Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G40200 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 1.6e-112 409.8 281 100.0
AT2G41870 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 7.0e-87 324.7 281 87.9
Carub.0004s2418 Capsella rubella HOM05D004060 ORTHO05D004967 4.5e-86 322.0 285 87.4
A05p02610 Brassica napus HOM05D004060 ORTHO05D004967 1.4e-66 257.3 287 77.4
BraA05t19254Z Brassica rapa HOM05D004060 ORTHO05D004967 4.0e-66 255.8 287 77.0
C04p03110 Brassica napus HOM05D004060 ORTHO05D004967 5.7e-65 251.9 287 69.7
BolC4t21952H Brassica oleracea HOM05D004060 ORTHO05D004967 5.7e-65 251.9 287 69.7
Thhalv10017761m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 5.7e-65 251.9 290 77.2
CARHR136960 Cardamine hirsuta HOM05D004060 ORTHO05D004967 1.8e-63 246.9 285 67.0
BcaNung07195 Brassica carinata HOM05D004060 ORTHO05D004967 7.0e-63 245.0 285 76.5
Sp4g24140 Schrenkiella parvula HOM05D004060 ORTHO05D004967 4.1e-55 219.2 286 74.8
CARHR167760 Cardamine hirsuta HOM05D004060 ORTHO05D004967 1.1e-39 167.9 299 63.2
Carub.0005s2438 Capsella rubella HOM05D004060 ORTHO05D004967 9.2e-39 164.9 306 61.1
AL5G39120 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 5.1e-37 159.1 305 60.7
AT3G57540 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 1.9e-36 157.1 305 61.0
THA.LOC104824453 Tarenaya hassleriana HOM05D004060 ORTHO05D004967 2.8e-35 153.3 303 60.1
BcaC07g40371 Brassica carinata HOM05D004060 ORTHO05D004967 6.2e-35 152.1 306 58.5
C08p33070 Brassica napus HOM05D004060 ORTHO05D004967 6.2e-35 152.1 306 58.5
BolC8t50907H Brassica oleracea HOM05D004060 ORTHO05D004967 6.2e-35 152.1 306 58.5
A09p50400 Brassica napus HOM05D004060 ORTHO05D004967 1.1e-34 151.4 306 58.8
Sp5g05050 Schrenkiella parvula HOM05D004060 ORTHO05D004967 1.1e-34 151.4 302 59.3
Aa31LG10G12370 Aethionema arabicum HOM05D004060 ORTHO05D004967 4.0e-34 149.4 308 60.4
BraA09t40492Z Brassica rapa HOM05D004060 ORTHO05D004967 2.0e-33 147.1 305 58.0
Thhalv10006130m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 5.4e-31 139.0 313 58.5
Cpa.g.sc92.28 Carica papaya HOM05D004060 ORTHO05D004967 1.2e-30 137.9 289 48.4
BcaC07g40387 Brassica carinata HOM05D004060 ORTHO05D004967 1.0e-29 134.8 310 56.5
Duzib128G1686 Durio zibethinus HOM05D004060 ORTHO05D004967 1.3e-29 134.4 263 58.2
Gohir.A11G312000 Gossypium hirsutum HOM05D004060 ORTHO05D004967 1.3e-29 134.4 301 56.5
Ciclev10005594m.g Citrus clementina HOM05D004060 ORTHO05D004967 3.0e-29 133.3 290 59.7
CsaV3_3G039720 Cucumis sativus L. HOM05D004060 ORTHO05D004967 6.6e-29 132.1 285 56.5
Rhsim03G0018200 Rhododendron simsii HOM05D004060 ORTHO05D004967 1.1e-28 131.3 287 57.5
Potri.016G054400 Populus trichocarpa HOM05D004060 ORTHO05D004967 1.5e-28 131.0 283 57.6
Gohir.D11G328600 Gossypium hirsutum HOM05D004060 ORTHO05D004967 1.9e-28 130.6 270 59.6
