Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G40620 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 2.8e-61 238.4 122 100.0
Carub.0004s2460 Capsella rubella HOM05D003503 ORTHO05D003885 2.8e-61 238.4 122 100.0
AT2G42260 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 3.2e-60 235.0 122 97.5
CARHR137300 Cardamine hirsuta HOM05D003503 ORTHO05D003885 9.2e-60 233.4 122 97.5
Sp4g24440 Schrenkiella parvula HOM05D003503 ORTHO05D003885 5.9e-59 230.7 122 96.7
Thhalv10017150m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 7.8e-59 230.3 122 95.9
Aa31LG1G24010 Aethionema arabicum HOM05D003503 ORTHO05D003885 1.4e-52 209.5 122 90.2
BcaC02g12471 Brassica carinata HOM05D003503 ORTHO05D003885 7.5e-46 187.2 118 86.4
BcaNung05887 Brassica carinata HOM05D003503 ORTHO05D003885 7.5e-46 187.2 118 86.4
C04p03390 Brassica napus HOM05D003503 ORTHO05D003885 7.5e-46 187.2 118 86.4
THA.LOC104802399 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 3.7e-45 184.9 123 79.7
A05p02800 Brassica napus HOM05D003503 ORTHO05D003885 2.4e-44 182.2 119 84.0
BraA05t19272Z Brassica rapa HOM05D003503 ORTHO05D003885 2.4e-44 182.2 119 84.0
BolC4t21976H Brassica oleracea HOM05D003503 ORTHO05D003885 1.2e-43 179.9 119 84.0
THA.LOC104824461 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 5.8e-38 161.0 119 73.1
AL5G39520 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 9.9e-38 160.2 123 73.2
Carub.0005s2470 Capsella rubella HOM05D003503 ORTHO05D003885 1.7e-37 159.5 123 72.4
AT3G57860 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 2.1e-35 152.5 118 72.9
CSS0007658 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 2.3e-34 149.1 120 64.2
Actinidia38570 Actinidia chinensis HOM05D003503 ORTHO05D003885 2.1e-32 142.5 120 64.2
BcaNung04400 Brassica carinata HOM05D003503 ORTHO05D003885 2.1e-32 142.5 115 73.9
Actinidia20299 Actinidia chinensis HOM05D003503 ORTHO05D003885 2.8e-32 142.1 121 64.5
QL07p023657 Quercus lobata HOM05D003503 ORTHO05D003885 8.1e-32 140.6 121 62.8
Rhsim04G0098700 Rhododendron simsii HOM05D003503 ORTHO05D003885 8.1e-32 140.6 121 63.6
Actinidia17255 Actinidia chinensis HOM05D003503 ORTHO05D003885 1.1e-31 140.2 120 64.2
CiPaw.10G029000 Carya illinoinensis HOM05D003503 ORTHO05D003885 1.4e-31 139.8 117 63.2
Thhalv10006194m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 8.9e-31 137.1 121 65.3
vmacro09100 Vaccinium macrocarpon HOM05D003503 ORTHO05D003885 8.9e-31 137.1 120 62.5
CSS0013310 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 2.0e-30 136.0 113 63.7
Aa31LG10G12570 Aethionema arabicum HOM05D003503 ORTHO05D003885 2.6e-30 135.6 120 66.7
Cc06_g16370 Coffea canephora HOM05D003503 ORTHO05D003885 2.6e-30 135.6 120 62.5
BcaC07g40160 Brassica carinata HOM05D003503 ORTHO05D003885 3.4e-30 135.2 120 63.3
Sp5g04860 Schrenkiella parvula HOM05D003503 ORTHO05D003885 4.4e-30 134.8 125 62.4
Nitab4.5_0000016g0070 Nicotiana tabacum HOM05D003503 ORTHO05D003885 5.8e-30 134.4 122 61.5
