Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G39800 Arabidopsis lyrata HOM05D005765 ORTHO05D002313 1.5e-31 138.7 61 100.0
Carub.0007s3455 Capsella rubella HOM05D005765 ORTHO05D002313 1.0e-11 72.8 42 78.6
CARHR213430 Cardamine hirsuta HOM05D005765 ORTHO05D002313 1.0e-11 72.8 42 78.6
Aa31LG9G720 Aethionema arabicum HOM05D005765 ORTHO05D002313 2.3e-11 71.6 42 76.2
AL7G48600 Arabidopsis lyrata HOM05D005765 ORTHO05D002313 5.1e-11 70.5 42 73.8
AT5G40950 Arabidopsis thaliana HOM05D005765 ORTHO05D002313 5.1e-11 70.5 42 73.8
Sp7g00970 Schrenkiella parvula HOM05D005765 ORTHO05D002313 5.1e-11 70.5 42 73.8
Aa31LG1G6890 Aethionema arabicum HOM05D005765 ORTHO05D002313 2.0e-10 68.6 42 71.4
Thhalv10027943m.g Eutrema salsugineum HOM05D005765 ORTHO05D002313 2.6e-10 68.2 42 71.4
arahy.Tifrunner.gnm1.ann1.C2TYHM Arachis hypogaea HOM05D005765 ORTHO05D002313 3.3e-10 67.8 39 76.9
BcaB06g27577 Brassica carinata HOM05D005765 ORTHO05D002313 3.3e-10 67.8 42 69.0
BcaC02g08988 Brassica carinata HOM05D005765 ORTHO05D002313 3.3e-10 67.8 42 69.0
A04p14010 Brassica napus HOM05D005765 ORTHO05D002313 3.3e-10 67.8 42 69.0
C04p48040 Brassica napus HOM05D005765 ORTHO05D002313 3.3e-10 67.8 42 69.0
BolC4t26396H Brassica oleracea HOM05D005765 ORTHO05D002313 3.3e-10 67.8 42 69.0
BraA04t17063Z Brassica rapa HOM05D005765 ORTHO05D002313 3.3e-10 67.8 42 69.0
THA.LOC104825626 Tarenaya hassleriana HOM05D005765 ORTHO05D002313 7.4e-10 66.6 41 70.7
arahy.Tifrunner.gnm1.ann1.9892BY Arachis hypogaea HOM05D005765 ORTHO05D002313 1.7e-09 65.5 36 80.6
arahy.Tifrunner.gnm1.ann1.JYGZ5B Arachis hypogaea HOM05D005765 ORTHO05D002313 1.7e-09 65.5 36 80.6
arahy.Tifrunner.gnm1.ann1.ZMYY1J Arachis hypogaea HOM05D005765 ORTHO05D002313 1.7e-09 65.5 36 80.6
Atru.chr6.2579 Acer truncatum HOM05D005765 ORTHO05D002313 8.2e-09 63.2 38 76.3
MBI11_g24616_MAGBIO Magnolia biondii HOM05D005765 ORTHO05D002313 1.4e-08 62.4 40 70.0
Ah.03g147540 Amaranthus hybridus HOM05D005765 ORTHO05D002313 2.4e-08 61.6 38 73.7
COL.COLO4_13264 Corchorus olitorius HOM05D005765 ORTHO05D002313 2.4e-08 61.6 38 73.7
Gohir.A09G036100 Gossypium hirsutum HOM05D005765 ORTHO05D002313 2.4e-08 61.6 38 73.7
Gohir.D09G037100 Gossypium hirsutum HOM05D005765 ORTHO05D002313 2.4e-08 61.6 38 73.7
Gorai.006G042400 Gossypium raimondii HOM05D005765 ORTHO05D002313 2.4e-08 61.6 38 73.7
AUR62003522 Chenopodium quinoa HOM05D005765 ORTHO05D002313 3.1e-08 61.2 37 75.7
AUR62017836 Chenopodium quinoa HOM05D005765 ORTHO05D002313 3.1e-08 61.2 37 75.7
PSO017G0717 Papaver somniferum HOM05D005765 ORTHO05D002313 3.1e-08 61.2 40 75.0
PSO478G4423 Papaver somniferum HOM05D005765 ORTHO05D002313 3.1e-08 61.2 40 75.0
Hund04356 Selenicereus undatus HOM05D005765 ORTHO05D002313 4.1e-08 60.8 37 75.7
Cc07_g00870 Coffea canephora HOM05D005765 ORTHO05D002313 5.3e-08 60.5 40 70.0
Migut.F00059 Erythranthe guttata HOM05D005765 ORTHO05D002313 5.3e-08 60.5 39 71.8