Gorai.007G359900 Gossypium raimondii HOM05D004060 ORTHO05D004967 1.9e-28 130.6 270 59.6
Oeu064312.1 Olea europaea HOM05D004060 ORTHO05D004967 1.9e-28 130.6 277 47.3
Gohir.A11G312100 Gossypium hirsutum HOM05D004060 ORTHO05D004967 2.1e-27 127.1 268 59.3
Duzib106G1229 Durio zibethinus HOM05D004060 ORTHO05D004967 2.8e-27 126.7 290 59.3
ClCG10G016620 Citrullus lanatus HOM05D004060 ORTHO05D004967 3.6e-27 126.3 278 57.9
Thecc.05G159200 Theobroma cacao HOM05D004060 ORTHO05D004967 4.7e-27 125.9 287 56.8
Haze_19892 Corylus avellana HOM05D004060 ORTHO05D004967 6.2e-27 125.6 290 52.8
TWI53G1485 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 6.2e-27 125.6 273 59.0
CSS0022151 Camellia sinensis var. sinensis HOM05D004060 ORTHO05D004967 1.1e-26 124.8 278 57.6
Haze_19884 Corylus avellana HOM05D004060 ORTHO05D004967 1.1e-26 124.8 290 52.8
MELO3C009714.2 Cucumis melo HOM05D004060 ORTHO05D004967 1.4e-26 124.4 277 56.3
VMungo1383G2713 Vigna mungo HOM05D004060 ORTHO05D004967 2.4e-26 123.6 263 58.9
MSTRG.6438 Avicennia marina HOM05D004060 ORTHO05D004967 3.1e-26 123.2 276 56.2
Potri.006G053200 Populus trichocarpa HOM05D004060 ORTHO05D004967 5.2e-26 122.5 276 59.1
Actinidia09345 Actinidia chinensis HOM05D004060 ORTHO05D004967 1.2e-25 121.3 269 57.6
ECA248G2911 Erigeron canadensis HOM05D004060 ORTHO05D004967 1.2e-25 121.3 280 56.1
Cc06_g16910 Coffea canephora HOM05D004060 ORTHO05D004967 1.5e-25 120.9 277 57.0
Nitab4.5_0001509g0060 Nicotiana tabacum HOM05D004060 ORTHO05D004967 2.0e-25 120.6 282 57.8
PGSC0003DMG400023721 Solanum tuberosum HOM05D004060 ORTHO05D004967 2.0e-25 120.6 282 56.4
TPR.G21399 Trifolium pratense HOM05D004060 ORTHO05D004967 2.6e-25 120.2 277 55.6
Duzib093G0278 Durio zibethinus HOM05D004060 ORTHO05D004967 3.4e-25 119.8 201 46.3
COL.COLO4_28207 Corchorus olitorius HOM05D004060 ORTHO05D004967 4.4e-25 119.4 299 56.2
Nitab4.5_0000733g0190 Nicotiana tabacum HOM05D004060 ORTHO05D004967 5.8e-25 119.0 268 59.0
Psat3g079320 Pisum sativum HOM05D004060 ORTHO05D004967 5.8e-25 119.0 297 55.2
QL07p021067 Quercus lobata HOM05D004060 ORTHO05D004967 7.6e-25 118.6 280 53.9
BcaB02g07595 Brassica carinata HOM05D004060 ORTHO05D004967 9.9e-25 118.2 290 53.1
Hma1.2p1_0696F.1_g204640 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 9.9e-25 118.2 300 54.7
Nitab4.5_0001663g0020 Nicotiana tabacum HOM05D004060 ORTHO05D004967 9.9e-25 118.2 268 59.0
Oeu033785.1 Olea europaea HOM05D004060 ORTHO05D004967 9.9e-25 118.2 270 56.3
Atru.chr1.1058 Acer truncatum HOM05D004060 ORTHO05D004967 1.3e-24 117.9 186 45.7
vmacro22363 Vaccinium macrocarpon HOM05D004060 ORTHO05D004967 1.3e-24 117.9 286 53.8
HanXRQChr10g0300071 Helianthus annuus HOM05D004060 ORTHO05D004967 1.7e-24 117.5 267 57.7
