Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G40360 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 1.1e-39 166.0 73 100.0
AT2G42000 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 6.3e-32 140.2 71 87.3
AL4G13130 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 1.7e-29 132.1 69 84.1
AT2G23240 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 3.8e-29 131.0 72 83.3
Thhalv10000588m.g Eutrema salsugineum HOM05D007709 ORTHO05D009577 8.5e-29 129.8 70 78.6
Carub.0004s2433 Capsella rubella HOM05D007709 ORTHO05D009577 1.1e-28 129.4 68 83.8
Carub.0004s0246 Capsella rubella HOM05D007709 ORTHO05D009577 4.2e-28 127.5 72 79.2
Sp4g00020 Schrenkiella parvula HOM05D007709 ORTHO05D009577 1.0e-26 122.9 69 75.4
BcaC01g04855 Brassica carinata HOM05D007709 ORTHO05D009577 2.3e-26 121.7 71 76.1
C03p33100 Brassica napus HOM05D007709 ORTHO05D009577 2.3e-26 121.7 71 76.1
BolC3t15636H Brassica oleracea HOM05D007709 ORTHO05D009577 2.3e-26 121.7 71 76.1
A03p27450 Brassica napus HOM05D007709 ORTHO05D009577 1.5e-25 119.0 71 74.6
BraA03t11957Z Brassica rapa HOM05D007709 ORTHO05D009577 1.5e-25 119.0 71 74.6
BcaB01g02955 Brassica carinata HOM05D007709 ORTHO05D009577 2.0e-25 118.6 71 74.6
CARHR292840 Cardamine hirsuta HOM05D007709 ORTHO05D009577 4.5e-22 107.5 64 73.4
THA.LOC104807798 Tarenaya hassleriana HOM05D007709 ORTHO05D009577 1.3e-21 105.9 63 71.4
Migut.N01357 Erythranthe guttata HOM05D007709 ORTHO05D009577 2.1e-19 98.6 63 69.8
CAN.G1725.3 Capsicum annuum HOM05D007709 ORTHO05D009577 1.4e-18 95.9 71 62.0
Peaxi162Scf00362g00133 Petunia axillaris HOM05D007709 ORTHO05D009577 1.8e-18 95.5 66 60.6
Aqoxy6G01622 Aquilegia oxysepala HOM05D007709 ORTHO05D009577 5.2e-18 94.0 68 61.8
PGR142G3111 Punica granatum HOM05D007709 ORTHO05D009577 4.4e-17 90.9 64 56.2
Sc14g0002460 Simmondsia chinensis HOM05D007709 ORTHO05D009577 5.7e-17 90.5 63 63.5
Prupe.8G179200 Prunus persica HOM05D007709 ORTHO05D009577 9.8e-17 89.7 70 57.1
Ah.01g017550 Amaranthus hybridus HOM05D007709 ORTHO05D009577 3.7e-16 87.8 63 65.1
COL.COLO4_34305 Corchorus olitorius HOM05D007709 ORTHO05D009577 4.9e-16 87.4 61 60.7
RcHm_v2.0_Chr6g0280851 Rosa chinensis HOM05D007709 ORTHO05D009577 4.9e-16 87.4 67 62.7
arahy.Tifrunner.gnm1.ann1.9G47NZ Arachis hypogaea HOM05D007709 ORTHO05D009577 6.3e-16 87.0 63 61.9
Atru.chr5.3536 Acer truncatum HOM05D007709 ORTHO05D009577 1.4e-15 85.9 55 63.6
Manes.11G110300 Manihot esculenta HOM05D007709 ORTHO05D009577 1.4e-15 85.9 62 61.3
arahy.Tifrunner.gnm1.ann1.0QS5M4 Arachis hypogaea HOM05D007709 ORTHO05D009577 2.4e-15 85.1 50 64.0
Cfa005362 Carpinus fangiana HOM05D007709 ORTHO05D009577 2.4e-15 85.1 65 56.9
Nitab4.5_0000783g0120 Nicotiana tabacum HOM05D007709 ORTHO05D009577 3.2e-15 84.7 65 55.4
Haze_02011 Corylus avellana HOM05D007709 ORTHO05D009577 5.4e-15 84.0 70 55.7
Cfa005363 Carpinus fangiana HOM05D007709 ORTHO05D009577 9.2e-15 83.2 68 51.5
Nn5g30992 Nelumbo nucifera HOM05D007709 ORTHO05D009577 9.2e-15 83.2 61 59.0
Thecc.02G145500 Theobroma cacao HOM05D007709 ORTHO05D009577 9.2e-15 83.2 54 63.0
Cpa.g.sc60.30 Carica papaya HOM05D007709 ORTHO05D009577 2.0e-14 82.0 63 57.1
Ciclev10029706m.g Citrus clementina HOM05D007709 ORTHO05D009577 2.0e-14 82.0 62 59.7
Eucgr.I01530 Eucalyptus grandis HOM05D007709 ORTHO05D009577 2.0e-14 82.0 57 59.6
QL03p016612 Quercus lobata HOM05D007709 ORTHO05D009577 2.7e-14 81.6 62 53.2
QL03p016617 Quercus lobata HOM05D007709 ORTHO05D009577 2.7e-14 81.6 62 53.2
QL11p056189 Quercus lobata HOM05D007709 ORTHO05D009577 2.7e-14 81.6 62 53.2
QL11p056219 Quercus lobata HOM05D007709 ORTHO05D009577 2.7e-14 81.6 62 53.2
QL11p056180 Quercus lobata HOM05D007709 ORTHO05D009577 3.5e-14 81.3 62 53.2
TWI31G1411 Tripterygium wilfordii HOM05D007709 ORTHO05D009577 3.5e-14 81.3 59 59.3
