Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G39870 Arabidopsis lyrata HOM05D003650 ORTHO05D004213 1.2e-106 389.8 189 100.0
AT2G41770 Arabidopsis thaliana HOM05D003650 ORTHO05D004213 2.0e-90 335.9 167 95.8
Thhalv10016286m.g Eutrema salsugineum HOM05D003650 ORTHO05D004213 1.3e-89 333.2 167 94.6
CARHR136860 Cardamine hirsuta HOM05D003650 ORTHO05D004213 1.7e-89 332.8 167 95.2
Carub.0004s2405 Capsella rubella HOM05D003650 ORTHO05D004213 2.2e-89 332.4 167 94.0
BcaNung02835 Brassica carinata HOM05D003650 ORTHO05D004213 3.8e-89 331.6 167 93.4
AL4G40080 Arabidopsis lyrata HOM05D003650 ORTHO05D004213 6.5e-89 330.9 167 93.4
Aa31LG1G23780 Aethionema arabicum HOM05D003650 ORTHO05D004213 1.1e-88 330.1 167 92.8
C03p27940 Brassica napus HOM05D003650 ORTHO05D004213 3.2e-88 328.6 167 93.4
A05p02520 Brassica napus HOM05D003650 ORTHO05D004213 4.2e-88 328.2 167 92.2
C04p02980 Brassica napus HOM05D003650 ORTHO05D004213 4.2e-88 328.2 167 92.2
BolC4t21937H Brassica oleracea HOM05D003650 ORTHO05D004213 4.2e-88 328.2 167 92.2
BraA03t11559Z Brassica rapa HOM05D003650 ORTHO05D004213 4.2e-88 328.2 167 92.8
BraA05t19245Z Brassica rapa HOM05D003650 ORTHO05D004213 4.2e-88 328.2 167 92.2
BolC3t15166H Brassica oleracea HOM05D003650 ORTHO05D004213 1.2e-87 326.6 167 92.8
A03p23420 Brassica napus HOM05D003650 ORTHO05D004213 1.6e-87 326.2 167 92.2
Sp4g24040 Schrenkiella parvula HOM05D003650 ORTHO05D004213 1.6e-87 326.2 167 92.2
THA.LOC104802108 Tarenaya hassleriana HOM05D003650 ORTHO05D004213 4.4e-85 318.2 167 89.2
Sp5g05180 Schrenkiella parvula HOM05D003650 ORTHO05D004213 9.8e-85 317.0 167 88.0
Carub.0005s2426 Capsella rubella HOM05D003650 ORTHO05D004213 1.7e-84 316.2 167 88.6
Thhalv10005801m.g Eutrema salsugineum HOM05D003650 ORTHO05D004213 6.3e-84 314.3 167 88.0
AT3G57420 Arabidopsis thaliana HOM05D003650 ORTHO05D004213 1.1e-83 313.5 167 86.8
AL5G38950 Arabidopsis lyrata HOM05D003650 ORTHO05D004213 1.4e-83 313.2 167 87.4
CARHR167620 Cardamine hirsuta HOM05D003650 ORTHO05D004213 1.6e-82 309.7 167 85.6
Cpa.g.sc92.50 Carica papaya HOM05D003650 ORTHO05D004213 2.0e-82 309.3 167 85.0
Duzib093G1511 Durio zibethinus HOM05D003650 ORTHO05D004213 4.5e-82 308.1 167 85.0
Gohir.A09G122300 Gossypium hirsutum HOM05D003650 ORTHO05D004213 4.5e-82 308.1 167 83.8
Manes.09G021900 Manihot esculenta HOM05D003650 ORTHO05D004213 1.0e-81 307.0 167 85.6
Gohir.D09G118300 Gossypium hirsutum HOM05D003650 ORTHO05D004213 2.9e-81 305.4 167 82.6
