Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G40480 Arabidopsis lyrata HOM05D007306 ORTHO05D009112 7.4e-66 253.8 137 100.0
AT2G42110 Arabidopsis thaliana HOM05D007306 ORTHO05D009112 3.9e-59 231.5 138 91.3
CARHR137170 Cardamine hirsuta HOM05D007306 ORTHO05D009112 1.4e-53 213.0 138 88.4
Sp4g24320 Schrenkiella parvula HOM05D007306 ORTHO05D009112 1.6e-49 199.5 140 82.9
Thhalv10017403m.g Eutrema salsugineum HOM05D007306 ORTHO05D009112 2.8e-49 198.7 139 82.0
BcaC02g12458 Brassica carinata HOM05D007306 ORTHO05D009112 1.1e-48 196.8 141 79.4
BcaC02g12459 Brassica carinata HOM05D007306 ORTHO05D009112 1.1e-48 196.8 141 79.4
BcaNung04408 Brassica carinata HOM05D007306 ORTHO05D009112 1.1e-48 196.8 142 79.6
C04p03260 Brassica napus HOM05D007306 ORTHO05D009112 1.1e-48 196.8 141 79.4
BolC4t21964H Brassica oleracea HOM05D007306 ORTHO05D009112 1.1e-48 196.8 141 79.4
A05p02730 Brassica napus HOM05D007306 ORTHO05D009112 1.4e-48 196.4 142 79.6
BraA05t19265Z Brassica rapa HOM05D007306 ORTHO05D009112 1.4e-48 196.4 142 79.6
Aa31LG1G24110 Aethionema arabicum HOM05D007306 ORTHO05D009112 2.5e-45 185.7 143 74.1
Carub.0004s2445 Capsella rubella HOM05D007306 ORTHO05D009112 6.1e-44 181.0 149 71.8
THA.LOC104802563 Tarenaya hassleriana HOM05D007306 ORTHO05D009112 1.1e-26 123.6 136 54.4
PGR004G2053 Punica granatum HOM05D007306 ORTHO05D009112 1.4e-24 116.7 139 54.0
Atru.chr8.1112 Acer truncatum HOM05D007306 ORTHO05D009112 1.6e-23 113.2 144 51.4
Nn2g15686 Nelumbo nucifera HOM05D007306 ORTHO05D009112 1.6e-23 113.2 134 54.5
TAR623G0307 Trochodendron aralioides HOM05D007306 ORTHO05D009112 1.6e-23 113.2 136 53.7
CiPaw.09G030300 Carya illinoinensis HOM05D007306 ORTHO05D009112 2.6e-23 112.5 142 51.4
Thecc.05G171400 Theobroma cacao HOM05D007306 ORTHO05D009112 3.5e-23 112.1 145 51.7
Aqoxy1G00127 Aquilegia oxysepala HOM05D007306 ORTHO05D009112 5.9e-23 111.3 145 49.0
Gohir.A01G191300 Gossypium hirsutum HOM05D007306 ORTHO05D009112 1.7e-22 109.8 147 53.1
Gorai.002G224300 Gossypium raimondii HOM05D007306 ORTHO05D009112 1.7e-22 109.8 147 53.1
QL07p023738 Quercus lobata HOM05D007306 ORTHO05D009112 1.7e-22 109.8 143 51.7
Gohir.D01G178600 Gossypium hirsutum HOM05D007306 ORTHO05D009112 3.8e-22 108.6 147 53.1
CANSAT64G1677 Cannabis sativa HOM05D007306 ORTHO05D009112 5.0e-22 108.2 138 52.2
Cpa.g.sc85.66 Carica papaya HOM05D007306 ORTHO05D009112 5.0e-22 108.2 143 53.1
Cfa020165 Carpinus fangiana HOM05D007306 ORTHO05D009112 6.5e-22 107.8 142 51.4
TWI74G1393 Tripterygium wilfordii HOM05D007306 ORTHO05D009112 6.5e-22 107.8 133 57.9
Duzib093G0428 Durio zibethinus HOM05D007306 ORTHO05D009112 8.5e-22 107.5 144 52.1
FAN14G0362 Fragaria x ananassa HOM05D007306 ORTHO05D009112 1.1e-21 107.1 149 48.3
RcHm_v2.0_Chr3g0479681 Rosa chinensis HOM05D007306 ORTHO05D009112 1.1e-21 107.1 151 49.7
FAN09G2453 Fragaria x ananassa HOM05D007306 ORTHO05D009112 2.5e-21 105.9 145 50.3
COL.COLO4_33982 Corchorus olitorius HOM05D007306 ORTHO05D009112 4.2e-21 105.1 151 48.3