Nitab4.5_0002841g0040 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.7e-24 117.5 282 56.7
Sabra06G0037600 Salix brachista HOM05D004060 ORTHO05D004967 1.7e-24 117.5 278 58.6
CAN.G128.15 Capsicum annuum HOM05D004060 ORTHO05D004967 2.2e-24 117.1 261 59.4
Phvul.001G135500 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 2.2e-24 117.1 194 44.8
FvH4_6g23510 Fragaria vesca HOM05D004060 ORTHO05D004967 4.9e-24 115.9 305 51.8
FAN14G3078 Fragaria x ananassa HOM05D004060 ORTHO05D004967 4.9e-24 115.9 305 51.8
FAN09G1680 Fragaria x ananassa HOM05D004060 ORTHO05D004967 8.4e-24 115.2 307 50.5
Lsat_1_v5_gn_5_162320 Lactuca sativa HOM05D004060 ORTHO05D004967 8.4e-24 115.2 274 55.8
TWI74G0684 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 1.1e-23 114.8 275 55.3
CANSAT80G2886 Cannabis sativa HOM05D004060 ORTHO05D004967 2.4e-23 113.6 278 56.1
FAN05G0004 Fragaria x ananassa HOM05D004060 ORTHO05D004967 2.4e-23 113.6 298 51.3
Manes.08G049300 Manihot esculenta HOM05D004060 ORTHO05D004967 3.2e-23 113.2 266 58.3
SalBow6G3128 Salvia bowleyana HOM05D004060 ORTHO05D004967 3.2e-23 113.2 263 57.8
Medtr7g091990 Medicago truncatula HOM05D004060 ORTHO05D004967 4.2e-23 112.8 281 54.1
Cfa016842 Carpinus fangiana HOM05D004060 ORTHO05D004967 5.4e-23 112.5 272 54.8
FAN02G3665 Fragaria x ananassa HOM05D004060 ORTHO05D004967 5.4e-23 112.5 296 51.0
CiPaw.10G032000 Carya illinoinensis HOM05D004060 ORTHO05D004967 7.1e-23 112.1 295 54.9
Manes.09G024700 Manihot esculenta HOM05D004060 ORTHO05D004967 7.1e-23 112.1 278 57.6
Peaxi162Scf01287g00012 Petunia axillaris HOM05D004060 ORTHO05D004967 7.1e-23 112.1 227 60.4
RcHm_v2.0_Chr3g0481501 Rosa chinensis HOM05D004060 ORTHO05D004967 9.3e-23 111.7 306 50.0
Lalb_Chr20g0110781 Lupinus albus HOM05D004060 ORTHO05D004967 1.6e-22 110.9 284 54.2
Nn7g36226 Nelumbo nucifera HOM05D004060 ORTHO05D004967 1.6e-22 110.9 202 43.6
TAR369G1158 Trochodendron aralioides HOM05D004060 ORTHO05D004967 1.6e-22 110.9 272 54.4
Dinv02133 Davidia involucrata HOM05D004060 ORTHO05D004967 2.7e-22 110.2 267 56.2
Medtr1g052560 Medicago truncatula HOM05D004060 ORTHO05D004967 3.5e-22 109.8 279 52.3
Eucgr.A02379 Eucalyptus grandis HOM05D004060 ORTHO05D004967 6.0e-22 109.0 226 61.1
MD14G1069500 Malus domestica HOM05D004060 ORTHO05D004967 6.0e-22 109.0 297 50.8
Nn2g15346 Nelumbo nucifera HOM05D004060 ORTHO05D004967 6.0e-22 109.0 187 41.2
Aqoxy1G00285 Aquilegia oxysepala HOM05D004060 ORTHO05D004967 7.8e-22 108.6 281 53.7
DCAR_013590 Daucus carota HOM05D004060 ORTHO05D004967 7.8e-22 108.6 261 56.7
Prupe.7G064800 Prunus persica HOM05D004060 ORTHO05D004967 7.8e-22 108.6 290 53.1
Sopen10g030840 Solanum pennellii HOM05D004060 ORTHO05D004967 7.8e-22 108.6 272 55.9
TAR057G0003 Trochodendron aralioides HOM05D004060 ORTHO05D004967 7.8e-22 108.6 272 53.7