Gorai.006G136600 Gossypium raimondii HOM05D003650 ORTHO05D004213 2.9e-81 305.4 167 83.2
Potri.006G051000 Populus trichocarpa HOM05D003650 ORTHO05D004213 2.9e-81 305.4 167 84.4
Thecc.05G153700 Theobroma cacao HOM05D003650 ORTHO05D004213 3.8e-81 305.1 167 84.4
Ciclev10004391m.g Citrus clementina HOM05D003650 ORTHO05D004213 6.6e-81 304.3 167 84.4
Gohir.D09G118400 Gossypium hirsutum HOM05D003650 ORTHO05D004213 6.6e-81 304.3 167 83.2
ClCG10G016580 Citrullus lanatus HOM05D003650 ORTHO05D004213 1.5e-80 303.1 167 83.8
Gohir.A09G122200 Gossypium hirsutum HOM05D003650 ORTHO05D004213 1.5e-80 303.1 167 81.4
Sabra06G0035700 Salix brachista HOM05D003650 ORTHO05D004213 1.5e-80 303.1 167 83.8
Atru.chr1.1095 Acer truncatum HOM05D003650 ORTHO05D004213 1.9e-80 302.8 167 83.8
CANSAT80G0970 Cannabis sativa HOM05D003650 ORTHO05D004213 1.9e-80 302.8 167 83.8
CANSAT80G1317 Cannabis sativa HOM05D003650 ORTHO05D004213 1.9e-80 302.8 167 83.8
Sabra16G0058400 Salix brachista HOM05D003650 ORTHO05D004213 1.9e-80 302.8 167 83.8
Duzib128G1026 Durio zibethinus HOM05D003650 ORTHO05D004213 2.5e-80 302.4 167 83.8
COL.COLO4_28278 Corchorus olitorius HOM05D003650 ORTHO05D004213 7.2e-80 300.8 167 83.2
Duzib205G0897 Durio zibethinus HOM05D003650 ORTHO05D004213 7.2e-80 300.8 167 83.2
Sed0014274 Sechium edule HOM05D003650 ORTHO05D004213 1.2e-79 300.1 167 82.6
Hma1.2p1_2002F.1_g310720 Hydrangea macrophylla HOM05D003650 ORTHO05D004213 1.6e-79 299.7 167 82.6
TWI77G0711 Tripterygium wilfordii HOM05D003650 ORTHO05D004213 1.6e-79 299.7 167 82.0
Potri.016G055700 Populus trichocarpa HOM05D003650 ORTHO05D004213 2.1e-79 299.3 167 83.2
Prupe.7G061300 Prunus persica HOM05D003650 ORTHO05D004213 2.8e-79 298.9 186 75.3
Peaxi162Scf00130g00016 Petunia axillaris HOM05D003650 ORTHO05D004213 8.0e-79 297.4 167 82.6
MELO3C009717.2 Cucumis melo HOM05D003650 ORTHO05D004213 1.0e-78 297.0 167 82.6
Dinv12480 Davidia involucrata HOM05D003650 ORTHO05D004213 1.0e-78 297.0 167 82.0
Manes.08G050700 Manihot esculenta HOM05D003650 ORTHO05D004213 1.4e-78 296.6 167 83.2
Nn2g15253 Nelumbo nucifera HOM05D003650 ORTHO05D004213 1.4e-78 296.6 167 80.8
Actinidia09330 Actinidia chinensis HOM05D003650 ORTHO05D004213 2.3e-78 295.8 167 83.2
MSTRG.6431 Avicennia marina HOM05D003650 ORTHO05D004213 2.3e-78 295.8 167 80.8
Nitab4.5_0005195g0070 Nicotiana tabacum HOM05D003650 ORTHO05D004213 2.3e-78 295.8 167 81.4
Actinidia39226 Actinidia chinensis HOM05D003650 ORTHO05D004213 3.0e-78 295.4 167 82.0
QL07p000311 Quercus lobata HOM05D003650 ORTHO05D004213 3.0e-78 295.4 167 80.8