FAN05G3567 Fragaria x ananassa HOM05D007306 ORTHO05D009112 4.2e-21 105.1 147 47.6
Potri.006G192500 Populus trichocarpa HOM05D007306 ORTHO05D009112 4.2e-21 105.1 154 47.4
FvH4_6g22320 Fragaria vesca HOM05D007306 ORTHO05D009112 5.5e-21 104.8 135 50.4
Lalb_Chr18g0047871 Lupinus albus HOM05D007306 ORTHO05D009112 7.2e-21 104.4 141 49.6
Lj1g0014955 Lotus japonicus HOM05D007306 ORTHO05D009112 9.4e-21 104.0 127 55.1
Ciclev10013031m.g Citrus clementina HOM05D007306 ORTHO05D009112 1.2e-20 103.6 142 53.5
MD12G1057100 Malus domestica HOM05D007306 ORTHO05D009112 1.6e-20 103.2 151 48.3
Manes.08G044500 Manihot esculenta HOM05D007306 ORTHO05D009112 3.6e-20 102.1 158 45.6
arahy.Tifrunner.gnm1.ann1.I9AM74 Arachis hypogaea HOM05D007306 ORTHO05D009112 4.7e-20 101.7 132 49.2
PSO339G5155 Papaver somniferum HOM05D007306 ORTHO05D009112 4.7e-20 101.7 137 50.4
PSO384G4645 Papaver somniferum HOM05D007306 ORTHO05D009112 4.7e-20 101.7 137 49.6
FAN02G3291 Fragaria x ananassa HOM05D007306 ORTHO05D009112 6.1e-20 101.3 143 46.9
Hma1.2p1_0386F.1_g141880 Hydrangea macrophylla HOM05D007306 ORTHO05D009112 1.0e-19 100.5 134 49.3
Phvul.007G259800 Phaseolus vulgaris HOM05D007306 ORTHO05D009112 1.4e-19 100.1 130 46.9
TPR.G22157 Trifolium pratense HOM05D007306 ORTHO05D009112 1.4e-19 100.1 126 52.4
Psat3g068560 Pisum sativum HOM05D007306 ORTHO05D009112 2.3e-19 99.4 127 48.8
Potri.016G045700 Populus trichocarpa HOM05D007306 ORTHO05D009112 4.0e-19 98.6 150 48.0
Prupe.7G077000 Prunus persica HOM05D007306 ORTHO05D009112 4.0e-19 98.6 139 48.2
Glyma.09G111500 Glycine max HOM05D007306 ORTHO05D009112 5.2e-19 98.2 125 47.2
Dinv14300 Davidia involucrata HOM05D007306 ORTHO05D009112 6.8e-19 97.8 137 45.3
Peaxi162Scf00258g00720 Petunia axillaris HOM05D007306 ORTHO05D009112 6.8e-19 97.8 131 48.1
arahy.Tifrunner.gnm1.ann1.T0JWFY Arachis hypogaea HOM05D007306 ORTHO05D009112 8.8e-19 97.4 132 47.7
Glyma.03G144700 Glycine max HOM05D007306 ORTHO05D009112 1.2e-18 97.1 139 48.2
vmacro07907 Vaccinium macrocarpon HOM05D007306 ORTHO05D009112 2.0e-18 96.3 131 47.3
Rhsim03G0005900 Rhododendron simsii HOM05D007306 ORTHO05D009112 3.4e-18 95.5 129 47.3
MD14G1057700 Malus domestica HOM05D007306 ORTHO05D009112 4.4e-18 95.1 138 47.1
Actinidia32393 Actinidia chinensis HOM05D007306 ORTHO05D009112 7.5e-18 94.4 133 45.9
Solyc03g120950.3 Solanum lycopersicum HOM05D007306 ORTHO05D009112 1.3e-17 93.6 121 45.5
CiPaw.10G026400 Carya illinoinensis HOM05D007306 ORTHO05D009112 1.7e-17 93.2 145 46.2
Nitab4.5_0001137g0060 Nicotiana tabacum HOM05D007306 ORTHO05D009112 2.2e-17 92.8 134 46.3
Sed0004413 Sechium edule HOM05D007306 ORTHO05D009112 2.2e-17 92.8 141 41.8
Sopen03g039780 Solanum pennellii HOM05D007306 ORTHO05D009112 3.7e-17 92.0 121 44.6
VMungo1383G3094 Vigna mungo HOM05D007306 ORTHO05D009112 6.3e-17 91.3 124 49.2
Manes.09G035400 Manihot esculenta HOM05D007306 ORTHO05D009112 8.3e-17 90.9 125 50.4
Nitab4.5_0007619g0010 Nicotiana tabacum HOM05D007306 ORTHO05D009112 1.8e-16 89.7 138 42.8
Migut.J01836 Erythranthe guttata HOM05D007306 ORTHO05D009112 4.1e-16 88.6 136 44.1
