Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G40070 Arabidopsis lyrata HOM05D007137 ORTHO05D008982 1.2e-126 456.4 222 100.0
AT2G41760 Arabidopsis thaliana HOM05D007137 ORTHO05D008982 4.5e-121 438.0 222 95.5
Thhalv10017217m.g Eutrema salsugineum HOM05D007137 ORTHO05D008982 3.8e-120 434.9 222 93.7
Carub.0004s2404 Capsella rubella HOM05D007137 ORTHO05D008982 5.5e-119 431.0 222 92.3
CARHR136840 Cardamine hirsuta HOM05D007137 ORTHO05D008982 9.3e-119 430.3 222 92.8
Sp4g24030 Schrenkiella parvula HOM05D007137 ORTHO05D008982 5.8e-113 411.0 222 89.6
BraA03t11558Z Brassica rapa HOM05D007137 ORTHO05D008982 1.2e-110 403.3 233 83.7
C03p27930 Brassica napus HOM05D007137 ORTHO05D008982 1.6e-110 402.9 227 85.5
A03p23410 Brassica napus HOM05D007137 ORTHO05D008982 3.9e-109 398.3 233 82.4
BolC3t15165H Brassica oleracea HOM05D007137 ORTHO05D008982 3.9e-109 398.3 239 81.2
THA.LOC104818226 Tarenaya hassleriana HOM05D007137 ORTHO05D008982 8.4e-104 380.6 220 79.1
Actinidia09328 Actinidia chinensis HOM05D007137 ORTHO05D008982 9.4e-87 323.9 207 70.0
Cfa016812 Carpinus fangiana HOM05D007137 ORTHO05D008982 2.7e-86 322.4 222 63.1
Rhsim03G0024800 Rhododendron simsii HOM05D007137 ORTHO05D008982 1.4e-85 320.1 208 69.7
Gohir.A09G122000 Gossypium hirsutum HOM05D007137 ORTHO05D008982 2.0e-84 316.2 216 65.7
Ciclev10005859m.g Citrus clementina HOM05D007137 ORTHO05D008982 4.4e-84 315.1 211 68.2
Rhsim03G0024600 Rhododendron simsii HOM05D007137 ORTHO05D008982 4.4e-84 315.1 208 68.8
Gohir.D09G118100 Gossypium hirsutum HOM05D007137 ORTHO05D008982 7.4e-84 314.3 212 66.5
Gorai.006G136400 Gossypium raimondii HOM05D007137 ORTHO05D008982 7.4e-84 314.3 212 66.5
Sc13g0001720 Simmondsia chinensis HOM05D007137 ORTHO05D008982 7.4e-84 314.3 208 66.3
Dinv39605 Davidia involucrata HOM05D007137 ORTHO05D008982 9.7e-84 313.9 213 66.7
Duzib093G1775 Durio zibethinus HOM05D007137 ORTHO05D008982 9.7e-84 313.9 211 64.5
CSS0026997 Camellia sinensis var. sinensis HOM05D007137 ORTHO05D008982 1.3e-83 313.5 208 69.2
vmacro07849 Vaccinium macrocarpon HOM05D007137 ORTHO05D008982 3.7e-83 312.0 216 67.1
Thecc.05G153200 Theobroma cacao HOM05D007137 ORTHO05D008982 6.3e-83 311.2 214 64.5
TWI74G1615 Tripterygium wilfordii HOM05D007137 ORTHO05D008982 7.0e-82 307.8 202 67.8
AUR62024453 Chenopodium quinoa HOM05D007137 ORTHO05D008982 9.1e-82 307.4 204 65.7
Hma1.2p1_2002F.1_g310780 Hydrangea macrophylla HOM05D007137 ORTHO05D008982 9.1e-82 307.4 214 64.5
TAR369G0818 Trochodendron aralioides HOM05D007137 ORTHO05D008982 9.1e-82 307.4 214 65.9
CiPaw.09G038400 Carya illinoinensis HOM05D007137 ORTHO05D008982 1.6e-81 306.6 222 61.3
Potri.006G051500 Populus trichocarpa HOM05D007137 ORTHO05D008982 3.5e-81 305.4 210 63.3
Aa31LG1G23770 Aethionema arabicum HOM05D007137 ORTHO05D008982 4.5e-81 305.1 174 83.3
Ca_26019_v3 Cicer arietinum L. HOM05D007137 ORTHO05D008982 4.5e-81 305.1 211 64.5
AUR62026042 Chenopodium quinoa HOM05D007137 ORTHO05D008982 1.3e-80 303.5 207 64.7
Migut.J01757 Erythranthe guttata HOM05D007137 ORTHO05D008982 1.3e-80 303.5 205 66.3
Lj5g0009390 Lotus japonicus HOM05D007137 ORTHO05D008982 1.3e-80 303.5 211 66.4