HanXRQChr10g0288771 Helianthus annuus HOM05D003650 ORTHO05D004213 4.0e-78 295.0 167 80.2
CSS0010444 Camellia sinensis var. sinensis HOM05D003650 ORTHO05D004213 5.2e-78 294.7 167 80.8
MD12G1073600 Malus domestica HOM05D003650 ORTHO05D004213 5.2e-78 294.7 167 80.8
Ah.04g151780 Amaranthus hybridus HOM05D003650 ORTHO05D004213 6.8e-78 294.3 167 80.2
Cc06_g17090 Coffea canephora HOM05D003650 ORTHO05D004213 6.8e-78 294.3 167 80.2
DCAR_013601 Daucus carota HOM05D003650 ORTHO05D004213 8.9e-78 293.9 167 79.0
MD14G1071900 Malus domestica HOM05D003650 ORTHO05D004213 8.9e-78 293.9 186 74.2
Nitab4.5_0010636g0040 Nicotiana tabacum HOM05D003650 ORTHO05D004213 8.9e-78 293.9 167 80.8
EL10Ac3g07088 Beta vulgaris HOM05D003650 ORTHO05D004213 1.2e-77 293.5 167 81.4
CiPaw.09G038100 Carya illinoinensis HOM05D003650 ORTHO05D004213 1.2e-77 293.5 186 73.1
PGR004G2044 Punica granatum HOM05D003650 ORTHO05D004213 1.5e-77 293.1 167 80.8
Sc13g0001770 Simmondsia chinensis HOM05D003650 ORTHO05D004213 1.5e-77 293.1 167 80.8
Nn7g36273 Nelumbo nucifera HOM05D003650 ORTHO05D004213 2.6e-77 292.4 167 79.6
PGSC0003DMG400027249 Solanum tuberosum HOM05D003650 ORTHO05D004213 3.4e-77 292.0 167 80.2
SGA_v2.0_scaffold69G23114 Striga asiatica HOM05D003650 ORTHO05D004213 4.4e-77 291.6 167 80.2
TWI74G1194 Tripterygium wilfordii HOM05D003650 ORTHO05D004213 4.4e-77 291.6 167 80.2
Lj2A385G21 Lonicera japonica HOM05D003650 ORTHO05D004213 7.5e-77 290.8 170 78.2
vmacro07855 Vaccinium macrocarpon HOM05D003650 ORTHO05D004213 9.8e-77 290.4 167 80.2
Ah.13g076450 Amaranthus hybridus HOM05D003650 ORTHO05D004213 1.3e-76 290.0 167 79.6
ECA247G3671 Erigeron canadensis HOM05D003650 ORTHO05D004213 1.3e-76 290.0 167 79.0
Lsat_1_v5_gn_9_29041 Lactuca sativa HOM05D003650 ORTHO05D004213 1.3e-76 290.0 167 79.6
SalBow6G5443 Salvia bowleyana HOM05D003650 ORTHO05D004213 1.3e-76 290.0 167 79.0
AUR62024446 Chenopodium quinoa HOM05D003650 ORTHO05D004213 2.2e-76 289.3 167 79.0
RcHm_v2.0_Chr3g0482321 Rosa chinensis HOM05D003650 ORTHO05D004213 2.2e-76 289.3 167 79.6
Oeu008162.1 Olea europaea HOM05D003650 ORTHO05D004213 2.8e-76 288.9 167 79.6
Eucgr.A02349 Eucalyptus grandis HOM05D003650 ORTHO05D004213 3.7e-76 288.5 167 78.4
Solyc04g015740.3 Solanum lycopersicum HOM05D003650 ORTHO05D004213 3.7e-76 288.5 167 79.0
CAN.G676.68 Capsicum annuum HOM05D003650 ORTHO05D004213 4.9e-76 288.1 167 79.6
AUR62026036 Chenopodium quinoa HOM05D003650 ORTHO05D004213 6.3e-76 287.7 167 78.4
