Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G40040 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 1.0e-63 246.5 119 100.0
AT2G41730 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 3.2e-57 224.9 120 92.5
AT5G24640 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 1.9e-54 215.7 119 88.2
BcaNung02830 Brassica carinata HOM05D004407 ORTHO05D005074 1.9e-41 172.6 122 70.5
Thhalv10019315m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 3.5e-40 168.3 122 70.5
C04p02920 Brassica napus HOM05D004407 ORTHO05D005074 5.1e-39 164.5 122 68.0
BolC4t21933H Brassica oleracea HOM05D004407 ORTHO05D005074 5.1e-39 164.5 122 68.0
A05p02450 Brassica napus HOM05D004407 ORTHO05D005074 8.7e-39 163.7 118 69.5
BraA05t19239Z Brassica rapa HOM05D004407 ORTHO05D005074 1.1e-38 163.3 122 68.0
CARHR025870 Cardamine hirsuta HOM05D004407 ORTHO05D005074 1.1e-38 163.3 124 70.2
BcaNung02832 Brassica carinata HOM05D004407 ORTHO05D005074 5.6e-38 161.0 122 66.4
Carub.0006s3296 Capsella rubella HOM05D004407 ORTHO05D005074 6.2e-37 157.5 123 72.4
A05p02470 Brassica napus HOM05D004407 ORTHO05D005074 1.5e-35 152.9 122 63.9
Carub.0004s2401 Capsella rubella HOM05D004407 ORTHO05D005074 2.0e-35 152.5 112 75.9
C04p02940 Brassica napus HOM05D004407 ORTHO05D005074 4.5e-35 151.4 122 63.1
BolC4t21934H Brassica oleracea HOM05D004407 ORTHO05D005074 4.5e-35 151.4 122 63.1
Sp4g23980 Schrenkiella parvula HOM05D004407 ORTHO05D005074 4.5e-35 151.4 123 65.0
C04p02950 Brassica napus HOM05D004407 ORTHO05D005074 1.0e-34 150.2 122 61.5
BolC4t21935H Brassica oleracea HOM05D004407 ORTHO05D005074 1.0e-34 150.2 122 61.5
A05p02480 Brassica napus HOM05D004407 ORTHO05D005074 1.7e-34 149.4 128 60.9
BraA05t19241Z Brassica rapa HOM05D004407 ORTHO05D005074 1.7e-34 149.4 128 60.9
BraA05t19240Z Brassica rapa HOM05D004407 ORTHO05D005074 6.5e-34 147.5 122 62.3
Carub.0006s3434 Capsella rubella HOM05D004407 ORTHO05D005074 2.1e-32 142.5 123 67.5
A05p02490 Brassica napus HOM05D004407 ORTHO05D005074 2.7e-32 142.1 122 60.7
BraA05t19242Z Brassica rapa HOM05D004407 ORTHO05D005074 2.7e-32 142.1 122 60.7
BcaNung02831 Brassica carinata HOM05D004407 ORTHO05D005074 3.0e-31 138.7 108 63.0
BcaB07g31285 Brassica carinata HOM05D004407 ORTHO05D005074 7.6e-27 124.0 120 59.2
BcaC04g22350 Brassica carinata HOM05D004407 ORTHO05D005074 3.0e-23 112.1 105 58.1
C09p20260 Brassica napus HOM05D006758 ORTHO05D008326 3.0e-23 112.1 105 58.1
BolC9t54931H Brassica oleracea HOM05D006758 ORTHO05D008326 1.9e-22 109.4 105 57.1
A09p16650 Brassica napus HOM05D006758 ORTHO05D008326 7.4e-22 107.5 105 57.1
BraA09t37304Z Brassica rapa HOM05D006758 ORTHO05D008326 7.4e-22 107.5 105 57.1
GSVIVG01003970001 Vitis vinifera HOM05D004407 ORTHO05D005074 4.8e-13 78.2 96 46.9
MD17G1019100 Malus domestica HOM05D004407 ORTHO05D005074 2.4e-12 75.9 131 37.4
