Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G40310 Arabidopsis lyrata HOM05D006815 ORTHO05D008536 3.4e-144 515.0 264 100.0
AT2G41950 Arabidopsis thaliana HOM05D006815 ORTHO05D008536 2.1e-133 479.2 267 92.9
Carub.0004s2428 Capsella rubella HOM05D006815 ORTHO05D008536 3.2e-126 455.3 267 87.6
Sp4g24220 Schrenkiella parvula HOM05D006815 ORTHO05D008536 8.5e-119 430.6 267 86.1
Thhalv10017089m.g Eutrema salsugineum HOM05D006815 ORTHO05D008536 1.1e-118 430.3 267 86.1
BcaC02g12449 Brassica carinata HOM05D006815 ORTHO05D008536 8.5e-111 404.1 267 80.9
C04p03160 Brassica napus HOM05D006815 ORTHO05D008536 8.5e-111 404.1 267 80.9
BolC4t21956H Brassica oleracea HOM05D006815 ORTHO05D008536 8.5e-111 404.1 267 80.9
BraA05t19258Z Brassica rapa HOM05D006815 ORTHO05D008536 2.7e-109 399.1 269 80.3
A05p02650 Brassica napus HOM05D006815 ORTHO05D008536 3.6e-109 398.7 269 80.3
Aa31LG1G24180 Aethionema arabicum HOM05D006815 ORTHO05D008536 1.8e-108 396.4 261 79.7
CARHR137070 Cardamine hirsuta HOM05D006815 ORTHO05D008536 3.1e-89 332.4 201 86.1
THA.LOC104824483 Tarenaya hassleriana HOM05D006815 ORTHO05D008536 2.1e-85 319.7 271 66.8
Ciclev10012299m.g Citrus clementina HOM05D006815 ORTHO05D008536 2.2e-74 283.1 213 67.6
Gohir.D01G124800 Gossypium hirsutum HOM05D006815 ORTHO05D008536 8.3e-74 281.2 267 57.7
Duzib106G1458 Durio zibethinus HOM05D006815 ORTHO05D008536 3.2e-73 279.3 273 55.7
Gohir.A01G137200 Gossypium hirsutum HOM05D006815 ORTHO05D008536 3.2e-73 279.3 267 57.7
COL.COLO4_29358 Corchorus olitorius HOM05D006815 ORTHO05D008536 5.4e-73 278.5 268 57.5
Gorai.002G155400 Gossypium raimondii HOM05D006815 ORTHO05D008536 5.4e-73 278.5 267 57.3
Thecc.05G174900 Theobroma cacao HOM05D006815 ORTHO05D008536 5.9e-72 275.0 274 57.3
Cpa.g.sc9.26 Carica papaya HOM05D006815 ORTHO05D008536 1.3e-71 273.9 198 68.7
Prupe.7G081100 Prunus persica HOM05D006815 ORTHO05D008536 1.9e-70 270.0 228 61.8
Lj2C363G3 Lonicera japonica HOM05D006815 ORTHO05D008536 5.6e-70 268.5 205 65.4
TAR369G0232 Trochodendron aralioides HOM05D006815 ORTHO05D008536 9.5e-70 267.7 221 61.1
MELO3C009608.2 Cucumis melo HOM05D006815 ORTHO05D008536 1.2e-69 267.3 269 55.8
Atru.chr8.1155 Acer truncatum HOM05D006815 ORTHO05D008536 1.6e-69 266.9 201 67.2
Potri.006G194600 Populus trichocarpa HOM05D006815 ORTHO05D008536 1.6e-69 266.9 270 55.9
Sabra06G0149300 Salix brachista HOM05D006815 ORTHO05D008536 1.6e-69 266.9 270 55.6
CsaV3_3G038620 Cucumis sativus L. HOM05D006815 ORTHO05D008536 4.7e-69 265.4 268 55.2
