Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 3.5e-161 571.6 300 100.0
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 4.9e-155 551.2 300 95.7
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 1.7e-144 516.2 300 89.7
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 3.0e-144 515.4 300 89.7
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 3.6e-142 508.4 301 90.4
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 1.5e-140 503.1 295 89.5
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 2.6e-132 475.7 299 86.3
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 2.6e-132 475.7 299 86.3
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 3.4e-132 475.3 298 86.6
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 1.7e-131 473.0 296 86.1
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 4.2e-130 468.4 299 84.9
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 1.7e-128 463.0 299 82.6
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 4.8e-126 454.9 302 82.8
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 1.5e-124 449.9 311 77.5
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 7.4e-119 431.0 303 75.2
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 8.1e-118 427.6 311 74.3
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 3.4e-116 422.2 304 74.7
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 5.8e-116 421.4 312 73.7
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 2.9e-115 419.1 313 73.2
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 3.9e-112 408.7 300 72.7
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 5.1e-112 408.3 311 71.1
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 3.3e-111 405.6 303 72.6
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 7.4e-111 404.4 303 72.6
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 2.1e-110 402.9 306 71.9
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 2.1e-110 402.9 306 71.9
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 1.1e-109 400.6 306 71.6
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 4.1e-109 398.7 304 71.1
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 5.0e-107 391.7 305 68.2
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 5.0e-107 391.7 305 68.2
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 1.1e-106 390.6 305 67.9
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 1.4e-106 390.2 303 66.3
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 1.4e-106 390.2 263 74.1
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 5.5e-106 388.3 302 67.5
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 5.5e-106 388.3 308 66.6
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 7.2e-106 387.9 263 73.4
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 1.8e-104 383.3 301 66.1
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 2.3e-104 382.9 314 66.6
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 3.9e-104 382.1 312 65.7
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 5.1e-104 381.7 309 65.7
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 3.3e-103 379.0 257 75.1
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 7.4e-103 377.9 259 73.7
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 7.4e-103 377.9 306 64.7
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 1.3e-102 377.1 261 73.2
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 1.6e-102 376.7 306 65.4
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 1.8e-101 373.2 305 64.9
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 1.8e-101 373.2 303 67.0
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 2.4e-101 372.9 305 64.9
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 2.4e-101 372.9 263 73.0
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 5.3e-101 371.7 305 65.6
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 5.3e-101 371.7 300 67.0
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 2.6e-100 369.4 310 62.6
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 2.6e-100 369.4 319 63.0
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 3.4e-100 369.0 257 72.4
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 5.9e-100 368.2 313 63.3
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 7.7e-100 367.9 290 66.9
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 1.3e-99 367.1 286 65.4
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 2.2e-99 366.3 313 63.9
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 2.2e-99 366.3 302 64.9
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 3.8e-99 365.5 305 63.6
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 3.8e-99 365.5 327 62.1
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 6.5e-99 364.8 262 71.0
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 6.5e-99 364.8 309 62.8
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 1.1e-98 364.0 256 71.9
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 1.4e-98 363.6 259 72.6
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 3.2e-98 362.5 283 68.2
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 1.6e-97 360.1 278 67.6
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 4.6e-97 358.6 247 73.7
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 4.6e-97 358.6 298 64.1
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 6.1e-97 358.2 295 65.4
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 7.9e-97 357.8 258 70.2
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 1.8e-96 356.7 279 67.0
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 3.0e-96 355.9 286 65.0
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 3.9e-96 355.5 291 66.0
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 1.7e-94 350.1 295 65.4
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 2.2e-94 349.7 254 71.7
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 3.7e-94 349.0 265 68.7
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 4.8e-94 348.6 256 68.0
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 4.8e-94 348.6 303 59.7
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 6.3e-94 348.2 262 67.2
