Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 0.0e+00 1401.3 778 100.0
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 1.9e-304 1048.9 780 76.8
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 4.5e-253 878.2 787 66.1
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 1.1e-190 671.0 803 50.8
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 1.8e-188 663.7 787 52.5
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 2.5e-187 659.8 800 50.8
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 6.9e-185 651.7 779 52.6
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 9.0e-185 651.4 759 52.6
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 3.0e-180 636.3 784 51.3
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 2.5e-179 633.3 726 50.7
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 4.2e-166 589.3 695 53.4
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 5.5e-166 589.0 732 53.7
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 9.3e-166 588.2 732 53.7
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 5.1e-164 582.4 673 54.1
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 6.7e-164 582.0 732 53.4
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 7.4e-155 552.0 742 48.2
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 1.9e-126 457.6 671 46.3
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 1.0e-124 451.8 683 41.7
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 2.2e-122 444.1 567 51.7
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 4.9e-122 443.0 678 40.9
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 8.3e-122 442.2 678 40.7
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 3.5e-120 436.8 678 40.6
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 3.8e-119 433.3 668 41.0
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 6.0e-112 409.5 652 39.6
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 1.1e-110 405.2 676 41.3
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 4.0e-108 396.7 679 38.7
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 4.9e-106 389.8 666 39.8
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 4.9e-106 389.8 803 37.9
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 1.6e-104 384.8 648 38.3
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 2.1e-104 384.4 712 39.7
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 3.5e-104 383.6 660 39.1
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 7.8e-104 382.5 609 40.9
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 1.7e-103 381.3 687 38.7
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 1.9e-102 377.9 658 38.4
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 5.6e-102 376.3 664 40.5
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 5.6e-102 376.3 669 38.3
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 7.3e-102 375.9 681 37.2
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 1.6e-101 374.8 712 38.2
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 2.1e-101 374.4 658 38.4
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 2.3e-100 370.9 776 34.5
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 4.0e-100 370.2 781 38.3
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 3.4e-99 367.1 682 39.0
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 1.3e-98 365.2 695 37.4
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 1.7e-98 364.8 714 37.4
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 1.7e-98 364.8 674 38.3
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 2.2e-98 364.4 685 38.7
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 3.7e-98 363.6 743 39.6
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 3.7e-98 363.6 688 36.8
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 6.4e-98 362.8 689 39.2
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 1.9e-97 361.3 728 40.1
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 1.9e-97 361.3 722 39.3
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 5.4e-97 359.8 625 38.4
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 4.6e-96 356.7 664 39.2
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 7.8e-96 355.9 659 41.9
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 1.7e-95 354.8 745 36.8
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 2.3e-95 354.4 675 37.3
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 1.9e-94 351.3 679 37.7
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 1.6e-93 348.2 742 35.7
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 2.1e-93 347.8 659 40.1
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 6.2e-93 346.3 686 35.1
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 2.4e-92 344.4 663 38.5
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 5.2e-92 343.2 664 35.7
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 6.8e-92 342.8 709 37.8
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 5.8e-91 339.7 698 36.7
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 7.6e-91 339.3 708 35.0
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 1.7e-90 338.2 675 37.2
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 3.8e-90 337.0 684 35.1
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 3.2e-89 334.0 671 36.4
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 4.2e-89 333.6 670 36.1
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 4.6e-88 330.1 707 37.9
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 5.1e-87 326.6 771 32.8
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 6.6e-87 326.2 649 34.8
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 4.4e-83 313.5 726 37.9
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 4.4e-83 313.5 668 34.4
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 5.8e-83 313.2 710 36.8
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 9.9e-83 312.4 727 37.4
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 9.9e-83 312.4 727 33.4
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 6.4e-82 309.7 659 36.4
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 1.1e-81 308.9 816 33.9
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 4.2e-81 307.0 706 33.3
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 4.2e-81 307.0 683 34.0
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 5.4e-81 306.6 737 32.0
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 6.0e-80 303.1 685 35.5
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 1.3e-79 302.0 690 33.2
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 1.3e-79 302.0 734 36.0
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 1.3e-77 295.4 734 33.1
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 2.1e-77 294.7 644 36.5
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 4.8e-77 293.5 661 32.7
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 1.1e-76 292.4 755 31.0
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 4.0e-76 290.4 689 36.7
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 5.3e-76 290.0 673 32.5
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 2.9e-74 284.3 646 33.3
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 2.9e-74 284.3 657 32.0
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 3.8e-74 283.9 674 32.3
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 5.4e-73 280.0 669 32.6
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 9.3e-73 279.3 648 31.5
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 1.1e-70 272.3 738 31.2
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 1.4e-68 265.4 691 35.6
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 3.1e-68 264.2 719 29.5
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 1.1e-65 255.8 543 35.2
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 3.2e-65 254.2 590 31.7
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 4.2e-65 253.8 692 36.3
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 2.7e-64 251.1 646 30.2
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 1.9e-62 245.0 687 29.5
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 9.6e-62 242.7 853 30.6
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 2.8e-61 241.1 682 30.6
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 3.7e-61 240.7 796 28.5
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 4.8e-61 240.4 752 28.6
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 3.1e-60 237.7 810 27.0
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 1.2e-59 235.7 700 29.1
BcaC08g44896 Brassica carinata HOM05D005245 ORTHO05D006388 3.2e-57 227.6 230 57.4
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 3.2e-57 227.6 675 33.0
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 4.8e-53 213.8 298 43.0
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 1.4e-52 212.2 637 31.6
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 1.2e-51 209.1 266 45.5
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 3.4e-51 207.6 669 26.3
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 1.4e-49 202.2 195 52.8
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 3.7e-45 187.6 648 26.1
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 1.2e-40 172.6 600 26.0
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 4.7e-40 170.6 427 31.9
THA.LOC104802250 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 5.9e-35 153.7 167 56.9
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 2.5e-33 148.3 270 34.4
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 3.6e-32 144.4 202 39.1
Atru.chr3.860 Acer truncatum HOM05D005245 ORTHO05D006388 1.1e-30 139.4 223 36.8
Glyma.12G121100 Glycine max HOM05D005245 ORTHO05D006388 2.6e-30 138.3 131 55.0
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 9.1e-28 129.8 360 33.1
CDE10G0045 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 2.6e-27 128.3 149 44.3
SGA_v2.0_scaffold51G18645 Striga asiatica HOM05D005245 ORTHO05D006388 2.5e-25 121.7 133 50.4
Sabra13G0101200 Salix brachista HOM05D005245 ORTHO05D006388 2.4e-20 105.1 134 47.8
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 4.1e-20 104.4 348 28.2
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 4.5e-19 100.9 796 24.6
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 1.3e-18 99.4 407 25.6
SGA_v2.0_scaffold51G18646 Striga asiatica HOM05D005245 ORTHO05D006388 1.9e-17 95.5 251 29.5
SEGI_35055 Sequoiadendron giganteum HOM05D005245 ORTHO05D006388 7.2e-17 93.6 177 33.3
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 3.7e-13 81.3 200 31.0
Zm00001eb238760 Zea mays HOM05D005245 ORTHO05D006388 4.1e-12 77.8 185 29.2
unitig_62.g23335 Utricularia gibba HOM05D005245 ORTHO05D006388 2.3e-10 72.0 130 34.6
RcHm_v2.0_Chr4g0423021 Rosa chinensis HOM05D005245 ORTHO05D006388 8.6e-10 70.1 76 48.7


User provided reference genes

Program Settings