HanXRQChr13g0390881 Helianthus annuus HOM05D007306 ORTHO05D009112 4.1e-16 88.6 134 45.5
MSTRG.19909 Avicennia marina HOM05D007306 ORTHO05D009112 7.0e-16 87.8 134 42.5
Phvul.001G142300 Phaseolus vulgaris HOM05D007306 ORTHO05D009112 7.0e-16 87.8 125 48.8
MBI06_g29488_MAGBIO Magnolia biondii HOM05D007306 ORTHO05D009112 9.1e-16 87.4 129 47.3
PGSC0003DMG400002614 Solanum tuberosum HOM05D007306 ORTHO05D009112 9.1e-16 87.4 121 43.8
Duzib106G0602 Durio zibethinus HOM05D007306 ORTHO05D009112 1.6e-15 86.7 142 43.7
VMungo0720G2523 Vigna mungo HOM05D007306 ORTHO05D009112 1.6e-15 86.7 130 42.3
CAN.G1143.4 Capsicum annuum HOM05D007306 ORTHO05D009112 2.0e-15 86.3 122 42.6
Medtr7g093220 Medicago truncatula HOM05D007306 ORTHO05D009112 2.0e-15 86.3 124 48.4
Actinidia22036 Actinidia chinensis HOM05D007306 ORTHO05D009112 3.5e-15 85.5 134 47.0
Hund24792 Selenicereus undatus HOM05D007306 ORTHO05D009112 4.5e-15 85.1 155 43.2
Cc06_g15870 Coffea canephora HOM05D007306 ORTHO05D009112 1.0e-14 84.0 146 41.8
SalBow6G0438 Salvia bowleyana HOM05D007306 ORTHO05D009112 1.3e-14 83.6 128 43.8
SalBow6G2293 Salvia bowleyana HOM05D007306 ORTHO05D009112 1.3e-14 83.6 128 43.8
DCAR_017009 Daucus carota HOM05D004472 ORTHO05D007169 1.7e-14 83.2 133 43.6
Glyma.19G147700 Glycine max HOM05D007306 ORTHO05D009112 5.0e-14 81.6 122 47.5
SGA_v2.0_scaffold69G23062 Striga asiatica HOM05D007306 ORTHO05D009112 1.5e-13 80.1 127 40.2
Sabra16G0049700 Salix brachista HOM05D007306 ORTHO05D009112 2.5e-13 79.3 105 49.5
AUR62012035 Chenopodium quinoa HOM05D007306 ORTHO05D009112 1.2e-12 77.0 139 42.4
CsaV3_3G038820 Cucumis sativus L. HOM05D007306 ORTHO05D009112 2.1e-12 76.3 133 40.6
Lsat_1_v5_gn_5_163480 Lactuca sativa HOM05D007306 ORTHO05D009112 1.0e-11 73.9 152 40.1
ECA248G3448 Erigeron canadensis HOM05D007306 ORTHO05D009112 3.0e-11 72.4 144 38.2
MELO3C009626.2 Cucumis melo HOM05D007306 ORTHO05D009112 4.0e-11 72.0 131 38.2
ClCG10G017530 Citrullus lanatus HOM05D007306 ORTHO05D009112 8.8e-11 70.9 128 39.8
Oeu063786.1 Olea europaea HOM05D007306 ORTHO05D009112 8.8e-11 70.9 117 41.0
Ah.04g152480 Amaranthus hybridus HOM05D007306 ORTHO05D009112 1.5e-10 70.1 169 36.1
AUR62015369 Chenopodium quinoa HOM05D007306 ORTHO05D009112 1.7e-09 66.6 156 36.5
GSVIVG01033497001 Vitis vinifera HOM05D007306 ORTHO05D009112 2.4e-08 62.8 133 36.8
EL10Ac3g06917 Beta vulgaris HOM05D007306 ORTHO05D009112 9.1e-08 60.8 168 32.1
CDE02G0820 Ceratophyllum demersum HOM05D007306 ORTHO05D009112 3.5e-07 58.9 133 38.3
Haze_19991 Corylus avellana HOM05D000267 ORTHO05D000298 4.5e-07 58.5 34 70.6
Sed0003989 Sechium edule HOM05D007306 ORTHO05D009112 4.5e-07 58.5 70 42.9
ATR0807G086 Amborella trichopoda HOM05D007306 ORTHO05D009112 1.7e-06 56.6 127 36.2
Os03g0128300 Oryza sativa ssp. japonica HOM05D007306 ORTHO05D009112 2.3e-06 56.2 150 33.3
Sc19g0007100 Simmondsia chinensis HOM05D007306 ORTHO05D009112 3.8e-06 55.5 113 37.2


User provided reference genes

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