 Arachis hypogaea HOM05D006899 ORTHO05D008566 3.9e-41 172.2 194 58.8
ClCG11G016470 Citrullus lanatus HOM05D006899 ORTHO05D008566 3.9e-41 172.2 118 81.4
TPR.G12679 Trifolium pratense HOM05D006899 ORTHO05D008566 3.9e-41 172.2 185 56.8
MD09G1149700 Malus domestica HOM05D006899 ORTHO05D008566 5.0e-41 171.8 121 78.5
Migut.E01772 Erythranthe guttata HOM05D006899 ORTHO05D008566 6.6e-41 171.4 190 56.8
Glyma.14G029700 Glycine max HOM05D006899 ORTHO05D008566 6.6e-41 171.4 192 58.9
Potri.005G204200 Populus trichocarpa HOM05D006899 ORTHO05D008566 6.6e-41 171.4 121 79.3
Medtr5g091190 Medicago truncatula HOM05D006899 ORTHO05D008566 8.6e-41 171.0 185 57.8
PGSC0003DMG400017304 Solanum tuberosum HOM05D006899 ORTHO05D008566 8.6e-41 171.0 120 79.2
SGA_v2.0_scaffold4G02123 Striga asiatica HOM05D006899 ORTHO05D008566 8.6e-41 171.0 121 77.7
TAR627G0648 Trochodendron aralioides HOM05D006899 ORTHO05D008566 1.1e-40 170.6 120 75.8
PGR042G1005 Punica granatum HOM05D006899 ORTHO05D008566 1.5e-40 170.2 120 76.7
Hund24233 Selenicereus undatus HOM05D006899 ORTHO05D008566 1.5e-40 170.2 126 73.8
Sopen07g029600 Solanum pennellii HOM05D006899 ORTHO05D008566 2.5e-40 169.5 120 78.3
Manes.10G088300 Manihot esculenta HOM05D006899 ORTHO05D008566 5.6e-40 168.3 125 76.0
Prupe.3G176400 Prunus persica HOM05D006899 ORTHO05D008566 5.6e-40 168.3 200 56.0
SalBow7G1887 Salvia bowleyana HOM05D006899 ORTHO05D008566 5.6e-40 168.3 120 77.5
Solyc07g056240.3 Solanum lycopersicum HOM05D006899 ORTHO05D008566 7.3e-40 167.9 120 77.5
MD17G1136600 Malus domestica HOM05D006899 ORTHO05D008566 1.2e-39 167.2 121 76.9
MSTRG.12841 Avicennia marina HOM05D006899 ORTHO05D008566 1.6e-39 166.8 117 79.5
CANSAT64G2357 Cannabis sativa HOM05D006899 ORTHO05D008566 1.6e-39 166.8 119 77.3
Sc13g0007020 Simmondsia chinensis HOM05D006899 ORTHO05D008566 2.1e-39 166.4 120 76.7
AUR62015134 Chenopodium quinoa HOM05D006899 ORTHO05D008566 6.2e-39 164.9 119 77.3
FAN02G3475 Fragaria x ananassa HOM05D006899 ORTHO05D008566 1.1e-38 164.1 118 76.3
FAN09G4704 Fragaria x ananassa HOM05D006899 ORTHO05D008566 1.1e-38 164.1 118 76.3
FAN14G2046 Fragaria x ananassa HOM05D006899 ORTHO05D008566 1.1e-38 164.1 118 76.3
FvH4_6g38570 Fragaria vesca HOM05D006899 ORTHO05D008566 2.3e-38 162.9 118 75.4
Duzib138G0065 Durio zibethinus HOM05D006899 ORTHO05D008566 4.0e-38 162.2 185 56.2
EL10Ac9g22843 Beta vulgaris HOM05D006899 ORTHO05D008566 5.2e-38 161.8 120 78.3
FAN05G4631 Fragaria x ananassa HOM05D006899 ORTHO05D008566 5.2e-38 161.8 190 55.3
RcHm_v2.0_Chr2g0151981 Rosa chinensis HOM05D006899 ORTHO05D008566 1.5e-37 160.2 118 75.4
Eucgr.A02015 Eucalyptus grandis HOM05D006899 ORTHO05D008566 2.0e-37 159.8 123 73.2
AUR62017595 Chenopodium quinoa HOM05D006899 ORTHO05D008566 5.8e-37 158.3 119 74.8
ECA233G0523 Erigeron canadensis HOM05D006899 ORTHO05D008566 5.8e-37 158.3 117 72.6
