Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G39580 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 4.0e-243 844.3 432 100.0
AT2G41490 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 2.5e-237 825.1 432 97.9
Carub.0004s2379 Capsella rubella HOM05D003740 ORTHO05D004611 3.5e-231 804.7 432 95.8
Sp4g23760 Schrenkiella parvula HOM05D003740 ORTHO05D004611 6.2e-228 793.9 432 94.2
CARHR136610 Cardamine hirsuta HOM05D003740 ORTHO05D004611 2.6e-226 788.5 432 93.5
Thhalv10016688m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 1.9e-224 782.3 434 92.9
AL5G38710 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 2.5e-216 755.4 432 89.8
Carub.0005s2403 Capsella rubella HOM05D003740 ORTHO05D004611 4.2e-216 754.6 432 89.4
BolC4t21915H Brassica oleracea HOM05D003740 ORTHO05D004611 5.5e-216 754.2 432 89.6
AT3G57220 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 1.6e-215 752.7 432 89.6
BraA05t19226Z Brassica rapa HOM05D003740 ORTHO05D004611 1.6e-215 752.7 432 89.8
A05p02310 Brassica napus HOM05D003740 ORTHO05D004611 2.1e-215 752.3 432 89.6
C04p02750 Brassica napus HOM05D003740 ORTHO05D004611 4.6e-215 751.1 432 89.4
BcaNung06793 Brassica carinata HOM05D003740 ORTHO05D004611 2.5e-213 745.3 432 88.7
Aa31LG1G23510 Aethionema arabicum HOM05D003740 ORTHO05D004611 4.3e-213 744.6 430 87.9
C08p32520 Brassica napus HOM05D003740 ORTHO05D004611 5.7e-213 744.2 432 88.9
BolC8t50867H Brassica oleracea HOM05D003740 ORTHO05D004611 1.6e-212 742.7 432 88.7
A09p50150 Brassica napus HOM05D003740 ORTHO05D004611 2.2e-212 742.3 432 88.4
BraA09t40467Z Brassica rapa HOM05D003740 ORTHO05D004611 2.2e-212 742.3 432 88.4
BcaC02g09904 Brassica carinata HOM05D003740 ORTHO05D004611 3.7e-212 741.5 432 87.5
C04p35340 Brassica napus HOM05D003740 ORTHO05D004611 3.7e-212 741.5 432 87.5
BolC4t25088H Brassica oleracea HOM05D003740 ORTHO05D004611 3.7e-212 741.5 432 87.5
Thhalv10005999m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 2.4e-211 738.8 432 88.0
BraA04t16052Z Brassica rapa HOM05D003740 ORTHO05D004611 1.2e-210 736.5 432 88.4
Thhalv10007732m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 4.5e-210 734.6 432 87.5
THA.LOC104803288 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 2.5e-208 728.8 432 87.0
THA.LOC104816968 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 1.4e-206 723.0 432 86.8
BcaB02g08329 Brassica carinata HOM05D003740 ORTHO05D004611 3.0e-206 721.8 432 86.1
Aa31LG10G12120 Aethionema arabicum HOM05D003740 ORTHO05D004611 3.8e-201 704.9 480 78.3
A04p03820 Brassica napus HOM05D003740 ORTHO05D004611 3.8e-193 678.3 432 82.4
TWI77G0796 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 2.6e-186 655.6 432 75.9
TWI53G1619 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 2.9e-185 652.1 432 75.9
Eucgr.A02296 Eucalyptus grandis HOM05D003740 ORTHO05D004611 1.5e-184 649.8 432 75.0
CsaV3_4G027630 Cucumis sativus L. HOM05D003740 ORTHO05D004611 4.2e-184 648.3 432 75.9
MELO3C014202.2 Cucumis melo HOM05D003740 ORTHO05D004611 5.5e-184 647.9 432 75.9
Thecc.05G145300 Theobroma cacao HOM05D003740 ORTHO05D004611 5.5e-184 647.9 432 75.2
ClCG04G004010 Citrullus lanatus HOM05D003740 ORTHO05D004611 7.2e-184 647.5 432 75.2
GSVIVG01033552001 Vitis vinifera HOM05D003740 ORTHO05D004611 6.1e-183 644.4 389 81.5