FvH4_6g53590 Fragaria vesca HOM05D005765 ORTHO05D002313 5.3e-08 60.5 38 73.7
FAN02G1386 Fragaria x ananassa HOM05D005765 ORTHO05D002313 5.3e-08 60.5 38 73.7
FAN05G2595 Fragaria x ananassa HOM05D005765 ORTHO05D002313 5.3e-08 60.5 38 73.7
FAN09G1054 Fragaria x ananassa HOM05D005765 ORTHO05D002313 5.3e-08 60.5 38 73.7
FAN14G1527 Fragaria x ananassa HOM05D005765 ORTHO05D002313 5.3e-08 60.5 38 73.7
Potri.001G329500 Populus trichocarpa HOM05D005765 ORTHO05D002313 5.3e-08 60.5 38 71.1
QL02p071244 Quercus lobata HOM05D005765 ORTHO05D002313 5.3e-08 60.5 35 80.0
Sabra16G0210900 Salix brachista HOM05D005765 ORTHO05D002313 5.3e-08 60.5 38 71.1
Solyc11g068820.3 Solanum lycopersicum HOM05D005765 ORTHO05D002313 5.3e-08 60.5 40 70.0
Sopen11g027540 Solanum pennellii HOM05D005765 ORTHO05D002313 5.3e-08 60.5 40 70.0
PGSC0003DMG400019631 Solanum tuberosum HOM05D005765 ORTHO05D002313 5.3e-08 60.5 40 70.0
TWI34G0325 Tripterygium wilfordii HOM05D005765 ORTHO05D002313 5.3e-08 60.5 36 72.2
TWI34G1681 Tripterygium wilfordii HOM05D005765 ORTHO05D002313 5.3e-08 60.5 36 72.2
Ciclev10016825m.g Citrus clementina HOM05D005765 ORTHO05D002313 6.9e-08 60.1 37 73.0
CAN.G792.8 Capsicum annuum HOM05D005765 ORTHO05D002313 9.1e-08 59.7 34 79.4
CiPaw.04G036800 Carya illinoinensis HOM05D005765 ORTHO05D002313 9.1e-08 59.7 35 77.1
ClCG11G007120 Citrullus lanatus HOM05D005765 ORTHO05D002313 9.1e-08 59.7 40 67.5
MD09G1010200 Malus domestica HOM05D005765 ORTHO05D002313 9.1e-08 59.7 35 77.1
MD17G1000400 Malus domestica HOM05D005765 ORTHO05D002313 9.1e-08 59.7 35 77.1
Oeu005105.1 Olea europaea HOM05D005765 ORTHO05D002313 9.1e-08 59.7 34 79.4
Sed0017038 Sechium edule HOM05D005765 ORTHO05D002313 9.1e-08 59.7 40 67.5
Thecc.04G037800 Theobroma cacao HOM05D005765 ORTHO05D002313 9.1e-08 59.7 38 71.1
unitig_0.g1924 Utricularia gibba HOM05D005765 ORTHO05D002313 9.1e-08 59.7 34 79.4
Sed0006067 Sechium edule HOM05D005765 ORTHO05D002313 1.2e-07 59.3 40 67.5
Cfa007223 Carpinus fangiana HOM05D005765 ORTHO05D002313 1.5e-07 58.9 40 67.5
Haze_14881 Corylus avellana HOM05D005765 ORTHO05D002313 1.5e-07 58.9 40 67.5
Hma1.2p1_1057F.1_g252820 Hydrangea macrophylla HOM05D005765 ORTHO05D002313 1.5e-07 58.9 36 72.2
Nitab4.5_0000559g0370 Nicotiana tabacum HOM05D005765 ORTHO05D002313 1.5e-07 58.9 40 67.5
Nitab4.5_0005161g0040 Nicotiana tabacum HOM05D005765 ORTHO05D002313 1.5e-07 58.9 40 67.5
ATR0561G222 Amborella trichopoda HOM05D005765 ORTHO05D002313 2.0e-07 58.5 40 67.5
MELO3C008191.2 Cucumis melo HOM05D005765 ORTHO05D002313 2.0e-07 58.5 40 65.0
Lsat_1_v5_gn_2_93120 Lactuca sativa HOM05D005765 ORTHO05D002313 2.0e-07 58.5 34 79.4
Duzib187G1674 Durio zibethinus HOM05D005765 ORTHO05D002313 2.6e-07 58.2 38 68.4
Manes.15G161500 Manihot esculenta HOM05D005765 ORTHO05D002313 2.6e-07 58.2 38 68.4
Prupe.3G306900 Prunus persica HOM05D005765 ORTHO05D002313 2.6e-07 58.2 35 74.3
RcHm_v2.0_Chr2g0175661 Rosa chinensis HOM05D005765 ORTHO05D002313 2.6e-07 58.2 38 71.1