QL07p023685 Quercus lobata HOM05D003503 ORTHO05D003885 7.6e-30 134.0 121 61.2
CARHR168170 Cardamine hirsuta HOM05D003503 ORTHO05D003885 1.3e-29 133.3 124 62.9
C08p33430 Brassica napus HOM05D003503 ORTHO05D003885 1.7e-29 132.9 125 62.4
Ciclev10005700m.g Citrus clementina HOM05D003503 ORTHO05D003885 3.8e-29 131.7 122 61.5
TAR369G0624 Trochodendron aralioides HOM05D003503 ORTHO05D001307 8.4e-29 130.6 122 58.2
Nitab4.5_0010571g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.1e-28 130.2 122 60.7
BcaC07g40221 Brassica carinata HOM05D003503 ORTHO05D003885 2.4e-28 129.0 125 60.0
A09p50720 Brassica napus HOM05D003503 ORTHO05D003885 3.2e-28 128.6 116 63.8
BcaC07g40334 Brassica carinata HOM05D003503 ORTHO05D003885 4.2e-28 128.3 125 60.0
Hma1.2p1_0640F.1_g194090 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 4.2e-28 128.3 118 61.9
CiPaw.09G033400 Carya illinoinensis HOM05D003503 ORTHO05D003885 1.2e-27 126.7 116 62.9
Eucgr.A02419 Eucalyptus grandis HOM05D003503 ORTHO05D003885 2.1e-27 125.9 123 56.9
Hma1.2p1_0174F.1_g077040 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 2.1e-27 125.9 118 61.0
MSTRG.10833 Avicennia marina HOM05D003503 ORTHO05D003885 2.7e-27 125.6 119 59.7
TWI74G1092 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 2.7e-27 125.6 121 61.2
CSS0023140 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 3.5e-27 125.2 104 62.5
Cfa020096 Carpinus fangiana HOM05D003503 ORTHO05D003885 6.0e-27 124.4 122 54.9
Haze_20095 Corylus avellana HOM05D003503 ORTHO05D003885 6.0e-27 124.4 122 54.9
GSVIVG01033358001 Vitis vinifera HOM05D003503 ORTHO05D003885 6.0e-27 124.4 118 60.2
Atru.chr1.937 Acer truncatum HOM05D003503 ORTHO05D003885 1.3e-26 123.2 122 56.6
DCAR_024103 Daucus carota HOM05D003503 ORTHO05D003885 3.0e-26 122.1 120 55.0
Migut.K00058 Erythranthe guttata HOM05D003503 ORTHO05D003885 5.1e-26 121.3 119 58.0
DCAR_024104 Daucus carota HOM05D003503 ORTHO05D003885 8.7e-26 120.6 120 54.2
Peaxi162Scf00258g00220 Petunia axillaris HOM05D003503 ORTHO05D003885 1.1e-25 120.2 121 57.0
Manes.03G008800 Manihot esculenta HOM05D003503 ORTHO05D003885 1.5e-25 119.8 122 55.7
BcaB01g03443 Brassica carinata HOM05D002899 ORTHO05D003885 2.5e-25 119.0 99 72.7
Haze_19934 Corylus avellana HOM05D003503 ORTHO05D003885 2.5e-25 119.0 117 57.3
SalBow6G1355 Salvia bowleyana HOM05D003503 ORTHO05D003885 5.6e-25 117.9 120 56.7
Cfa016885 Carpinus fangiana HOM05D003503 ORTHO05D003885 7.3e-25 117.5 122 54.9
Prupe.7G071700 Prunus persica HOM05D003503 ORTHO05D003885 7.3e-25 117.5 122 55.7
Nitab4.5_0004063g0080 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.3e-24 116.7 121 57.0
Thecc.05G166300 Theobroma cacao HOM05D003503 ORTHO05D003885 1.6e-24 116.3 122 56.6
Duzib106G0586 Durio zibethinus HOM05D003503 ORTHO05D003885 2.1e-24 115.9 122 56.6
Duzib128G0723 Durio zibethinus HOM05D003503 ORTHO05D003885 2.8e-24 115.5 122 58.2
SGA_v2.0_scaffold69G23080 Striga asiatica HOM05D003503 ORTHO05D003885 2.8e-24 115.5 121 54.5