Prupe.7G050100 Prunus persica HOM05D003740 ORTHO05D004611 1.0e-182 643.7 433 74.6
RcHm_v2.0_Chr3g0484361 Rosa chinensis HOM05D003740 ORTHO05D004611 1.8e-182 642.9 432 75.5
Manes.08G053600 Manihot esculenta HOM05D003740 ORTHO05D004611 3.0e-182 642.1 432 74.3
PGR004G2716 Punica granatum HOM05D003740 ORTHO05D004611 6.7e-182 641.0 432 75.2
Sed0013360 Sechium edule HOM05D003740 ORTHO05D004611 6.7e-182 641.0 432 75.0
TWI74G0940 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 8.8e-182 640.6 432 75.2
Ca_25790_v3 Cicer arietinum L. HOM05D003740 ORTHO05D004611 1.2e-181 640.2 433 75.1
MD12G1086200 Malus domestica HOM05D003740 ORTHO05D004611 1.2e-181 640.2 432 76.2
Lalb_Chr02g0156411 Lupinus albus HOM05D003740 ORTHO05D004611 2.0e-181 639.4 429 75.1
Ciclev10005020m.g Citrus clementina HOM05D003740 ORTHO05D004611 3.3e-181 638.6 432 74.8
Phvul.007G249500 Phaseolus vulgaris HOM05D003740 ORTHO05D004611 3.3e-181 638.6 432 75.0
VMungo0720G0943 Vigna mungo HOM05D003740 ORTHO05D004611 4.4e-181 638.3 432 74.8
Sed0006234 Sechium edule HOM05D003740 ORTHO05D004611 1.3e-180 636.7 433 75.1
MD14G1080600 Malus domestica HOM05D003740 ORTHO05D004611 2.8e-180 635.6 433 75.8
Medtr0012s0090 Medicago truncatula HOM05D003740 ORTHO05D004611 1.4e-179 633.3 432 74.5
Gohir.D09G116000 Gossypium hirsutum HOM05D003740 ORTHO05D004611 2.4e-179 632.5 432 73.8
FvH4_6g24760 Fragaria vesca HOM05D003740 ORTHO05D004611 3.1e-179 632.1 432 73.8
FAN09G1292 Fragaria x ananassa HOM05D003740 ORTHO05D004611 3.1e-179 632.1 432 73.6
Gohir.A09G119800 Gossypium hirsutum HOM05D003740 ORTHO05D004611 3.1e-179 632.1 432 73.8
Dinv34246 Davidia involucrata HOM05D003740 ORTHO05D004611 5.3e-179 631.3 434 74.2
Dinv05312 Davidia involucrata HOM05D003740 ORTHO05D004611 7.0e-179 630.9 432 75.2
Medtr3g045150 Medicago truncatula HOM05D003740 ORTHO05D004611 7.0e-179 630.9 432 74.5
FAN05G1357 Fragaria x ananassa HOM05D003740 ORTHO05D004611 1.2e-178 630.2 432 73.6
Lalb_Chr21g0316601 Lupinus albus HOM05D003740 ORTHO05D004611 2.0e-178 629.4 429 74.6
Psat6g118200 Pisum sativum HOM05D003740 ORTHO05D004611 2.7e-178 629.0 432 73.8
TPR.G19664 Trifolium pratense HOM05D003740 ORTHO05D004611 2.7e-178 629.0 432 74.1
Gorai.006G134300 Gossypium raimondii HOM05D003740 ORTHO05D004611 3.5e-178 628.6 389 78.9
Peaxi162Scf00130g01015 Petunia axillaris HOM05D003740 ORTHO05D004611 4.5e-178 628.2 433 73.7
Prupe.1G032300 Prunus persica HOM05D003740 ORTHO05D004611 1.3e-177 626.7 432 72.9
Lj5g0015883 Lotus japonicus HOM05D003740 ORTHO05D004611 1.7e-177 626.3 432 72.7
Cfa016754 Carpinus fangiana HOM05D003740 ORTHO05D004611 2.2e-177 625.9 434 73.5
Glyma.10G105900 Glycine max HOM05D003740 ORTHO05D004611 2.2e-177 625.9 436 73.2
Haze_19750 Corylus avellana HOM05D003740 ORTHO05D004611 2.9e-177 625.5 434 73.7
Glyma.02G190700 Glycine max HOM05D003740 ORTHO05D004611 3.8e-177 625.2 432 73.8
Sopen04g008590 Solanum pennellii HOM05D003740 ORTHO05D004611 6.5e-177 624.4 432 72.5
Ah.13g076780 Amaranthus hybridus HOM05D003740 ORTHO05D004611 1.5e-176 623.2 432 73.6
RcHm_v2.0_Chr3g0484511 Rosa chinensis HOM05D003740 ORTHO05D004611 2.5e-176 622.5 432 74.1
Migut.K00119 Erythranthe guttata HOM05D003740 ORTHO05D004611 1.6e-175 619.8 434 72.8
QL07p005086 Quercus lobata HOM05D003740 ORTHO05D004611 2.1e-175 619.4 384 79.4
arahy.Tifrunner.gnm1.ann1.0DR8LC Arachis hypogaea HOM05D003740 ORTHO05D004611 4.7e-175 618.2 389 78.1
