Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G39670 Arabidopsis lyrata HOM05D007260 ORTHO05D009149 3.1e-116 421.8 208 100.0
AT2G41600 Arabidopsis thaliana HOM05D007260 ORTHO05D009149 1.7e-98 362.8 207 85.5
Carub.0004s2386 Capsella rubella HOM05D007260 ORTHO05D009149 8.8e-95 350.5 206 84.0
Sp4g23850 Schrenkiella parvula HOM05D007260 ORTHO05D009149 3.0e-79 298.9 207 73.4
Thhalv10017244m.g Eutrema salsugineum HOM05D007260 ORTHO05D009149 1.2e-78 297.0 208 72.1
CARHR136700 Cardamine hirsuta HOM05D007260 ORTHO05D009149 2.6e-78 295.8 207 69.6
Aa31LG1G23620 Aethionema arabicum HOM05D007260 ORTHO05D009149 1.4e-76 290.0 199 72.4
BcaB06g29191 Brassica carinata HOM05D007260 ORTHO05D009149 3.1e-76 288.9 207 68.6
A04p31710 Brassica napus HOM05D007260 ORTHO05D009149 1.6e-72 276.6 206 67.0
BcaC02g07303 Brassica carinata HOM05D007260 ORTHO05D009149 2.1e-72 276.2 205 66.8
BolC4t28410H Brassica oleracea HOM05D007260 ORTHO05D009149 2.1e-72 276.2 205 66.8
BraA04t18628Z Brassica rapa HOM05D007260 ORTHO05D009149 2.1e-72 276.2 206 66.5
C04p69130 Brassica napus HOM05D007260 ORTHO05D009149 2.0e-70 269.6 205 65.9
THA.LOC104802057 Tarenaya hassleriana HOM05D007260 ORTHO05D009149 3.7e-61 238.8 205 60.0
CANSAT80G0389 Cannabis sativa HOM05D007260 ORTHO05D009149 7.5e-54 214.5 205 50.2
CANSAT80G1528 Cannabis sativa HOM05D007260 ORTHO05D009149 4.9e-53 211.8 205 50.2
CiPaw.10G035100 Carya illinoinensis HOM05D007260 ORTHO05D009149 9.2e-52 207.6 202 50.5
QL07p003043 Quercus lobata HOM05D007260 ORTHO05D009149 2.0e-51 206.5 204 50.0
Ciclev10005732m.g Citrus clementina HOM05D007260 ORTHO05D009149 2.7e-51 206.1 204 49.5
Lj1C1126T6 Lonicera japonica HOM05D007260 ORTHO05D009149 3.5e-51 205.7 204 50.5
Cfa016789 Carpinus fangiana HOM05D007260 ORTHO05D009149 1.7e-50 203.4 200 50.0
arahy.Tifrunner.gnm1.ann1.QMP5TS Arachis hypogaea HOM05D007260 ORTHO05D009149 2.3e-50 203.0 195 51.8
Potri.006G046350 Populus trichocarpa HOM05D007260 ORTHO05D009149 5.0e-50 201.8 200 52.0
arahy.Tifrunner.gnm1.ann1.HX298U Arachis hypogaea HOM05D007260 ORTHO05D009149 1.9e-49 199.9 195 51.3
Sabra06G0031900 Salix brachista HOM05D007260 ORTHO05D009149 2.5e-49 199.5 202 51.0
Oeu023130.1 Olea europaea HOM05D007260 ORTHO05D009149 5.6e-49 198.4 204 46.6
RcHm_v2.0_Chr3g0483391 Rosa chinensis HOM05D007260 ORTHO05D009149 9.5e-49 197.6 200 48.5
vmacro21973 Vaccinium macrocarpon HOM05D007260 ORTHO05D009149 1.2e-48 197.2 203 51.2
GSVIVG01033239001 Vitis vinifera HOM05D007260 ORTHO05D009149 3.6e-48 195.7 202 47.0