MSTRG.26098 Avicennia marina HOM05D003503 ORTHO05D003885 6.2e-24 114.4 119 55.5
Peaxi162Scf00285g00427 Petunia axillaris HOM05D003503 ORTHO05D003885 6.2e-24 114.4 121 56.2
Peaxi162Scf00406g00711 Petunia axillaris HOM05D003503 ORTHO05D003885 8.1e-24 114.0 121 52.1
Dinv18112 Davidia involucrata HOM05D003503 ORTHO05D003885 1.4e-23 113.2 117 59.8
Nitab4.5_0006853g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 3.1e-23 112.1 121 55.4
Sabra06G0041000 Salix brachista HOM05D003503 ORTHO05D003885 3.1e-23 112.1 122 54.9
SHI33674 Sapria himalayana HOM05D003503 ORTHO05D003885 3.1e-23 112.1 114 52.6
MD14G1063100 Malus domestica HOM05D003503 ORTHO05D003885 9.0e-23 110.5 120 52.5
CANSAT80G0280 Cannabis sativa HOM05D003503 ORTHO05D003885 1.2e-22 110.2 123 54.5
CANSAT80G2578 Cannabis sativa HOM05D003503 ORTHO05D003885 1.2e-22 110.2 123 54.5
Gorai.007G361800 Gossypium raimondii HOM05D003503 ORTHO05D003885 1.2e-22 110.2 124 54.0
CAN.G128.30 Capsicum annuum HOM05D003503 ORTHO05D003885 1.5e-22 109.8 122 55.7
Sed0025913 Sechium edule HOM05D003503 ORTHO05D003885 2.0e-22 109.4 120 56.7
HanXRQChr05g0132771 Helianthus annuus HOM05D003503 ORTHO05D003885 2.6e-22 109.0 124 53.2
HanXRQChr06g0176361 Helianthus annuus HOM05D003503 ORTHO05D003885 2.6e-22 109.0 124 51.6
Manes.16G129700 Manihot esculenta HOM05D003503 ORTHO05D003885 2.6e-22 109.0 122 52.5
Thecc.06G029500 Theobroma cacao HOM05D003503 ORTHO05D003885 3.4e-22 108.6 122 52.5
Dinv24108 Davidia involucrata HOM05D003503 ORTHO05D000616 4.4e-22 108.2 120 52.5
Potri.006G057800 Populus trichocarpa HOM05D003503 ORTHO05D003885 4.4e-22 108.2 122 53.3
Solyc10g080400.2 Solanum lycopersicum HOM05D003503 ORTHO05D003885 4.4e-22 108.2 121 53.7
Cpa.g.sc85.98 Carica papaya HOM05D003503 ORTHO05D003885 5.8e-22 107.8 129 50.4
Gohir.D11G331100 Gossypium hirsutum HOM05D003503 ORTHO05D003885 5.8e-22 107.8 125 54.4
PGSC0003DMG402023713 Solanum tuberosum HOM05D003503 ORTHO05D003885 1.3e-21 106.7 121 52.9
FAN05G4212 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.9e-21 105.5 102 55.9
Nn2g15511 Nelumbo nucifera HOM05D003503 ORTHO05D003885 2.9e-21 105.5 120 48.3
Sopen10g030940 Solanum pennellii HOM05D003503 ORTHO05D003885 2.9e-21 105.5 121 52.9
BcaC01g05380 Brassica carinata HOM05D003503 ORTHO05D003885 3.8e-21 105.1 127 49.6
PGR004G1207 Punica granatum HOM05D003503 ORTHO05D003885 3.8e-21 105.1 117 53.0
MD12G1062400 Malus domestica HOM05D003503 ORTHO05D003885 4.9e-21 104.8 122 48.4
FAN05G1437 Fragaria x ananassa HOM05D003503 ORTHO05D003885 6.4e-21 104.4 102 55.9
Gohir.A11G313900 Gossypium hirsutum HOM05D003503 ORTHO05D003885 6.4e-21 104.4 125 53.6
Potri.016G050300 Populus trichocarpa HOM05D003503 ORTHO05D003885 6.4e-21 104.4 122 52.5
COL.COLO4_28742 Corchorus olitorius HOM05D003503 ORTHO05D003885 1.1e-20 103.6 120 52.5
FvH4_6g18600 Fragaria vesca HOM05D003503 ORTHO05D003885 1.1e-20 103.6 97 57.7
FAN14G4545 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.1e-20 103.6 97 57.7
Cpa.g.sc85.97 Carica papaya HOM05D003503 ORTHO05D003885 1.4e-20 103.2 108 50.9