EL10Ac3g07158 Beta vulgaris HOM05D003740 ORTHO05D004611 4.7e-175 618.2 433 73.4
Actinidia39193 Actinidia chinensis HOM05D003740 ORTHO05D004611 6.1e-175 617.8 432 72.7
CSS0019779 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 6.1e-175 617.8 397 77.6
Atru.chr6.1381 Acer truncatum HOM05D003740 ORTHO05D004611 8.0e-175 617.5 432 72.5
CiPaw.09G042200 Carya illinoinensis HOM05D003740 ORTHO05D004611 1.4e-174 616.7 435 73.8
MSTRG.10801 Avicennia marina HOM05D003740 ORTHO05D004611 4.0e-174 615.1 432 72.5
Sabra16G0047800 Salix brachista HOM05D003740 ORTHO05D004611 4.0e-174 615.1 389 76.9
arahy.Tifrunner.gnm1.ann1.G7Z7YE Arachis hypogaea HOM05D003740 ORTHO05D004611 6.8e-174 614.4 390 77.9
Solyc04g016520.3 Solanum lycopersicum HOM05D003740 ORTHO05D004611 6.8e-174 614.4 432 71.8
FAN02G1973 Fragaria x ananassa HOM05D003740 ORTHO05D004611 1.2e-173 613.6 409 74.3
Actinidia38142 Actinidia chinensis HOM05D003740 ORTHO05D004611 1.5e-173 613.2 434 72.1
MSTRG.26143 Avicennia marina HOM05D003740 ORTHO05D004611 4.4e-173 611.7 432 72.0
PSO339G5696 Papaver somniferum HOM05D003740 ORTHO05D004611 4.4e-173 611.7 385 77.4
PSO384G1999 Papaver somniferum HOM05D003740 ORTHO05D004611 4.4e-173 611.7 385 77.4
HanXRQChr10g0277771 Helianthus annuus HOM05D003740 ORTHO05D004611 7.5e-173 610.9 432 72.9
Rhsim03G0031000 Rhododendron simsii HOM05D003740 ORTHO05D004611 7.5e-173 610.9 389 77.1
PGSC0003DMG400012722 Solanum tuberosum HOM05D003740 ORTHO05D004611 2.8e-172 609.0 432 71.5
Potri.006G045700 Populus trichocarpa HOM05D003740 ORTHO05D004611 6.3e-172 607.8 389 75.8
Nn6g34910 Nelumbo nucifera HOM05D003740 ORTHO05D004611 1.1e-171 607.1 389 76.6
CANSAT80G1617 Cannabis sativa HOM05D003740 ORTHO05D004611 1.4e-171 606.7 432 71.1
Migut.J01706 Erythranthe guttata HOM05D003740 ORTHO05D004611 1.8e-171 606.3 432 71.1
BcaC07g40064 Brassica carinata HOM05D003740 ORTHO05D004611 2.4e-171 605.9 322 94.1
Duzib128G1723 Durio zibethinus HOM05D003740 ORTHO05D004611 3.1e-171 605.5 412 74.0
Nn7g37216 Nelumbo nucifera HOM05D003740 ORTHO05D004611 4.1e-171 605.1 389 76.6
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 2.3e-169 599.4 377 78.8
CANSAT80G1359 Cannabis sativa HOM05D003740 ORTHO05D004611 5.0e-169 598.2 432 70.1
Sc13g0001500 Simmondsia chinensis HOM05D003740 ORTHO05D004611 6.6e-169 597.8 416 72.8
unitig_748.g7227 Utricularia gibba HOM05D003740 ORTHO05D004611 6.6e-169 597.8 412 72.8
Oeu006922.2 Olea europaea HOM05D003740 ORTHO05D004611 8.6e-169 597.4 432 71.1
Lsat_1_v5_gn_6_15201 Lactuca sativa HOM05D003740 ORTHO05D004611 1.1e-168 597.0 412 73.8
SGA_v2.0_scaffold105G30359 Striga asiatica HOM05D003740 ORTHO05D004611 5.5e-168 594.7 412 74.5
TAR636G0750 Trochodendron aralioides HOM05D003740 ORTHO05D004611 7.2e-168 594.3 396 75.5
AUR62024529 Chenopodium quinoa HOM05D003740 ORTHO05D004611 1.2e-167 593.6 435 71.0
DCAR_020539 Daucus carota HOM05D003740 ORTHO05D004611 1.2e-167 593.6 426 71.8
FAN14G5242 Fragaria x ananassa HOM05D003740 ORTHO05D004611 1.6e-167 593.2 414 72.7
Atru.chr1.1193 Acer truncatum HOM05D003740 ORTHO05D004611 8.0e-167 590.9 402 74.4
AUR62026121 Chenopodium quinoa HOM05D003740 ORTHO05D004611 8.0e-167 590.9 435 71.3
MBI13_g04792_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 2.3e-166 589.3 412 73.8