Oeu054661.1 Olea europaea HOM05D004407 ORTHO05D005074 6.9e-12 74.3 114 43.9
MD09G1018600 Malus domestica HOM05D004407 ORTHO05D005074 9.1e-12 73.9 131 37.4
Prupe.3G298600 Prunus persica HOM05D004407 ORTHO05D005074 9.1e-12 73.9 128 39.8
CiPaw.03G049400 Carya illinoinensis HOM05D004407 ORTHO05D005074 1.2e-11 73.6 131 38.9
Nn3g16588 Nelumbo nucifera HOM05D004407 ORTHO05D005074 1.2e-11 73.6 131 38.2
PGR083G0262 Punica granatum HOM05D004407 ORTHO05D005074 1.2e-11 73.6 128 39.8
MBI11_g29154_MAGBIO Magnolia biondii HOM05D004407 ORTHO05D005074 1.5e-11 73.2 129 38.0
DCAR_015072 Daucus carota HOM05D004407 ORTHO05D005074 2.0e-11 72.8 133 39.8
Haze_14799 Corylus avellana HOM05D002760 ORTHO05D003169 2.6e-11 72.4 132 40.9
Eucgr.J02274 Eucalyptus grandis HOM05D004407 ORTHO05D005074 2.6e-11 72.4 84 47.6
QL02p073303 Quercus lobata HOM05D004407 ORTHO05D005074 2.6e-11 72.4 122 43.4
QL02p073308 Quercus lobata HOM05D004407 ORTHO05D005074 2.6e-11 72.4 122 43.4
Ciclev10017684m.g Citrus clementina HOM05D004407 ORTHO05D005074 3.4e-11 72.0 85 45.9
Hma1.2p1_0818F.1_g223550 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 3.4e-11 72.0 119 42.9
Hma1.2p1_1484F.1_g286420 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 3.4e-11 72.0 119 42.9
Hma1.2p1_0818F.1_g223560 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 5.9e-11 71.2 86 45.3
CSS0009144 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 7.7e-11 70.9 96 42.7
COL.COLO4_29257 Corchorus olitorius HOM05D004407 ORTHO05D005074 7.7e-11 70.9 85 45.9
TWI36G1179 Tripterygium wilfordii HOM05D004407 ORTHO05D005074 7.7e-11 70.9 132 38.6
DCAR_015074 Daucus carota HOM05D004407 ORTHO05D005074 1.3e-10 70.1 94 43.6
Gohir.A09G032000 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.3e-10 70.1 86 47.7
Hma1.2p1_0818F.1_g223530 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.3e-10 70.1 86 45.3
Hma1.2p1_1484F.1_g286386 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.3e-10 70.1 86 45.3
Hma1.2p1_1484F.1_g286410 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.3e-10 70.1 86 45.3
Sed0027888 Sechium edule HOM05D004407 ORTHO05D005074 1.3e-10 70.1 129 39.5
THA.LOC104805351 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 1.3e-10 70.1 132 40.9
Nn4g22470 Nelumbo nucifera HOM05D004407 ORTHO05D005074 1.7e-10 69.7 86 45.3
TPR.G1105 Trifolium pratense HOM05D004407 ORTHO05D005074 1.7e-10 69.7 101 44.6
Solyc02g093710.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 2.2e-10 69.3 86 44.2
Sopen02g038350 Solanum pennellii HOM05D004407 ORTHO05D005074 2.2e-10 69.3 86 44.2
Thecc.04G026300 Theobroma cacao HOM05D004407 ORTHO05D005074 2.2e-10 69.3 86 46.5
Ah.06g182110 Amaranthus hybridus HOM05D004407 ORTHO05D005074 2.9e-10 68.9 128 38.3
Hma1.2p1_0818F.1_g223510 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.9e-10 68.9 119 42.0
Nitab4.5_0001863g0220 Nicotiana tabacum HOM05D004407 ORTHO05D005074 2.9e-10 68.9 86 44.2