GSVIVG01033278001 Vitis vinifera HOM05D003650 ORTHO05D004213 6.3e-76 287.7 167 79.0
Sopen04g007820 Solanum pennellii HOM05D003650 ORTHO05D004213 8.3e-76 287.3 167 78.4
Lj5g0024914 Lotus japonicus HOM05D003650 ORTHO05D004213 1.4e-75 286.6 167 79.6
Migut.J01760 Erythranthe guttata HOM05D003650 ORTHO05D004213 1.8e-75 286.2 167 77.2
PSO384G3418 Papaver somniferum HOM05D003650 ORTHO05D004213 2.4e-75 285.8 167 78.4
TAR633G1518 Trochodendron aralioides HOM05D003650 ORTHO05D004213 2.4e-75 285.8 167 77.2
CiPaw.10G033200 Carya illinoinensis HOM05D003650 ORTHO05D004213 4.1e-75 285.0 167 77.2
TAR636G3054 Trochodendron aralioides HOM05D003650 ORTHO05D004213 5.4e-75 284.6 167 76.6
PSO339G5560 Papaver somniferum HOM05D003650 ORTHO05D004213 7.0e-75 284.3 167 77.8
arahy.Tifrunner.gnm1.ann1.MS35EQ Arachis hypogaea HOM05D003650 ORTHO05D004213 1.2e-74 283.5 167 77.2
arahy.Tifrunner.gnm1.ann1.YDMB1U Arachis hypogaea HOM05D003650 ORTHO05D004213 1.2e-74 283.5 167 77.2
Aqoxy2G00151 Aquilegia oxysepala HOM05D003650 ORTHO05D004213 1.6e-74 283.1 167 77.8
unitig_26.g9048 Utricularia gibba HOM05D003650 ORTHO05D004213 2.0e-74 282.7 167 77.8
Lalb_Chr06g0173451 Lupinus albus HOM05D003650 ORTHO05D004213 2.7e-74 282.3 167 77.8
Hund19149 Selenicereus undatus HOM05D003650 ORTHO05D004213 5.9e-74 281.2 167 75.4
Psat6g120000 Pisum sativum HOM05D003650 ORTHO05D004213 1.0e-73 280.4 167 77.8
unitig_749.g14146 Utricularia gibba HOM05D003650 ORTHO05D004213 1.3e-73 280.0 167 76.6
Glyma.10G097600 Glycine max HOM05D003650 ORTHO05D004213 1.7e-73 279.6 167 77.2
Ca_26017_v3 Cicer arietinum L. HOM05D003650 ORTHO05D004213 2.9e-73 278.9 167 75.4
FvH4_6g23790 Fragaria vesca HOM05D003650 ORTHO05D004213 3.8e-73 278.5 167 76.6
FAN14G5543 Fragaria x ananassa HOM05D003650 ORTHO05D004213 3.8e-73 278.5 167 76.6
Glyma.02G184100 Glycine max HOM05D003650 ORTHO05D004213 3.8e-73 278.5 167 77.2
Phvul.007G252800 Phaseolus vulgaris HOM05D003650 ORTHO05D004213 3.8e-73 278.5 167 76.6
VMungo0720G2955 Vigna mungo HOM05D003650 ORTHO05D004213 3.8e-73 278.5 167 77.2
FAN02G1020 Fragaria x ananassa HOM05D003650 ORTHO05D004213 1.1e-72 276.9 167 76.0
FAN05G4085 Fragaria x ananassa HOM05D003650 ORTHO05D004213 1.5e-72 276.6 167 76.0
Sed0014161 Sechium edule HOM05D003650 ORTHO05D004213 1.5e-72 276.6 167 77.2
FAN09G0940 Fragaria x ananassa HOM05D003650 ORTHO05D004213 4.3e-72 275.0 167 75.4
Dinv09321 Davidia involucrata HOM05D003650 ORTHO05D004213 3.6e-71 271.9 167 73.7
Lju124C41T4 Lonicera japonica HOM05D003650 ORTHO05D004213 3.6e-71 271.9 167 74.9