arahy.Tifrunner.gnm1.ann1.L89JBM Arachis hypogaea HOM05D004060 ORTHO05D004967 1.3e-21 107.8 301 53.5
Ca_26888_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 1.7e-21 107.5 306 52.0
Migut.J01771 Erythranthe guttata HOM05D004060 ORTHO05D004967 1.7e-21 107.5 276 55.4
Lju124C36T16 Lonicera japonica HOM05D004060 ORTHO05D004967 1.7e-21 107.5 197 44.7
Actinidia24529 Actinidia chinensis HOM05D004060 ORTHO05D004967 2.3e-21 107.1 179 43.6
PGR004G1680 Punica granatum HOM05D004060 ORTHO05D004967 3.0e-21 106.7 265 55.1
TPR.G3730 Trifolium pratense HOM05D004060 ORTHO05D004967 3.0e-21 106.7 278 54.7
TWI77G1037 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 3.9e-21 106.3 268 56.7
Dinv02134 Davidia involucrata HOM05D004060 ORTHO05D004967 5.1e-21 105.9 271 52.8
Lalb_Chr25g0287361 Lupinus albus HOM05D004060 ORTHO05D004967 5.1e-21 105.9 276 52.2
Sed0004660 Sechium edule HOM05D004060 ORTHO05D004967 1.1e-20 104.8 266 57.9
Glyma.19G141100 Glycine max HOM05D004060 ORTHO05D004967 1.5e-20 104.4 270 55.6
CiPaw.09G036400 Carya illinoinensis HOM05D004060 ORTHO05D004967 1.9e-20 104.0 221 64.3
MSTRG.10823 Avicennia marina HOM05D004060 ORTHO05D004967 5.6e-20 102.4 277 41.5
MBI02_g05658_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 5.6e-20 102.4 273 44.3
Sc13g0001870 Simmondsia chinensis HOM05D004060 ORTHO05D004967 7.3e-20 102.1 276 54.3
Dinv18064 Davidia involucrata HOM05D004060 ORTHO05D004967 1.3e-19 101.3 206 39.8
TAR633G1984 Trochodendron aralioides HOM05D004060 ORTHO05D004967 1.3e-19 101.3 266 54.1
Phvul.007G253600 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 2.8e-19 100.1 297 51.9
Oeu017953.1 Olea europaea HOM05D004060 ORTHO05D004967 3.6e-19 99.8 276 42.4
MSTRG.19874 Avicennia marina HOM05D004060 ORTHO05D004967 4.8e-19 99.4 292 49.3
PSO339G1536 Papaver somniferum HOM05D004060 ORTHO05D004967 4.8e-19 99.4 325 45.5
HanXRQChr01g0008631 Helianthus annuus HOM05D004060 ORTHO05D004967 1.4e-18 97.8 279 53.8
Os03g0808300 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 3.1e-18 96.7 274 49.6
VMungo0720G0143 Vigna mungo HOM05D004060 ORTHO05D004967 3.1e-18 96.7 301 51.8
EL10Ac3g07036 Beta vulgaris HOM05D004060 ORTHO05D004967 4.0e-18 96.3 301 49.2
Hma1.2p1_0247F.1_g101840 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 4.0e-18 96.3 275 53.8
SGA_v2.0_scaffold69G23102 Striga asiatica HOM05D004060 ORTHO05D004967 4.0e-18 96.3 171 42.7
Zm00001eb061820 Zea mays HOM05D004060 ORTHO05D004967 4.0e-18 96.3 208 37.5
FAN05G5649 Fragaria x ananassa HOM05D004060 ORTHO05D004967 5.3e-18 95.9 292 48.6
Peaxi162Scf00493g00316 Petunia axillaris HOM05D004060 ORTHO05D004967 5.3e-18 95.9 210 37.6
Ca_08471_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 9.0e-18 95.1 210 38.1
Glyma.03G138100 Glycine max HOM05D004060 ORTHO05D004967 1.2e-17 94.7 195 42.6