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 1.4e-93 347.1 319 59.2
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 1.4e-93 347.1 319 59.2
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 4.1e-93 345.5 295 62.4
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 6.9e-93 344.7 248 70.2
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 6.9e-93 344.7 252 69.4
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 2.0e-92 343.2 300 60.0
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 5.9e-92 341.7 298 60.4
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 5.9e-92 341.7 302 59.9
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 1.0e-91 340.9 252 67.1
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 1.7e-91 340.1 276 64.9
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 5.0e-91 338.6 364 53.0
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 8.5e-91 337.8 282 62.4
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 3.2e-90 335.9 269 64.3
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 4.2e-90 335.5 256 66.8
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 9.4e-90 334.3 257 66.9
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 9.4e-90 334.3 236 71.2
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 9.4e-90 334.3 269 63.9
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 6.1e-89 331.6 236 69.9
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 7.9e-89 331.3 263 65.4
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 8.8e-88 327.8 275 64.4
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 4.4e-87 325.5 296 61.1
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 5.7e-87 325.1 262 66.8
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 1.3e-86 323.9 295 58.6
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 1.3e-86 323.9 315 56.8
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 2.2e-86 323.2 261 64.8
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 6.3e-86 321.6 298 57.7
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 1.1e-85 320.9 222 70.3
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 5.3e-85 318.5 249 63.1
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 2.6e-84 316.2 280 60.0
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 5.9e-84 315.1 212 75.5
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 1.0e-83 314.3 303 57.8
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 2.9e-83 312.8 236 65.7
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 8.5e-83 311.2 246 64.2
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 1.1e-82 310.8 253 60.9
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 7.2e-82 308.1 334 54.2
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.6e-81 307.0 332 53.9
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 2.1e-81 306.6 270 61.1
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 6.1e-81 305.1 287 57.1
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 2.3e-80 303.1 309 55.7
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 4.0e-80 302.4 287 56.4
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 5.2e-80 302.0 269 60.6
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 2.0e-79 300.1 252 62.7
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 1.3e-78 297.4 225 68.4
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 1.1e-77 294.3 350 48.6
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 3.1e-77 292.7 239 60.7
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 9.1e-77 291.2 259 61.4
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 1.6e-76 290.4 243 61.7
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 2.0e-76 290.0 235 66.0
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 3.8e-75 285.8 297 51.2
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 1.2e-73 280.8 222 67.6
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 1.2e-73 280.8 221 61.5
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 4.8e-70 268.9 267 56.9
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 1.6e-68 263.8 213 64.8
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 5.9e-68 261.9 226 61.1
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 1.3e-62 244.2 260 48.1
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 2.8e-62 243.0 255 48.6
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 2.5e-58 229.9 166 66.9
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 1.6e-57 227.3 401 38.7
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 1.6e-57 227.3 192 65.1
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 8.9e-56 221.5 238 47.9
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 1.1e-53 214.5 220 55.9
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 3.5e-52 209.5 231 45.5
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 1.9e-50 203.8 256 47.7
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 1.8e-48 197.2 131 73.3
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 6.8e-48 195.3 136 70.6
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 2.7e-44 183.3 172 51.7
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 4.6e-36 156.0 123 63.4
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 2.4e-29 133.7 118 55.1
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 7.1e-21 105.5 79 68.4
Os04g0665800 Oryza sativa ssp. japonica HOM05D004474 ORTHO05D005538 4.6e-20 102.8 67 77.6
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 3.0e-19 100.1 107 48.6
Lsat_1_v5_gn_8_115961 Lactuca sativa HOM05D004474 ORTHO05D005538 1.9e-13 80.9 69 58.0
Hund01181 Selenicereus undatus HOM05D009125 ORTHO05D000110 2.4e-13 80.5 70 52.9
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 1.2e-12 78.2 188 34.0
Oeu054954.1 Olea europaea HOM05D004474 ORTHO05D005538 4.3e-10 69.7 52 65.4
PGSC0003DMG400028004 Solanum tuberosum HOM05D004474 ORTHO05D005538 1.3e-09 68.2 72 51.4
HPP92_002972 Vanilla planifolia HOM05D004474 ORTHO05D005538 9.0e-08 62.0 50 64.0
C01p35130 Brassica napus HOM05D027121 ORTHO05D039971 1.5e-07 61.2 106 35.8
BcaC09g49569 Brassica carinata HOM05D027121 ORTHO05D094000 4.5e-07 59.7 106 34.9


User provided reference genes

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