GSVIVG01032164001 Vitis vinifera HOM05D003650 ORTHO05D004213 6.1e-71 271.2 170 74.1
TPR.G10642 Trifolium pratense HOM05D003650 ORTHO05D004213 8.0e-71 270.8 167 73.7
Lalb_Chr20g0110481 Lupinus albus HOM05D003650 ORTHO05D004213 4.0e-70 268.5 167 74.3
Rhsim07G0058200 Rhododendron simsii HOM05D003650 ORTHO05D004213 2.0e-69 266.2 167 71.3
ECA248G2213 Erigeron canadensis HOM05D003650 ORTHO05D004213 3.4e-69 265.4 167 70.1
CSS0035654 Camellia sinensis var. sinensis HOM05D003650 ORTHO05D004213 7.5e-69 264.2 167 71.3
CSS0046501 Camellia sinensis var. sinensis HOM05D003650 ORTHO05D004213 7.5e-69 264.2 167 71.3
Haze_19859 Corylus avellana HOM05D003650 ORTHO05D004213 3.7e-68 261.9 248 54.8
Zm00001eb287230 Zea mays HOM05D003650 ORTHO05D004213 4.9e-68 261.5 167 69.5
Os05g0391200 Oryza sativa ssp. japonica HOM05D003650 ORTHO05D004213 1.9e-67 259.6 167 70.7
HPP92_010728 Vanilla planifolia HOM05D003650 ORTHO05D004213 1.9e-67 259.6 167 70.7
Nitab4.5_0000707g0190 Nicotiana tabacum HOM05D003650 ORTHO05D004213 4.1e-67 258.5 167 70.7
Nitab4.5_0008441g0020 Nicotiana tabacum HOM05D003650 ORTHO05D004213 4.1e-67 258.5 167 70.7
CAN.G219.62 Capsicum annuum HOM05D003650 ORTHO05D004213 5.4e-67 258.1 167 70.1
vmacro13691 Vaccinium macrocarpon HOM05D003650 ORTHO05D004213 7.0e-67 257.7 167 70.7
Rhsim03G0022300 Rhododendron simsii HOM05D003650 ORTHO05D004213 1.2e-66 256.9 234 56.4
Sopen01g034570 Solanum pennellii HOM05D003650 ORTHO05D004213 1.2e-66 256.9 167 68.9
Lsat_1_v5_gn_5_161461 Lactuca sativa HOM05D003650 ORTHO05D004213 1.6e-66 256.5 169 68.0
HanXRQChr01g0008741 Helianthus annuus HOM05D003650 ORTHO05D004213 2.7e-66 255.8 167 66.5
Solyc01g087600.3 Solanum lycopersicum HOM05D003650 ORTHO05D004213 2.7e-66 255.8 167 68.9
PGSC0003DMG400006853 Solanum tuberosum HOM05D003650 ORTHO05D004213 2.7e-66 255.8 167 68.9
CDE07G0124 Ceratophyllum demersum HOM05D003650 ORTHO05D004213 4.6e-66 255.0 168 70.8
Peaxi162Scf00694g00117 Petunia axillaris HOM05D003650 ORTHO05D004213 4.6e-66 255.0 167 68.3
Prupe.2G020200 Prunus persica HOM05D003650 ORTHO05D004213 1.3e-65 253.4 167 68.9
CDE11G0341 Ceratophyllum demersum HOM05D003650 ORTHO05D004213 1.9e-64 249.6 168 70.2
Os07g0656400 Oryza sativa ssp. japonica HOM05D003650 ORTHO05D004213 2.5e-64 249.2 167 67.7
RcHm_v2.0_Chr1g0317301 Rosa chinensis HOM05D003650 ORTHO05D004213 5.6e-64 248.1 168 67.9
Zm00001eb329540 Zea mays HOM05D003650 ORTHO05D004213 7.3e-64 247.7 167 65.9