Lalb_Chr01g0017381 Lupinus albus HOM05D007260 ORTHO05D009149 4.7e-48 195.3 191 52.4
Cpa.g.sc182.9 Carica papaya HOM05D007260 ORTHO05D009149 8.0e-48 194.5 199 49.2
ECA248G0818 Erigeron canadensis HOM05D007260 ORTHO05D009149 1.4e-47 193.7 204 48.0
SalBow6G2074 Salvia bowleyana HOM05D007260 ORTHO05D009149 6.8e-47 191.4 204 45.1
TWI74G0992 Tripterygium wilfordii HOM05D007260 ORTHO05D009149 1.2e-46 190.7 199 47.7
SalBow6G0663 Salvia bowleyana HOM05D007260 ORTHO05D009149 1.5e-46 190.3 204 45.1
Thecc.05G151300 Theobroma cacao HOM05D007260 ORTHO05D009149 1.5e-46 190.3 199 48.7
Ca_08430_v3 Cicer arietinum L. HOM05D007260 ORTHO05D009149 2.0e-46 189.9 195 47.7
Lj1g0013385 Lotus japonicus HOM05D007260 ORTHO05D009149 2.0e-46 189.9 192 48.4
TAR633G2662 Trochodendron aralioides HOM05D007260 ORTHO05D009149 2.0e-46 189.9 202 46.5
MSTRG.19844 Avicennia marina HOM05D007260 ORTHO05D009149 4.4e-46 188.7 202 46.0
Gorai.003G087400 Gossypium raimondii HOM05D007260 ORTHO05D009149 5.8e-46 188.3 199 48.2
Lsat_1_v5_gn_5_160501 Lactuca sativa HOM05D007260 ORTHO05D009149 5.8e-46 188.3 202 44.6
COL.COLO4_22299 Corchorus olitorius HOM05D007260 ORTHO05D009149 7.5e-46 188.0 200 48.0
Gohir.A02G107109 Gossypium hirsutum HOM05D007260 ORTHO05D009149 7.5e-46 188.0 199 47.7
Gohir.D03G072400 Gossypium hirsutum HOM05D007260 ORTHO05D009149 7.5e-46 188.0 199 48.2
Atru.chr1.1150 Acer truncatum HOM05D007260 ORTHO05D009149 1.3e-45 187.2 199 47.2
FvH4_6g24410 Fragaria vesca HOM05D007260 ORTHO05D009149 1.7e-45 186.8 209 46.4
Cc06_g17880 Coffea canephora HOM05D007260 ORTHO05D009149 2.2e-45 186.4 196 48.0
Duzib106G0310 Durio zibethinus HOM05D007260 ORTHO05D009149 8.3e-45 184.5 199 47.7
MD14G1076800 Malus domestica HOM05D007260 ORTHO05D009149 8.3e-45 184.5 210 47.1
Rhsim03G0028400 Rhododendron simsii HOM05D007260 ORTHO05D009149 1.4e-44 183.7 235 46.4
Eucgr.K01719 Eucalyptus grandis HOM05D007260 ORTHO05D009149 1.9e-44 183.3 202 43.6
ClCG04G003650 Citrullus lanatus HOM05D007260 ORTHO05D009149 2.4e-44 183.0 204 44.6
Nn2g15147 Nelumbo nucifera HOM05D007260 ORTHO05D009149 2.4e-44 183.0 202 44.1
Medtr7g091050 Medicago truncatula HOM05D007260 ORTHO05D009149 1.2e-43 180.6 195 45.6
VMungo1309G2091 Vigna mungo HOM05D007260 ORTHO05D009149 2.1e-43 179.9 185 48.6
Eucgr.K02009 Eucalyptus grandis HOM05D007260 ORTHO05D009149 2.7e-43 179.5 202 44.1
Prupe.7G054700 Prunus persica HOM05D007260 ORTHO05D009149 2.7e-43 179.5 206 47.6