FAN09G1919 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.4e-20 103.2 100 55.0
ClCG04G000340 Citrullus lanatus HOM05D003503 ORTHO05D003885 2.4e-20 102.4 120 53.3
FAN02G2343 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.4e-20 102.4 97 56.7
ECA248G0895 Erigeron canadensis HOM05D003503 ORTHO05D003885 4.2e-20 101.7 125 48.0
MELO3C023180.2 Cucumis melo HOM05D003503 ORTHO05D003885 5.4e-20 101.3 111 55.9
DCAR_020468 Daucus carota HOM05D003503 ORTHO05D003885 5.4e-20 101.3 118 52.5
ECA248G2321 Erigeron canadensis HOM05D003503 ORTHO05D003885 5.4e-20 101.3 125 48.8
CsaV3_4G010540 Cucumis sativus L. HOM05D003503 ORTHO05D003885 7.1e-20 100.9 111 55.9
FvH4_1g24920 Fragaria vesca HOM05D003503 ORTHO05D003885 2.7e-19 99.0 92 64.1
FAN23G1753 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.7e-19 99.0 92 64.1
FAN23G2494 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.7e-19 99.0 92 64.1
HanXRQChr15g0483571 Helianthus annuus HOM05D003503 ORTHO05D003885 2.7e-19 99.0 96 60.4
Sabra16G0053800 Salix brachista HOM05D003503 ORTHO05D003885 3.5e-19 98.6 122 49.2
Lju124A33T34 Lonicera japonica HOM05D003503 ORTHO05D003885 4.6e-19 98.2 91 60.4
FAN26G0276 Fragaria x ananassa HOM05D003503 ORTHO05D003885 6.0e-19 97.8 92 63.0
FAN26G0411 Fragaria x ananassa HOM05D003503 ORTHO05D003885 6.0e-19 97.8 92 63.0
Sed0010654 Sechium edule HOM05D003503 ORTHO05D003885 6.0e-19 97.8 111 56.8
Lalb_Chr18g0047601 Lupinus albus HOM05D003503 ORTHO05D003885 1.0e-18 97.1 100 59.0
RcHm_v2.0_Chr3g0473161 Rosa chinensis HOM05D003503 ORTHO05D003885 1.7e-18 96.3 90 60.0
Lsat_1_v5_gn_8_79401 Lactuca sativa HOM05D003503 ORTHO05D003885 3.0e-18 95.5 120 45.0
RcHm_v2.0_Chr3g0473181 Rosa chinensis HOM05D003503 ORTHO05D003885 5.1e-18 94.7 90 58.9
SGA_v2.0_scaffold105G30470 Striga asiatica HOM05D003503 ORTHO05D003885 8.7e-18 94.0 117 47.9
FAN19G1882 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.9e-17 92.8 88 61.4
Migut.J01803 Erythranthe guttata HOM05D003503 ORTHO05D003885 2.5e-17 92.4 96 55.2
Oeu033755.1 Olea europaea HOM05D003503 ORTHO05D003885 4.3e-17 91.7 114 47.4
PSO339G6426 Papaver somniferum HOM05D003503 ORTHO05D003885 7.3e-17 90.9 110 47.3
PSO384G2274 Papaver somniferum HOM05D003503 ORTHO05D003885 1.6e-16 89.7 109 47.7
SalBow1G6809 Salvia bowleyana HOM05D003503 ORTHO05D003885 3.6e-16 88.6 85 61.2
Lalb_Chr15g0078851 Lupinus albus HOM05D003503 ORTHO05D003885 4.8e-16 88.2 99 57.6
PSO675G0055 Papaver somniferum HOM05D003503 ORTHO05D003885 6.2e-16 87.8 121 47.1
PSO541G0601 Papaver somniferum HOM05D003503 ORTHO05D003885 8.1e-16 87.4 121 47.1
VMungo1383G2219 Vigna mungo HOM05D003503 ORTHO05D003885 2.4e-15 85.9 79 62.0
Phvul.001G138700 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 3.1e-15 85.5 80 62.5
Glyma.03G141800 Glycine max HOM05D003503 ORTHO05D003885 4.0e-15 85.1 122 49.2
C04p28750 Brassica napus HOM05D003503 ORTHO05D003885 1.5e-14 83.2 95 51.6
Glyma.19G144400 Glycine max HOM05D003503 ORTHO05D003885 2.0e-14 82.8 125 48.8