Dinv24040 Davidia involucrata HOM05D006815 ORTHO05D008536 6.2e-69 265.0 271 55.4
Manes.08G042600 Manihot esculenta HOM05D006815 ORTHO05D008536 1.4e-68 263.8 271 56.8
PGSC0003DMG400001108 Solanum tuberosum HOM05D006815 ORTHO05D008536 4.0e-68 262.3 212 60.8
CiPaw.09G028400 Carya illinoinensis HOM05D006815 ORTHO05D008536 5.2e-68 261.9 270 53.7
MD14G1054000 Malus domestica HOM05D006815 ORTHO05D008536 6.8e-68 261.5 240 60.0
Actinidia22067 Actinidia chinensis HOM05D006815 ORTHO05D008536 1.2e-67 260.8 280 53.2
AUR62015334 Chenopodium quinoa HOM05D006815 ORTHO05D008536 1.2e-67 260.8 266 54.1
Sopen03g011500 Solanum pennellii HOM05D006815 ORTHO05D008536 1.2e-67 260.8 274 52.6
CANSAT64G2825 Cannabis sativa HOM05D006815 ORTHO05D008536 1.5e-67 260.4 228 58.8
Peaxi162Scf00463g00417 Petunia axillaris HOM05D006815 ORTHO05D008536 2.0e-67 260.0 225 58.7
RcHm_v2.0_Chr3g0479231 Rosa chinensis HOM05D006815 ORTHO05D008536 2.0e-67 260.0 274 56.2
Cfa020143 Carpinus fangiana HOM05D006815 ORTHO05D008536 4.4e-67 258.8 270 54.1
Eucgr.A02470 Eucalyptus grandis HOM05D006815 ORTHO05D008536 4.4e-67 258.8 235 57.4
Solyc03g053020.4 Solanum lycopersicum HOM05D006815 ORTHO05D008536 7.5e-67 258.1 277 52.3
AUR62012005 Chenopodium quinoa HOM05D006815 ORTHO05D008536 9.8e-67 257.7 269 55.4
Haze_20020 Corylus avellana HOM05D006815 ORTHO05D008536 9.8e-67 257.7 270 54.4
Haze_20023 Corylus avellana HOM05D006815 ORTHO05D008536 9.8e-67 257.7 270 54.4
ClCG10G017680 Citrullus lanatus HOM05D006815 ORTHO05D008536 2.2e-66 256.5 213 60.6
Sed0026757 Sechium edule HOM05D006815 ORTHO05D008536 2.2e-66 256.5 210 61.0
CAN.G1314.3 Capsicum annuum HOM05D006815 ORTHO05D008536 2.9e-66 256.1 219 58.9
TWI53G1298 Tripterygium wilfordii HOM05D006815 ORTHO05D008536 3.7e-66 255.8 267 54.3
EL10Ac3g06884 Beta vulgaris HOM05D006815 ORTHO05D008536 4.9e-66 255.4 269 50.9
PGR004G0977 Punica granatum HOM05D006815 ORTHO05D008536 6.4e-66 255.0 264 56.4
FvH4_6g21880 Fragaria vesca HOM05D006815 ORTHO05D008536 8.3e-66 254.6 197 63.5
FAN14G3951 Fragaria x ananassa HOM05D006815 ORTHO05D008536 8.3e-66 254.6 197 63.5
Rhsim03G0035800 Rhododendron simsii HOM05D006815 ORTHO05D008536 8.3e-66 254.6 211 60.2
FAN09G4209 Fragaria x ananassa HOM05D006815 ORTHO05D008536 3.2e-65 252.7 198 63.1
HanXRQChr01g0024541 Helianthus annuus HOM05D006815 ORTHO05D008536 3.2e-65 252.7 252 54.0
ECA248G0678 Erigeron canadensis HOM05D006815 ORTHO05D008536 9.2e-65 251.1 243 55.1
FAN02G2829 Fragaria x ananassa HOM05D006815 ORTHO05D008536 9.2e-65 251.1 198 62.6