Sc25g0005370 Simmondsia chinensis HOM05D007260 ORTHO05D009149 2.7e-43 179.5 212 43.4
Ah.13g076600 Amaranthus hybridus HOM05D007260 ORTHO05D009149 4.6e-43 178.7 202 46.0
Psat3g074400 Pisum sativum HOM05D007260 ORTHO05D009149 4.6e-43 178.7 195 44.6
Sed0015422 Sechium edule HOM05D007260 ORTHO05D009149 4.6e-43 178.7 206 43.7
Phvul.008G158118 Phaseolus vulgaris HOM05D007260 ORTHO05D009149 6.0e-43 178.3 187 48.1
Glyma.03G134300 Glycine max HOM05D007260 ORTHO05D009149 1.0e-42 177.6 187 46.0
Aqoxy1G00296 Aquilegia oxysepala HOM05D007260 ORTHO05D009149 1.3e-42 177.2 207 44.0
AUR62026087 Chenopodium quinoa HOM05D007260 ORTHO05D009149 3.9e-42 175.6 203 43.3
Migut.J01731 Erythranthe guttata HOM05D007260 ORTHO05D009149 3.9e-42 175.6 202 44.1
FAN02G1162 Fragaria x ananassa HOM05D007260 ORTHO05D009149 3.9e-42 175.6 214 44.9
EL10Ac3g07131 Beta vulgaris HOM05D007260 ORTHO05D009149 6.6e-42 174.9 196 45.4
AUR62024501 Chenopodium quinoa HOM05D007260 ORTHO05D009149 8.6e-42 174.5 184 45.7
Glyma.19G136500 Glycine max HOM05D007260 ORTHO05D009149 7.3e-41 171.4 188 45.7
MBI13_g10219_MAGBIO Magnolia biondii HOM05D007260 ORTHO05D009149 7.3e-41 171.4 180 47.8
TPR.G18237 Trifolium pratense HOM05D007260 ORTHO05D009149 9.5e-41 171.0 202 44.1
DCAR_020507 Daucus carota HOM05D007260 ORTHO05D009149 1.6e-40 170.2 159 52.8
CsaV3_6G012930 Cucumis sativus L. HOM05D007260 ORTHO05D009149 3.6e-40 169.1 203 43.3
Nitab4.5_0000826g0300 Nicotiana tabacum HOM05D007260 ORTHO05D009149 1.8e-39 166.8 207 42.5
Nitab4.5_0006870g0020 Nicotiana tabacum HOM05D007260 ORTHO05D009149 1.8e-39 166.8 205 42.9
SGA_v2.0_scaffold105G30380 Striga asiatica HOM05D007260 ORTHO05D009149 4.0e-39 165.6 202 42.6
CAN.G676.12 Capsicum annuum HOM05D007260 ORTHO05D009149 1.5e-38 163.7 206 41.7
PGSC0003DMG401012695 Solanum tuberosum HOM05D007260 ORTHO05D009149 3.4e-38 162.5 207 41.1
MBI13_g36811_MAGBIO Magnolia biondii HOM05D007260 ORTHO05D009149 3.7e-37 159.1 200 43.0
Manes.09G018400 Manihot esculenta HOM05D007260 ORTHO05D009149 1.1e-36 157.5 192 43.8
HanXRQChr13g0396001 Helianthus annuus HOM05D007260 ORTHO05D009149 3.2e-36 156.0 162 46.3
Sopen04g008360 Solanum pennellii HOM05D007260 ORTHO05D009149 5.4e-36 155.2 204 40.7
PSO782G2785 Papaver somniferum HOM05D007260 ORTHO05D009149 1.2e-35 154.1 207 40.6
Actinidia39206 Actinidia chinensis HOM05D007260 ORTHO05D009149 1.3e-34 150.6 158 51.3
Hund19138 Selenicereus undatus HOM05D007260 ORTHO05D009149 2.5e-33 146.4 201 39.8