Aa31LG2G5400 Aethionema arabicum HOM05D004407 ORTHO05D005074 5.0e-10 68.2 86 46.5
TPR.G1219 Trifolium pratense HOM05D004407 ORTHO05D005074 5.0e-10 68.2 96 44.8
Sabra16G0218800 Salix brachista HOM05D000111 ORTHO05D000134 6.5e-10 67.8 120 37.5
Cpa.g.sc130.51 Carica papaya HOM05D004407 ORTHO05D005074 8.5e-10 67.4 136 39.7
Nitab4.5_0001031g0160 Nicotiana tabacum HOM05D004407 ORTHO05D005074 8.5e-10 67.4 86 44.2
Rhsim10G0012400 Rhododendron simsii HOM05D004407 ORTHO05D005074 8.5e-10 67.4 126 40.5
THA.LOC104825308 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 8.5e-10 67.4 123 41.5
EL10Ac4g07679 Beta vulgaris HOM05D004407 ORTHO05D005074 1.1e-09 67.0 125 38.4
Duzib187G1586 Durio zibethinus HOM05D004407 ORTHO05D005074 1.1e-09 67.0 128 39.1
Gohir.D04G080420 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.1e-09 67.0 125 37.6
Hma1.2p1_1484F.1_g286390 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.1e-09 67.0 119 41.2
Manes.15G155400 Manihot esculenta HOM05D004407 ORTHO05D005074 1.1e-09 67.0 126 38.1
PGSC0003DMG400012626 Solanum tuberosum HOM05D004407 ORTHO05D005074 1.1e-09 67.0 86 41.9
MELO3C021614.2 Cucumis melo HOM05D004407 ORTHO05D005074 1.4e-09 66.6 86 44.2
Potri.001G338100 Populus trichocarpa HOM05D004407 ORTHO05D005074 1.9e-09 66.2 86 40.7
CANSAT64G1834 Cannabis sativa HOM05D004407 ORTHO05D005074 2.5e-09 65.9 121 40.5
ClCG09G019590 Citrullus lanatus HOM05D004407 ORTHO05D005074 3.2e-09 65.5 121 38.0
Gorai.012G091100 Gossypium raimondii HOM05D004407 ORTHO05D005074 3.2e-09 65.5 125 37.6
Actinidia05950 Actinidia chinensis HOM05D004407 ORTHO05D005074 4.2e-09 65.1 126 39.7
Aqoxy3G01382 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 4.2e-09 65.1 133 37.6
VMungo1383G1696 Vigna mungo HOM05D004407 ORTHO05D005074 4.2e-09 65.1 84 44.0
CAN.G473.50 Capsicum annuum HOM05D004407 ORTHO05D005074 5.5e-09 64.7 129 38.0
Migut.K01432 Erythranthe guttata HOM05D004407 ORTHO05D005074 5.5e-09 64.7 113 38.9
Glyma.02G190900 Glycine max HOM05D004407 ORTHO05D005074 5.5e-09 64.7 84 42.9
Psat0s1368g0080 Pisum sativum HOM05D004407 ORTHO05D005074 5.5e-09 64.7 81 44.4
Prupe.3G298500 Prunus persica HOM05D004407 ORTHO05D005074 5.5e-09 64.7 113 35.4
FvH4_6g52330 Fragaria vesca HOM05D004407 ORTHO05D005074 7.2e-09 64.3 130 36.2
Sabra16G0217100 Salix brachista HOM05D004407 ORTHO05D005074 7.2e-09 64.3 87 39.1
CsaV3_5G026800 Cucumis sativus L. HOM05D004407 ORTHO05D005074 9.4e-09 63.9 121 36.4
FAN05G1079 Fragaria x ananassa HOM05D004407 ORTHO05D005074 9.4e-09 63.9 130 35.4
PSO017G7028 Papaver somniferum HOM05D004407 ORTHO05D005074 9.4e-09 63.9 89 40.4
PSO832G4071 Papaver somniferum HOM05D004407 ORTHO05D005074 9.4e-09 63.9 86 40.7
TAR622G1038 Trochodendron aralioides HOM05D004407 ORTHO05D005074 9.4e-09 63.9 130 37.7
Carub.0007s3479 Capsella rubella HOM05D004407 ORTHO05D005074 1.2e-08 63.5 86 40.7