MELO3C013494.2 Cucumis melo HOM05D007709 ORTHO05D009577 1.0e-13 79.7 61 54.1
HanXRQChr16g0501351 Helianthus annuus HOM05D007709 ORTHO05D009577 1.3e-13 79.3 62 58.1
PSO541G6469 Papaver somniferum HOM05D007709 ORTHO05D009577 1.3e-13 79.3 59 61.0
Glyma.18G157800 Glycine max HOM05D007709 ORTHO05D009577 2.3e-13 78.6 69 52.2
DCAR_026620 Daucus carota HOM05D007709 ORTHO05D009577 3.9e-13 77.8 52 59.6
Gohir.A04G112024 Gossypium hirsutum HOM05D007709 ORTHO05D009577 5.0e-13 77.4 47 68.1
Gohir.D04G152500 Gossypium hirsutum HOM05D007709 ORTHO05D009577 5.0e-13 77.4 47 68.1
Gorai.012G139300 Gossypium raimondii HOM05D007709 ORTHO05D009577 5.0e-13 77.4 47 68.1
Lj3g0026575 Lotus japonicus HOM05D007709 ORTHO05D009577 1.1e-12 76.3 63 60.3
Thecc.02G145600 Theobroma cacao HOM05D007709 ORTHO05D009577 1.1e-12 76.3 61 55.7
Sed0006301 Sechium edule HOM05D007709 ORTHO05D009577 1.5e-12 75.9 61 55.7
TPR.G29157 Trifolium pratense HOM05D007709 ORTHO05D009577 1.5e-12 75.9 67 49.3
Gorai.002G013700 Gossypium raimondii HOM05D007709 ORTHO05D009577 1.9e-12 75.5 52 55.8
CANSAT25G2121 Cannabis sativa HOM05D007709 ORTHO05D009577 4.3e-12 74.3 69 49.3
QL03p016621 Quercus lobata HOM05D007709 ORTHO05D009577 5.6e-12 73.9 59 50.8
QL11p056199 Quercus lobata HOM05D007709 ORTHO05D009577 5.6e-12 73.9 59 50.8
Os10g0542100 Oryza sativa ssp. japonica HOM05D007709 ORTHO05D009577 9.5e-12 73.2 54 53.7
Medtr8g012330 Medicago truncatula HOM05D001671 ORTHO05D001844 1.2e-11 72.8 61 55.7
CiPaw.05G092600 Carya illinoinensis HOM05D007709 ORTHO05D009577 1.6e-11 72.4 73 45.2
HPP92_022159 Vanilla planifolia HOM05D007709 ORTHO05D009577 1.6e-11 72.4 52 53.8
Cc04_g09140 Coffea canephora HOM05D007709 ORTHO05D009577 2.8e-11 71.6 57 56.1
MD05G1135300 Malus domestica HOM05D007709 ORTHO05D009577 3.6e-11 71.2 65 52.3
Psat3g150320 Pisum sativum HOM05D007709 ORTHO05D009577 4.7e-11 70.9 56 57.1
CSS0014347 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 8.0e-11 70.1 63 57.1
Rhsim05G0047200 Rhododendron simsii HOM05D007709 ORTHO05D009577 5.2e-10 67.4 75 44.0
DCAR_026621 Daucus carota HOM05D000628 ORTHO05D009577 6.8e-10 67.0 46 58.7
Haze_22002 Corylus avellana HOM05D022555 ORTHO05D009577 1.2e-09 66.2 61 50.8
Eucgr.G00244 Eucalyptus grandis HOM05D007709 ORTHO05D009577 3.4e-09 64.7 59 49.2
Lalb_Chr07g0194411 Lupinus albus HOM05D007709 ORTHO05D009577 3.4e-09 64.7 62 46.8
Potri.009G167700 Populus trichocarpa HOM05D007709 ORTHO05D009577 3.4e-09 64.7 66 53.0
Gohir.D01G011700 Gossypium hirsutum HOM05D007709 ORTHO05D009577 4.4e-09 64.3 45 57.8
Sopen01g054290 Solanum pennellii HOM05D007709 ORTHO05D009577 7.5e-09 63.5 62 53.2
CSS0015820 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 1.1e-07 59.7 63 52.4
ClCG02G010380 Citrullus lanatus HOM05D007709 ORTHO05D009577 1.4e-07 59.3 72 40.3
SalBow5G1409 Salvia bowleyana HOM05D007709 ORTHO05D009577 3.2e-07 58.2 69 44.9
SalBow5G2601 Salvia bowleyana HOM05D007709 ORTHO05D009577 3.2e-07 58.2 69 44.9
CSS0018079 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 9.2e-07 56.6 68 45.6
CSS0032875 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 9.2e-07 56.6 68 45.6
FAN27G0823 Fragaria x ananassa HOM05D007709 ORTHO05D009577 1.2e-06 56.2 51 52.9
FAN15G1429 Fragaria x ananassa HOM05D007709 ORTHO05D009577 2.7e-06 55.1 67 46.3
FAN24G0243 Fragaria x ananassa HOM05D007709 ORTHO05D009577 2.7e-06 55.1 67 46.3
FvH4_2g16730 Fragaria vesca HOM05D007709 ORTHO05D009577 4.6e-06 54.3 63 47.6
Medtr7g053460 Medicago truncatula HOM05D007709 ORTHO05D009577 6.0e-06 53.9 62 45.2
SMO358G0048 Selaginella moellendorffii HOM05D007709 ORTHO05D009577 6.0e-06 53.9 52 40.4


User provided reference genes

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