TWI53G0899 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 9.9e-14 80.5 117 48.7
PGR031G3517 Punica granatum HOM05D003503 ORTHO05D003885 2.2e-13 79.3 130 39.2
arahy.Tifrunner.gnm1.ann1.E4BIS3 Arachis hypogaea HOM05D003503 ORTHO05D003885 2.9e-13 79.0 122 45.9
Psat3g070200 Pisum sativum HOM05D003503 ORTHO05D003885 2.9e-13 79.0 73 60.3
SalBow1G6855 Salvia bowleyana HOM05D003503 ORTHO05D003885 2.9e-13 79.0 64 70.3
arahy.Tifrunner.gnm1.ann1.P0WGR4 Arachis hypogaea HOM05D003503 ORTHO05D003885 3.8e-13 78.6 122 45.9
AUR62021551 Chenopodium quinoa HOM05D003503 ORTHO05D003885 6.4e-13 77.8 115 42.6
Lj1g0016608 Lotus japonicus HOM05D003503 ORTHO05D003885 6.4e-13 77.8 100 52.0
TPR.G4785 Trifolium pratense HOM05D003503 ORTHO05D003885 1.1e-12 77.0 73 58.9
TAR629G2270 Trochodendron aralioides HOM05D003503 ORTHO05D003885 1.1e-12 77.0 109 42.2
Aqoxy2G00107 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 1.9e-12 76.3 100 49.0
C07p14610 Brassica napus HOM05D003503 ORTHO05D003885 4.2e-12 75.1 121 43.8
Hund02581 Selenicereus undatus HOM05D003503 ORTHO05D003885 5.4e-12 74.7 115 40.9
EL10Ac5g11139 Beta vulgaris HOM05D003503 ORTHO05D003885 7.1e-12 74.3 99 46.5
Medtr7g092570 Medicago truncatula HOM05D003503 ORTHO05D003885 9.3e-12 73.9 74 55.4
HanXRQChr06g0172301 Helianthus annuus HOM05D003503 ORTHO05D003885 2.1e-11 72.8 54 68.5
Hund02580 Selenicereus undatus HOM05D003503 ORTHO05D003885 3.5e-11 72.0 100 46.0
C03p27180 Brassica napus HOM05D003503 ORTHO05D003885 4.6e-11 71.6 78 51.3
CSS0045770 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 4.6e-11 71.6 50 76.0
Hund02582 Selenicereus undatus HOM05D003503 ORTHO05D003885 4.6e-11 71.6 98 45.9
Ca_08494_v3 Cicer arietinum L. HOM05D003503 ORTHO05D003885 1.0e-10 70.5 78 59.0
Sc19g0006890 Simmondsia chinensis HOM05D003503 ORTHO05D003885 1.9e-09 66.2 115 38.3
Aqoxy2G00088 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 3.3e-09 65.5 48 70.8
Aqoxy2G00125 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 3.3e-09 65.5 48 70.8
Phvul.008G153400 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 5.6e-09 64.7 84 50.0
AUR62008542 Chenopodium quinoa HOM05D003503 ORTHO05D003885 2.1e-08 62.8 85 43.5
Phvul.011G101601 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 2.8e-08 62.4 85 48.2
Ah.13g073290 Amaranthus hybridus HOM05D003503 ORTHO05D003885 1.4e-07 60.1 69 44.9
unitig_749.g14030 Utricularia gibba HOM05D003503 ORTHO05D003885 3.1e-07 58.9 48 68.8
TAR633G0309 Trochodendron aralioides HOM05D000064 ORTHO05D003885 4.0e-07 58.5 50 52.0
AUR62002437 Chenopodium quinoa HOM05D003503 ORTHO05D003885 9.0e-07 57.4 73 47.9
AUR62023750 Chenopodium quinoa HOM05D003503 ORTHO05D003885 9.0e-07 57.4 73 47.9
RcHm_v2.0_Chr7g0219161 Rosa chinensis HOM05D003503 ORTHO05D003885 9.0e-07 57.4 60 53.3
EL10Ac3g06131 Beta vulgaris HOM05D003503 ORTHO05D003885 1.5e-06 56.6 72 47.2


User provided reference genes

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