CANSAT64G2558 Cannabis sativa HOM05D004407 ORTHO05D005074 1.6e-08 63.2 130 34.6
CARHR213820 Cardamine hirsuta HOM05D004407 ORTHO05D005074 1.6e-08 63.2 86 43.0
TAR625G1142 Trochodendron aralioides HOM05D004407 ORTHO05D005074 1.6e-08 63.2 89 43.8
Thhalv10028148m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 2.1e-08 62.8 86 40.7
PSO063G0264 Papaver somniferum HOM05D004407 ORTHO05D005074 2.1e-08 62.8 89 39.3
Sp7g01180 Schrenkiella parvula HOM05D004407 ORTHO05D005074 2.1e-08 62.8 86 40.7
SGA_v2.0_scaffold47G17536 Striga asiatica HOM05D004407 ORTHO05D005074 2.1e-08 62.8 107 41.1
PGR083G1149 Punica granatum HOM05D004407 ORTHO05D005074 2.7e-08 62.4 128 35.9
Sed0005342 Sechium edule HOM05D004407 ORTHO05D005074 2.7e-08 62.4 121 36.4
Sed0009704 Sechium edule HOM05D004407 ORTHO05D005074 2.7e-08 62.4 86 43.0
Medtr1g051195 Medicago truncatula HOM05D004407 ORTHO05D005074 3.6e-08 62.0 126 38.1
Phvul.008G156900 Phaseolus vulgaris HOM05D004407 ORTHO05D005074 3.6e-08 62.0 84 42.9
Sopen02g017070 Solanum pennellii HOM05D000413 ORTHO05D005074 4.7e-08 61.6 128 36.7
C04p47510 Brassica napus HOM05D004407 ORTHO05D005074 7.9e-08 60.8 86 41.9
BraA04t17032Z Brassica rapa HOM05D004407 ORTHO05D005074 7.9e-08 60.8 86 41.9
Gohir.A05G342300 Gossypium hirsutum HOM05D004407 ORTHO05D005074 7.9e-08 60.8 81 43.2
Potri.001G336200 Populus trichocarpa HOM05D004407 ORTHO05D005074 1.0e-07 60.5 133 33.1
Aqoxy4G01774 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 1.8e-07 59.7 84 40.5
Aqoxy5G03597 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 1.8e-07 59.7 84 40.5
BolC4t26352H Brassica oleracea HOM05D004407 ORTHO05D005074 1.8e-07 59.7 86 40.7
Migut.H00046 Erythranthe guttata HOM05D004407 ORTHO05D005074 1.8e-07 59.7 126 34.9
A04p13730 Brassica napus HOM05D004407 ORTHO05D005074 2.3e-07 59.3 86 41.9
TAR374G1728 Trochodendron aralioides HOM05D004407 ORTHO05D005074 2.3e-07 59.3 78 44.9
Ca_03872_v3 Cicer arietinum L. HOM05D004407 ORTHO05D005074 3.0e-07 58.9 82 45.1
FAN14G0353 Fragaria x ananassa HOM05D004407 ORTHO05D005074 3.0e-07 58.9 86 38.4
Aa31LG9G940 Aethionema arabicum HOM05D004407 ORTHO05D005074 3.9e-07 58.5 86 41.9
MSTRG.24058 Avicennia marina HOM05D004407 ORTHO05D005074 5.1e-07 58.2 90 40.0
PSO407G0367 Papaver somniferum HOM05D004407 ORTHO05D005074 8.8e-07 57.4 86 37.2
PGSC0003DMG400006921 Solanum tuberosum HOM05D004407 ORTHO05D005074 8.8e-07 57.4 125 36.0
RcHm_v2.0_Chr2g0173921 Rosa chinensis HOM05D004407 ORTHO05D005074 1.5e-06 56.6 98 36.7
Solyc02g067935.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 2.0e-06 56.2 68 45.6
BcaB02g07933 Brassica carinata HOM05D004407 ORTHO05D005074 3.3e-06 55.5 88 39.8
Rhsim10G0012300 Rhododendron simsii HOM05D004407 ORTHO05D005074 7.4e-06 54.3 106 39.6


User provided reference genes

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