Haze_19813 Corylus avellana HOM05D007260 ORTHO05D009149 5.6e-33 145.2 151 49.0
Haze_19810 Corylus avellana HOM05D007260 ORTHO05D009149 2.4e-31 139.8 139 51.1
MBI13_g37004_MAGBIO Magnolia biondii HOM05D007260 ORTHO05D009149 2.2e-29 133.3 183 40.4
MELO3C013619.2 Cucumis melo HOM05D007260 ORTHO05D009149 3.5e-27 125.9 135 47.4
Hma1.2p1_0110F.1_g052790 Hydrangea macrophylla HOM05D007260 ORTHO05D009149 7.8e-27 124.8 106 60.4
Solyc04g016250.3 Solanum lycopersicum HOM05D007260 ORTHO05D009149 1.7e-26 123.6 182 40.1
Peaxi162Scf00130g00720 Petunia axillaris HOM05D007260 ORTHO05D009149 3.0e-26 122.9 144 44.4
unitig_8.g3500 Utricularia gibba HOM05D000800 ORTHO05D000658 5.6e-25 118.6 193 33.7
Dinv02794 Davidia involucrata HOM05D007260 ORTHO05D009149 7.3e-25 118.2 102 58.8
Lj1P1128T41 Lonicera japonica HOM05D007260 ORTHO05D009149 3.6e-24 115.9 111 54.1
Zm00001eb405200 Zea mays HOM05D007260 ORTHO05D009149 1.5e-22 110.5 195 33.8
CSS0011677 Camellia sinensis var. sinensis HOM05D007260 ORTHO05D009149 2.9e-21 106.3 108 45.4
PSO063G4612 Papaver somniferum HOM05D007260 ORTHO05D009149 2.9e-21 106.3 163 35.6
Os11g0140100 Oryza sativa ssp. japonica HOM05D007260 ORTHO05D009149 3.8e-21 105.9 202 32.2
ATR0188G026 Amborella trichopoda HOM05D007260 ORTHO05D009149 4.2e-20 102.4 133 40.6
CDE04G0457 Ceratophyllum demersum HOM05D007260 ORTHO05D009149 1.3e-18 97.4 198 29.3
Pp3c12_23320 Physcomitrium patens HOM05D001009 ORTHO05D000829 8.4e-13 78.2 195 28.2
SEGI_00639 Sequoiadendron giganteum HOM05D007260 ORTHO05D009149 1.4e-12 77.4 131 35.1
SEGI_24189 Sequoiadendron giganteum HOM05D007260 ORTHO05D009149 1.4e-12 77.4 131 35.1
SEGI_29096 Sequoiadendron giganteum HOM05D007260 ORTHO05D009149 1.4e-12 77.4 131 35.1
Os12g0136600 Oryza sativa ssp. japonica HOM05D007260 ORTHO05D009149 1.6e-08 63.9 87 40.2
Ciclev10032528m.g Citrus clementina HOM05D001009 ORTHO05D000829 4.0e-07 59.3 199 26.1
AL1G28030 Arabidopsis lyrata HOM05D001009 ORTHO05D000829 6.9e-07 58.5 191 21.5
DCAR_025580 Daucus carota HOM05D001009 ORTHO05D000829 1.2e-06 57.8 185 23.2
Thhalv10019068m.g Eutrema salsugineum HOM05D001009 ORTHO05D000829 2.0e-06 57.0 191 23.0
SMO197G0050 Selaginella moellendorffii HOM05D001009 ORTHO05D000829 3.4e-06 56.2 161 23.0
AT1G15870 Arabidopsis thaliana HOM05D001009 ORTHO05D000829 5.8e-06 55.5 195 22.6
Migut.I00712 Erythranthe guttata HOM05D001009 ORTHO05D000829 5.8e-06 55.5 192 22.4


User provided reference genes

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