ATR0626G026 Amborella trichopoda HOM05D003650 ORTHO05D004213 2.1e-63 246.1 167 68.9
Cc02_g29000 Coffea canephora HOM05D003650 ORTHO05D004213 2.8e-63 245.7 167 66.5
MD07G1018300 Malus domestica HOM05D003650 ORTHO05D004213 8.0e-63 244.2 167 65.3
CANSAT80G2225 Cannabis sativa HOM05D003650 ORTHO05D004213 1.1e-62 243.8 169 67.5
Oeu027406.1 Olea europaea HOM05D003650 ORTHO05D004213 1.1e-62 243.8 167 67.7
Rhsim03G0021200 Rhododendron simsii HOM05D003650 ORTHO05D004213 6.8e-62 241.1 167 69.5
Oeu023110.1 Olea europaea HOM05D003650 ORTHO05D004213 8.9e-62 240.7 138 80.4
FvH4_7g01460 Fragaria vesca HOM05D003650 ORTHO05D004213 2.6e-61 239.2 168 66.7
FAN06G0077 Fragaria x ananassa HOM05D003650 ORTHO05D004213 2.6e-61 239.2 168 66.7
SEGI_32089 Sequoiadendron giganteum HOM05D003650 ORTHO05D004213 5.8e-61 238.0 167 67.1
HPP92_012091 Vanilla planifolia HOM05D003650 ORTHO05D004213 1.0e-57 227.3 167 61.7
Medtr0121s0010 Medicago truncatula HOM05D003650 ORTHO05D004213 9.5e-56 220.7 138 74.6
Sed0006713 Sechium edule HOM05D003650 ORTHO05D004213 1.8e-54 216.5 169 59.8
CsaV3_7G030820 Cucumis sativus L. HOM05D003650 ORTHO05D004213 2.0e-53 213.0 168 60.7
ClCG09G003920 Citrullus lanatus HOM05D003650 ORTHO05D004213 3.4e-53 212.2 168 59.5
MELO3C023570.2 Cucumis melo HOM05D003650 ORTHO05D004213 4.4e-53 211.8 168 59.5
SMO329G0078 Selaginella moellendorffii HOM05D003650 ORTHO05D004213 9.6e-40 167.5 166 44.0
Mapoly0004s0304 Marchantia polymorpha HOM05D003650 ORTHO05D004213 2.1e-39 166.4 167 44.9
FAN10G4002 Fragaria x ananassa HOM05D003650 ORTHO05D004213 9.9e-37 157.5 168 50.6
Pp3c14_20380 Physcomitrium patens HOM05D003650 ORTHO05D004213 9.9e-37 157.5 171 43.9
Pp3c17_18550 Physcomitrium patens HOM05D003650 ORTHO05D004213 3.2e-35 152.5 171 42.1
CDE11G0464 Ceratophyllum demersum HOM05D003650 ORTHO05D004213 1.0e-33 147.5 167 47.9
SMO165G0114 Selaginella moellendorffii HOM05D003650 ORTHO05D004213 9.6e-32 141.0 168 39.3
Actinidia19412 Actinidia chinensis HOM05D003650 ORTHO05D004213 6.2e-31 138.3 93 69.9
CARHR167380 Cardamine hirsuta HOM05D003650 ORTHO05D004213 1.7e-28 130.2 76 77.6
CsaV3_3G039750 Cucumis sativus L. HOM05D003650 ORTHO05D004213 1.1e-27 127.5 69 85.5
Lalb_Chr21g0316481 Lupinus albus HOM05D003650 ORTHO05D004213 2.3e-25 119.8 103 58.3
Dinv39600 Davidia involucrata HOM05D003650 ORTHO05D004213 1.9e-24 116.7 68 79.4
Gorai.006G136700 Gossypium raimondii HOM05D003650 ORTHO05D004213 2.2e-12 76.6 167 32.3


User provided reference genes

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