SalBow4G0293 Salvia bowleyana HOM05D005765 ORTHO05D002313 2.6e-07 58.2 34 76.5
SalBow4G2955 Salvia bowleyana HOM05D005765 ORTHO05D002313 2.6e-07 58.2 34 76.5
CDE05G1062 Ceratophyllum demersum HOM05D005765 ORTHO05D002313 3.4e-07 57.8 40 67.5
CDE05G3217 Ceratophyllum demersum HOM05D005765 ORTHO05D002313 3.4e-07 57.8 40 67.5
CsaV3_2G034130 Cucumis sativus L. HOM05D005765 ORTHO05D002313 3.4e-07 57.8 40 65.0
Lj3g0012175 Lotus japonicus HOM05D005765 ORTHO05D002313 3.4e-07 57.8 34 76.5
Os01g0924000 Oryza sativa ssp. japonica HOM05D005765 ORTHO05D002313 3.4e-07 57.8 33 81.8
Actinidia04437 Actinidia chinensis HOM05D001420 ORTHO05D009292 4.5e-07 57.4 40 67.5
CANSAT64G0001 Cannabis sativa HOM05D005765 ORTHO05D002313 4.5e-07 57.4 34 76.5
Lj7C610T3 Lonicera japonica HOM05D005765 ORTHO05D002313 4.5e-07 57.4 40 67.5
Lalb_Chr04g0259971 Lupinus albus HOM05D005765 ORTHO05D002313 4.5e-07 57.4 40 67.5
GSVIVG01033086001 Vitis vinifera HOM05D005765 ORTHO05D002313 4.5e-07 57.4 35 74.3
ECA238G0681 Erigeron canadensis HOM05D005765 ORTHO05D002313 5.9e-07 57.0 34 76.5
HPP92_025270 Vanilla planifolia HOM05D005765 ORTHO05D002313 5.9e-07 57.0 40 62.5
CSS0026879 Camellia sinensis var. sinensis HOM05D005765 ORTHO05D002313 1.0e-06 56.2 40 65.0
Cpa.g.sc171.10 Carica papaya HOM05D005765 ORTHO05D002313 1.0e-06 56.2 36 69.4
Lalb_Chr18g0046701 Lupinus albus HOM05D005765 ORTHO05D002313 1.0e-06 56.2 34 76.5
Nn3g16448 Nelumbo nucifera HOM05D005765 ORTHO05D002313 1.0e-06 56.2 40 67.5
Zm00001eb364200 Zea mays HOM05D005765 ORTHO05D002313 1.0e-06 56.2 39 71.8
Glyma.04G139200 Glycine max HOM05D005765 ORTHO05D002313 1.3e-06 55.8 34 73.5
Glyma.11G151300 Glycine max HOM05D005765 ORTHO05D002313 1.3e-06 55.8 34 73.5
TAR374G0284 Trochodendron aralioides HOM05D005765 ORTHO05D002313 1.3e-06 55.8 40 65.0
Peaxi162Scf00700g00029 Petunia axillaris HOM05D005765 ORTHO05D002313 1.7e-06 55.5 33 75.8
Sc03g0006510 Simmondsia chinensis HOM05D005765 ORTHO05D002313 1.7e-06 55.5 40 62.5
Mapoly0027s0011 Marchantia polymorpha HOM05D005765 ORTHO05D002313 2.2e-06 55.1 34 73.5
SEGI_37399 Sequoiadendron giganteum HOM05D005765 ORTHO05D002313 2.2e-06 55.1 39 66.7
Dinv25656 Davidia involucrata HOM05D005765 ORTHO05D002313 2.9e-06 54.7 40 62.5
PGR142G2888 Punica granatum HOM05D005765 ORTHO05D002313 2.9e-06 54.7 37 67.6
vmacro18349 Vaccinium macrocarpon HOM05D005765 ORTHO05D002313 2.9e-06 54.7 34 76.5
Phvul.005G031700 Phaseolus vulgaris HOM05D005765 ORTHO05D002313 3.8e-06 54.3 34 70.6
VMungo1080G1067 Vigna mungo HOM05D005765 ORTHO05D002313 3.8e-06 54.3 34 70.6
Aqoxy3G01560 Aquilegia oxysepala HOM05D005765 ORTHO05D002313 5.0e-06 53.9 33 75.8
Eucgr.I01643 Eucalyptus grandis HOM05D005765 ORTHO05D002313 5.0e-06 53.9 34 73.5
MD00G1153700 Malus domestica HOM05D005765 ORTHO05D002313 6.5e-06 53.5 35 71.4
DCAR_015103 Daucus carota HOM05D005765 ORTHO05D002313 8.5e-06 53.1 34 70.6


User provided reference genes

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