Lj1g0010539 Lotus japonicus HOM05D004060 ORTHO05D004967 1.2e-17 94.7 293 51.2
Zm00001eb107230 Zea mays HOM05D004060 ORTHO05D004967 1.2e-17 94.7 287 44.6
HPP92_019624 Vanilla planifolia HOM05D004060 ORTHO05D004967 7.6e-17 92.0 183 39.9
ATR0332G033 Amborella trichopoda HOM05D004060 ORTHO05D004967 2.9e-16 90.1 269 51.3
Solyc04g015520.3 Solanum lycopersicum HOM05D004060 ORTHO05D004967 2.9e-16 90.1 294 51.7
Glyma.02G182600 Glycine max HOM05D004060 ORTHO05D004967 4.9e-16 89.4 296 51.7
Lsat_1_v5_gn_9_27220 Lactuca sativa HOM05D004060 ORTHO05D004967 1.1e-15 88.2 189 38.6
Lj2C380T14 Lonicera japonica HOM05D004060 ORTHO05D004967 1.1e-15 88.2 130 45.4
Os07g0569100 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 2.4e-15 87.0 282 52.5
Zm00001eb324720 Zea mays HOM05D004060 ORTHO05D004967 3.2e-15 86.7 283 52.7
PSO384G1698 Papaver somniferum HOM05D004060 ORTHO05D004967 5.4e-15 85.9 245 33.9
ECA247G2970 Erigeron canadensis HOM05D004060 ORTHO05D004967 7.1e-15 85.5 143 43.4
arahy.Tifrunner.gnm1.ann1.AM9K84 Arachis hypogaea HOM05D004060 ORTHO05D004967 9.3e-15 85.1 287 49.8
arahy.Tifrunner.gnm1.ann1.GL61MB Arachis hypogaea HOM05D004060 ORTHO05D004967 9.3e-15 85.1 250 54.0
Ca_29692_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 9.3e-15 85.1 162 72.8
Os07g0208600 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 9.3e-15 85.1 276 48.6
DCAR_020477 Daucus carota HOM05D004060 ORTHO05D004967 2.7e-14 83.6 270 53.0
Solyc10g080230.2 Solanum lycopersicum HOM05D004060 ORTHO05D004967 6.0e-14 82.4 135 43.0
Hund24724 Selenicereus undatus HOM05D004060 ORTHO05D004967 7.9e-14 82.0 276 37.7
MBI04_g36073_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 1.0e-13 81.6 207 37.2
SalBow1G5147 Salvia bowleyana HOM05D004060 ORTHO05D004967 1.8e-13 80.9 181 37.0
CAN.G676.50 Capsicum annuum HOM05D004060 ORTHO05D004967 8.7e-13 78.6 262 54.2
Sopen04g007590 Solanum pennellii HOM05D004060 ORTHO05D004967 2.5e-12 77.0 305 48.5
PGSC0003DMG400027238 Solanum tuberosum HOM05D004060 ORTHO05D004967 3.3e-12 76.6 297 49.2
arahy.Tifrunner.gnm1.ann1.49FMRE Arachis hypogaea HOM05D004060 ORTHO05D004967 1.3e-08 64.7 223 38.6
MD12G1072300 Malus domestica HOM05D004060 ORTHO05D004967 1.3e-08 64.7 293 46.8
Glyma.10G099400 Glycine max HOM05D004060 ORTHO05D004967 1.7e-08 64.3 293 46.4
HanXRQChr10g0300061 Helianthus annuus HOM05D004060 ORTHO05D004967 3.8e-08 63.2 142 39.4
HanXRQChr05g0132091 Helianthus annuus HOM05D004060 ORTHO05D004967 6.4e-08 62.4 255 47.5
ECA247G3737 Erigeron canadensis HOM05D003799 ORTHO05D001964 1.4e-07 61.2 133 42.9
arahy.Tifrunner.gnm1.ann1.N3K66E Arachis hypogaea HOM05D003004 ORTHO05D004967 4.2e-07 59.7 39 71.8
unitig_8.g4575 Utricularia gibba HOM05D004060 ORTHO05D004967 4.2e-07 59.7 172 30.2


User provided reference genes

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