EL10Ac3g07093 Beta vulgaris HOM05D007137 ORTHO05D008982 1.7e-80 303.1 204 65.7
CANSAT80G1960 Cannabis sativa HOM05D007137 ORTHO05D008982 2.2e-80 302.8 221 63.8
TPR.G10636 Trifolium pratense HOM05D007137 ORTHO05D008982 2.9e-80 302.4 211 64.5
CANSAT80G0539 Cannabis sativa HOM05D007137 ORTHO05D008982 6.5e-80 301.2 211 64.5
Sopen04g007840 Solanum pennellii HOM05D007137 ORTHO05D008982 6.5e-80 301.2 209 61.7
Phvul.007G252600 Phaseolus vulgaris HOM05D007137 ORTHO05D008982 8.5e-80 300.8 211 65.4
PGR004G0226 Punica granatum HOM05D007137 ORTHO05D008982 1.1e-79 300.4 212 61.3
Solyc04g015760.4 Solanum lycopersicum HOM05D007137 ORTHO05D008982 1.5e-79 300.1 209 61.2
PGSC0003DMG400027277 Solanum tuberosum HOM05D007137 ORTHO05D008982 5.5e-79 298.1 217 60.4
Nitab4.5_0010636g0030 Nicotiana tabacum HOM05D007137 ORTHO05D008982 1.2e-78 297.0 218 59.2
FAN09G1348 Fragaria x ananassa HOM05D007137 ORTHO05D008982 1.6e-78 296.6 224 60.7
FvH4_6g23850 Fragaria vesca HOM05D007137 ORTHO05D008982 3.6e-78 295.4 224 60.3
QL07p000577 Quercus lobata HOM05D007137 ORTHO05D008982 3.6e-78 295.4 203 66.0
Cc06_g17570 Coffea canephora HOM05D007137 ORTHO05D008982 4.7e-78 295.0 215 60.9
Haze_19852 Corylus avellana HOM05D007137 ORTHO05D008982 6.1e-78 294.7 202 64.4
Prupe.7G059700 Prunus persica HOM05D007137 ORTHO05D008982 6.1e-78 294.7 222 61.3
FAN05G2215 Fragaria x ananassa HOM05D007137 ORTHO05D008982 1.4e-77 293.5 221 60.6
Lalb_Chr21g0316491 Lupinus albus HOM05D007137 ORTHO05D008982 1.8e-77 293.1 226 60.6
Medtr7g034355 Medicago truncatula HOM05D007137 ORTHO05D008982 1.8e-77 293.1 211 63.0
Nitab4.5_0005195g0030 Nicotiana tabacum HOM05D007137 ORTHO05D008982 1.8e-77 293.1 218 59.2
GSVIVG01033260001 Vitis vinifera HOM05D007137 ORTHO05D008982 1.8e-77 293.1 210 63.3
Nn2g15218 Nelumbo nucifera HOM05D007137 ORTHO05D008982 4.0e-77 292.0 219 60.3
Peaxi162Scf00130g00019 Petunia axillaris HOM05D007137 ORTHO05D008982 5.2e-77 291.6 203 62.1
Eucgr.A02346 Eucalyptus grandis HOM05D007137 ORTHO05D008982 6.7e-77 291.2 209 62.2
MSTRG.6429 Avicennia marina HOM05D007137 ORTHO05D008982 8.8e-77 290.8 219 61.6
Glyma.10G097900 Glycine max HOM05D007137 ORTHO05D008982 8.8e-77 290.8 211 64.0
RcHm_v2.0_Chr3g0482531 Rosa chinensis HOM05D007137 ORTHO05D008982 2.6e-76 289.3 215 61.4
Sed0021909 Sechium edule HOM05D007137 ORTHO05D008982 2.6e-76 289.3 224 60.3
MD12G1074200 Malus domestica HOM05D007137 ORTHO05D008982 7.5e-76 287.7 213 61.5
Sabra06G0036100 Salix brachista HOM05D007137 ORTHO05D008982 1.3e-75 287.0 210 60.5
HanXRQChr15g0491151 Helianthus annuus HOM05D007137 ORTHO05D008982 2.2e-75 286.2 219 61.6
MELO3C009672.2 Cucumis melo HOM05D007137 ORTHO05D008982 3.7e-75 285.4 222 60.8
Lsat_1_v5_gn_9_29000 Lactuca sativa HOM05D007137 ORTHO05D008982 3.7e-75 285.4 209 61.7
Hund24707 Selenicereus undatus HOM05D007137 ORTHO05D008982 6.3e-75 284.6 206 61.7
CsaV3_3G039290 Cucumis sativus L. HOM05D007137 ORTHO05D008982 8.2e-75 284.3 222 59.9
Oeu008913.1 Olea europaea HOM05D007137 ORTHO05D008982 1.2e-73 280.4 200 63.0
Oeu008915.1 Olea europaea HOM05D007137 ORTHO05D008982 1.2e-73 280.4 200 63.0
ECA247G4023 Erigeron canadensis HOM05D007137 ORTHO05D008982 1.1e-71 273.9 207 58.9