Cc06_g15510 Coffea canephora HOM05D006815 ORTHO05D008536 1.2e-64 250.8 212 59.4
GSVIVG01033467001 Vitis vinifera HOM05D006815 ORTHO05D008536 4.6e-64 248.8 185 67.0
Migut.J01868 Erythranthe guttata HOM05D006815 ORTHO05D008536 1.0e-63 247.7 255 53.3
Lalb_Chr15g0079111 Lupinus albus HOM05D006815 ORTHO05D008536 1.0e-63 247.7 223 56.5
SGA_v2.0_scaffold57G20097 Striga asiatica HOM05D006815 ORTHO05D008536 1.0e-63 247.7 236 55.5
DCAR_013671 Daucus carota HOM05D006815 ORTHO05D008536 2.3e-63 246.5 243 53.9
Lsat_1_v5_gn_1_60941 Lactuca sativa HOM05D006815 ORTHO05D008536 5.0e-63 245.4 264 50.4
Nn2g15741 Nelumbo nucifera HOM05D006815 ORTHO05D008536 5.0e-63 245.4 260 55.0
Hund19213 Selenicereus undatus HOM05D006815 ORTHO05D008536 8.6e-63 244.6 273 50.2
QL07p024496 Quercus lobata HOM05D006815 ORTHO05D008536 1.1e-62 244.2 266 53.8
Aqoxy2G00089 Aquilegia oxysepala HOM05D006815 ORTHO05D008536 2.5e-62 243.0 265 52.5
PSO541G3114 Papaver somniferum HOM05D006815 ORTHO05D008536 7.3e-62 241.5 265 54.3
PSO675G7684 Papaver somniferum HOM05D006815 ORTHO05D008536 1.2e-61 240.7 265 54.0
Oeu035701.1 Olea europaea HOM05D006815 ORTHO05D008536 1.6e-61 240.4 203 59.6
CSS0043811 Camellia sinensis var. sinensis HOM05D006815 ORTHO05D008536 4.7e-61 238.8 200 61.0
MSTRG.6498 Avicennia marina HOM05D006815 ORTHO05D008536 8.1e-61 238.0 203 57.6
arahy.Tifrunner.gnm1.ann1.TZP9CN Arachis hypogaea HOM05D006815 ORTHO05D008536 2.3e-60 236.5 201 61.2
vmacro22625 Vaccinium macrocarpon HOM05D006815 ORTHO05D008536 2.3e-60 236.5 279 51.3
arahy.Tifrunner.gnm1.ann1.8HEC25 Arachis hypogaea HOM05D006815 ORTHO05D008536 5.2e-60 235.3 201 60.7
CSS0019995 Camellia sinensis var. sinensis HOM05D006815 ORTHO05D008536 5.2e-60 235.3 200 59.5
Nitab4.5_0000009g0210 Nicotiana tabacum HOM05D006815 ORTHO05D008536 2.0e-59 233.4 222 55.0
SalBow6G3515 Salvia bowleyana HOM05D006815 ORTHO05D008536 4.4e-59 232.3 209 55.5
arahy.Tifrunner.gnm1.ann1.G1RGZB Arachis hypogaea HOM05D006815 ORTHO05D008536 7.5e-59 231.5 201 60.2
Glyma.19G149900 Glycine max HOM05D006815 ORTHO05D008536 2.2e-58 229.9 244 51.6
Glyma.03G146600 Glycine max HOM05D006815 ORTHO05D008536 2.9e-58 229.6 199 58.8
Phvul.001G144400 Phaseolus vulgaris HOM05D006815 ORTHO05D008536 1.1e-57 227.6 199 58.3
VMungo1383G0507 Vigna mungo HOM05D006815 ORTHO05D008536 1.1e-57 227.6 199 57.8
Nitab4.5_0002339g0010 Nicotiana tabacum HOM05D006815 ORTHO05D008536 2.7e-56 223.0 222 53.6
unitig_37.g12377 Utricularia gibba HOM05D006815 ORTHO05D008536 5.1e-55 218.8 204 53.9