Sabra02G0047300 Salix brachista HOM05D006899 ORTHO05D008566 7.5e-37 157.9 195 53.3
Lj1P601T16 Lonicera japonica HOM05D006899 ORTHO05D008566 2.9e-36 156.0 89 89.9
Aqoxy1G02918 Aquilegia oxysepala HOM05D006899 ORTHO05D008566 1.9e-35 153.3 121 71.1
Lalb_Chr04g0248871 Lupinus albus HOM05D006899 ORTHO05D008566 1.6e-34 150.2 94 84.0
Ah.01g013620 Amaranthus hybridus HOM05D006899 ORTHO05D008566 1.0e-33 147.5 101 80.2
HanXRQChr17g0554721 Helianthus annuus HOM05D006899 ORTHO05D008566 1.0e-33 147.5 117 68.4
MBI10_g21113_MAGBIO Magnolia biondii HOM05D006899 ORTHO05D008566 1.3e-33 147.1 120 70.8
CSS0032532 Camellia sinensis var. sinensis HOM05D006899 ORTHO05D008566 2.3e-33 146.4 121 70.2
Duzib133G1045 Durio zibethinus HOM05D006899 ORTHO05D008566 6.6e-33 144.8 103 73.8
Dinv09142 Davidia involucrata HOM05D006899 ORTHO05D008566 8.6e-33 144.4 174 53.4
Os01g0666600 Oryza sativa ssp. japonica HOM05D006899 ORTHO05D008566 8.9e-30 134.4 124 62.1
Lsat_1_v5_gn_8_137860 Lactuca sativa HOM05D006899 ORTHO05D008566 7.6e-29 131.3 114 64.0
CDE05G0801 Ceratophyllum demersum HOM05D006899 ORTHO05D008566 6.4e-28 128.3 119 62.2
CSS0025344 Camellia sinensis var. sinensis HOM05D006899 ORTHO05D008566 1.1e-27 127.5 121 62.8
PSO478G1301 Papaver somniferum HOM05D006899 ORTHO05D008566 7.1e-27 124.8 119 62.2
PSO675G8667 Papaver somniferum HOM05D006899 ORTHO05D008566 7.1e-27 124.8 119 62.2
HPP92_010055 Vanilla planifolia HOM05D006899 ORTHO05D008566 2.1e-26 123.2 116 62.1
Zm00001eb157430 Zea mays HOM05D006899 ORTHO05D008566 2.1e-26 123.2 127 55.1
PSO541G6147 Papaver somniferum HOM05D006899 ORTHO05D008566 3.5e-26 122.5 119 61.3
Hund24244 Selenicereus undatus HOM05D006899 ORTHO05D008566 3.9e-25 119.0 93 68.8
Nitab4.5_0004243g0030 Nicotiana tabacum HOM05D006899 ORTHO05D008566 5.1e-25 118.6 83 79.5
unitig_60.g25592 Utricularia gibba HOM05D006899 ORTHO05D008566 1.9e-24 116.7 117 58.1
ATR0585G139 Amborella trichopoda HOM05D006899 ORTHO05D008566 2.8e-23 112.8 100 64.0
Nitab4.5_0004950g0010 Nicotiana tabacum HOM05D006899 ORTHO05D008566 6.2e-23 111.7 81 79.0
Nitab4.5_0009604g0020 Nicotiana tabacum HOM05D006899 ORTHO05D008566 6.2e-23 111.7 81 79.0
Pp3c13_6560 Physcomitrium patens HOM05D006899 ORTHO05D008566 3.8e-20 102.4 115 47.8
Mapoly0120s0054 Marchantia polymorpha HOM05D006899 ORTHO05D008566 3.9e-17 92.4 118 49.2
AagrBONN_evm.TU.Sc2ySwM_368.298 Anthoceros agrestis HOM05D006899 ORTHO05D008566 1.1e-16 90.9 119 44.5
Nitab4.5_0002251g0080 Nicotiana tabacum HOM05D006899 ORTHO05D008566 4.3e-16 89.0 108 51.9
SMO353G0201 Selaginella moellendorffii HOM05D006899 ORTHO05D008566 2.9e-12 76.3 90 52.2
TWI23G0441 Tripterygium wilfordii HOM05D006899 ORTHO05D008566 4.9e-12 75.5 99 52.5
Medtr5g016040 Medicago truncatula HOM05D006899 ORTHO05D008566 6.4e-12 75.1 81 58.0


User provided reference genes

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