CAN.G1456.1 Capsicum annuum HOM05D007137 ORTHO05D008982 9.4e-71 270.8 185 63.2
Aqoxy1G00329 Aquilegia oxysepala HOM05D007137 ORTHO05D008982 8.8e-69 264.2 205 59.0
PSO384G0937 Papaver somniferum HOM05D007137 ORTHO05D008982 1.2e-68 263.8 208 60.6
arahy.Tifrunner.gnm1.ann1.QC7DP1 Arachis hypogaea HOM05D007137 ORTHO05D008982 1.1e-66 257.3 217 54.4
Psat6g120120 Pisum sativum HOM05D007137 ORTHO05D008982 1.8e-66 256.5 159 72.3
Ah.04g151610 Amaranthus hybridus HOM05D000942 ORTHO05D000918 4.1e-66 255.4 200 58.5
Atru.BG.154.p Acer truncatum HOM05D007137 ORTHO05D008982 2.0e-65 253.1 212 57.5
CAN.G676.70 Capsicum annuum HOM05D007137 ORTHO05D008982 3.5e-65 252.3 192 58.9
SalBow6G6768 Salvia bowleyana HOM05D007137 ORTHO05D008982 1.3e-64 250.4 239 52.7
Manes.09G022100 Manihot esculenta HOM05D007137 ORTHO05D008982 1.6e-62 243.4 209 56.0
MBI17_g01631_MAGBIO Magnolia biondii HOM05D007137 ORTHO05D008982 2.1e-62 243.0 221 53.8
arahy.Tifrunner.gnm1.ann1.F03MXT Arachis hypogaea HOM05D007137 ORTHO05D008982 8.8e-61 237.7 198 56.1
Os05g0387900 Oryza sativa ssp. japonica HOM05D007137 ORTHO05D008982 1.7e-59 233.4 213 52.6
SGA_v2.0_scaffold105G30410 Striga asiatica HOM05D007137 ORTHO05D008982 2.4e-58 229.6 175 60.0
Lju124C41G12 Lonicera japonica HOM05D007137 ORTHO05D008982 9.2e-58 227.6 163 62.6
Cpa.g.sc92.53 Carica papaya HOM05D007137 ORTHO05D008982 1.3e-56 223.8 174 59.2
HPP92_001018 Vanilla planifolia HOM05D007137 ORTHO05D008982 4.3e-55 218.8 196 51.5
CDE02G1742 Ceratophyllum demersum HOM05D007137 ORTHO05D008982 1.6e-54 216.9 170 58.8
DCAR_020492 Daucus carota HOM05D007137 ORTHO05D008982 3.6e-54 215.7 163 60.7
CSS0041211 Camellia sinensis var. sinensis HOM05D007137 ORTHO05D008982 6.1e-54 214.9 172 59.9
ATR0320G015 Amborella trichopoda HOM05D007137 ORTHO05D008982 4.0e-53 212.2 202 49.0
ClCG10G017100 Citrullus lanatus HOM05D007137 ORTHO05D008982 2.4e-50 203.0 243 44.9
Mapoly0062s0037 Marchantia polymorpha HOM05D007137 ORTHO05D008982 9.2e-50 201.1 195 52.8
FAN02G0118 Fragaria x ananassa HOM05D007137 ORTHO05D008982 2.3e-48 196.4 133 69.9
Pp3c8_16370 Physcomitrium patens HOM05D007137 ORTHO05D008982 8.9e-45 184.5 191 45.5
Hma1.2p1_2520F.1_g323835 Hydrangea macrophylla HOM05D007137 ORTHO05D008982 2.2e-43 179.9 105 76.2
SMO353G0157 Selaginella moellendorffii HOM05D007137 ORTHO05D008982 2.9e-43 179.5 200 46.5
SMO302G0006 Selaginella moellendorffii HOM05D007137 ORTHO05D008982 1.9e-42 176.8 212 44.3
Rhsim03G0024200 Rhododendron simsii HOM05D007137 ORTHO05D008982 5.4e-26 122.1 161 39.8
Zm00001eb286980 Zea mays HOM05D007137 ORTHO05D008982 7.8e-25 118.2 79 62.0
VMungo0720G0821 Vigna mungo HOM05D007137 ORTHO05D008982 4.7e-22 109.0 96 52.1
CBR_g39180 Chara braunii HOM05D007137 ORTHO05D008982 1.5e-20 104.0 96 50.0
CSS0024811 Camellia sinensis var. sinensis HOM05D007137 ORTHO05D008982 1.7e-19 100.5 81 56.8
SEGI_00420 Sequoiadendron giganteum HOM05D007137 ORTHO05D008982 4.8e-14 82.4 86 41.9
Cre04.g217912 Chlamydomonas reinhardtii HOM05D007137 ORTHO05D008982 2.4e-13 80.1 90 42.2


User provided reference genes

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