Lj1g0024455 Lotus japonicus HOM05D006815 ORTHO05D008536 9.5e-54 214.5 243 49.4
Medtr7g093640 Medicago truncatula HOM05D006815 ORTHO05D008536 1.6e-53 213.8 217 53.0
Psat3g067520 Pisum sativum HOM05D006815 ORTHO05D008536 3.6e-53 212.6 258 48.4
Ca_08540_v3 Cicer arietinum L. HOM05D006815 ORTHO05D008536 4.0e-52 209.1 259 46.7
TPR.G13363 Trifolium pratense HOM05D006815 ORTHO05D008536 1.2e-51 207.6 222 52.3
arahy.Tifrunner.gnm1.ann1.70NGGP Arachis hypogaea HOM05D006815 ORTHO05D008536 1.5e-51 207.2 188 58.0
ATR0598G218 Amborella trichopoda HOM05D006815 ORTHO05D008536 1.1e-49 201.1 266 48.1
MBI19_g17427_MAGBIO Magnolia biondii HOM05D006815 ORTHO05D008536 3.2e-49 199.5 267 44.2
CDE05G2500 Ceratophyllum demersum HOM05D006815 ORTHO05D008536 7.1e-49 198.4 236 46.6
Sc13g0002390 Simmondsia chinensis HOM05D006815 ORTHO05D008536 1.8e-44 183.7 206 53.9
MD12G1054600 Malus domestica HOM05D006815 ORTHO05D008536 3.4e-43 179.5 149 62.4
BcaC03g14280 Brassica carinata HOM05D006815 ORTHO05D008536 4.4e-43 179.1 193 57.0
arahy.Tifrunner.gnm1.ann1.13XKQP Arachis hypogaea HOM05D006815 ORTHO05D008536 1.9e-41 173.7 203 50.7
CAN.G274.29 Capsicum annuum HOM05D006815 ORTHO05D008536 2.4e-41 173.3 158 56.3
HPP92_023474 Vanilla planifolia HOM05D006815 ORTHO05D008536 4.2e-41 172.6 256 40.6
HPP92_023458 Vanilla planifolia HOM05D006815 ORTHO05D008536 9.3e-41 171.4 256 40.6
Os03g0226700 Oryza sativa ssp. japonica HOM05D006815 ORTHO05D008536 3.2e-33 146.4 233 40.3
CDE11G0339 Ceratophyllum demersum HOM05D006815 ORTHO05D008536 5.6e-30 135.6 175 45.7
SEGI_30907 Sequoiadendron giganteum HOM05D006815 ORTHO05D008536 2.0e-27 127.1 184 38.0
CARHR137080 Cardamine hirsuta HOM05D006815 ORTHO05D008536 1.1e-25 121.3 68 89.7
C02p16600 Brassica napus HOM05D006815 ORTHO05D008536 7.4e-22 108.6 69 82.6
BolC2t07761H Brassica oleracea HOM05D006815 ORTHO05D008536 2.1e-21 107.1 69 81.2
Pp3c12_7730 Physcomitrium patens HOM05D006815 ORTHO05D008536 5.3e-20 102.4 211 30.3
arahy.Tifrunner.gnm1.ann1.19RU7Q Arachis hypogaea HOM05D006815 ORTHO05D008536 4.2e-17 92.8 77 58.4
Mapoly0159s0012 Marchantia polymorpha HOM05D006815 ORTHO05D008536 5.5e-17 92.4 190 30.5
Zm00001eb009870 Zea mays HOM05D006815 ORTHO05D008536 9.3e-17 91.7 144 36.1
SEGI_06955 Sequoiadendron giganteum HOM05D006815 ORTHO05D008536 3.3e-14 83.2 123 36.6
Nn6g34990 Nelumbo nucifera HOM05D006815 ORTHO05D008536 1.2e-11 74.7 61 57.4


User provided reference genes

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