CDE08G1337 Ceratophyllum demersum HOM05D003740 ORTHO05D004611 2.0e-165 586.3 354 80.8
Cc06_g18360 Coffea canephora HOM05D003740 ORTHO05D004611 3.4e-165 585.5 369 77.5
CSS0009879 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 2.8e-164 582.4 433 70.7
Potri.016G042100 Populus trichocarpa HOM05D003740 ORTHO05D004611 2.8e-164 582.4 371 76.0
Aqoxy2G02041 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 3.1e-163 578.9 434 67.7
Rhsim04G0107900 Rhododendron simsii HOM05D003740 ORTHO05D004611 1.6e-162 576.6 384 75.8
CAN.G1237.3 Capsicum annuum HOM05D003740 ORTHO05D004611 1.1e-160 570.5 335 82.4
CARHR167400 Cardamine hirsuta HOM05D003740 ORTHO05D004611 3.3e-160 568.9 337 87.8
SEGI_04340 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 9.5e-160 567.4 415 68.9
COL.COLO4_21300 Corchorus olitorius HOM05D003740 ORTHO05D004611 1.4e-158 563.5 379 74.9
Lj2A390G27 Lonicera japonica HOM05D003740 ORTHO05D004611 4.0e-158 562.0 419 70.9
Duzib106G0923 Durio zibethinus HOM05D003740 ORTHO05D004611 8.9e-158 560.8 432 68.3
Lj1A1122T44 Lonicera japonica HOM05D003740 ORTHO05D004611 1.2e-157 560.5 433 68.1
Nitab4.5_0000826g0260 Nicotiana tabacum HOM05D003740 ORTHO05D004611 1.3e-156 557.0 444 65.3
TPR.G2316 Trifolium pratense HOM05D003740 ORTHO05D004611 4.9e-156 555.1 389 71.5
Zm00001eb110840 Zea mays HOM05D003740 ORTHO05D004611 6.6e-153 544.7 432 64.4
Zm00001eb329870 Zea mays HOM05D003740 ORTHO05D004611 8.6e-153 544.3 400 68.2
Os07g0661100 Oryza sativa ssp. japonica HOM05D003740 ORTHO05D004611 1.5e-152 543.5 368 70.9
SalBow1G2954 Salvia bowleyana HOM05D003740 ORTHO05D004611 4.9e-148 528.5 463 62.0
TAR633G2274 Trochodendron aralioides HOM05D003740 ORTHO05D004611 2.3e-145 519.6 315 81.9
SMO364G0515 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 1.9e-144 516.5 387 65.9
Hund19125 Selenicereus undatus HOM05D003740 ORTHO05D004611 3.1e-142 509.2 463 60.9
DCAR_016970 Daucus carota HOM05D003740 ORTHO05D004611 1.7e-140 503.4 421 64.4
ATR0782G053 Amborella trichopoda HOM05D003740 ORTHO05D004611 4.9e-140 501.9 337 75.7
RcHm_v2.0_Chr3g0484421 Rosa chinensis HOM05D003740 ORTHO05D004611 4.1e-139 498.8 416 65.1
Pp3c2_18380 Physcomitrium patens HOM05D003740 ORTHO05D004611 2.1e-138 496.5 432 61.1
AagrBONN_evm.TU.Sc2ySwM_344.2027 Anthoceros agrestis HOM05D003740 ORTHO05D004611 8.9e-134 481.1 377 63.7
Medtr8g446850 Medicago truncatula HOM05D003740 ORTHO05D004611 2.9e-132 476.1 372 67.5
Mapoly0120s0027 Marchantia polymorpha HOM05D003740 ORTHO05D004611 7.1e-131 471.5 363 63.9
SHI12878 Sapria himalayana HOM05D003740 ORTHO05D004611 3.1e-126 456.1 389 60.4
TPR.G11551 Trifolium pratense HOM05D003740 ORTHO05D004611 2.1e-122 443.4 394 62.4
AUR62004393 Chenopodium quinoa HOM05D003740 ORTHO05D004611 8.7e-121 438.0 347 66.3
Sp5g05360 Schrenkiella parvula HOM05D003740 ORTHO05D004611 2.1e-119 433.3 231 93.5
vmacro09044 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 6.0e-114 415.2 241 84.6
AUR62022599 Chenopodium quinoa HOM05D003740 ORTHO05D004611 4.3e-112 409.1 335 65.1
SMO112G0012 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 4.5e-109 399.1 271 72.7
Cre16.g663100 Chlamydomonas reinhardtii HOM05D003740 ORTHO05D004611 2.3e-97 360.1 390 50.3
AagrBONN_evm.TU.Sc2ySwM_368.1663 Anthoceros agrestis HOM05D003740 ORTHO05D004611 3.0e-97 359.8 401 49.4
CiPaw.10G036600 Carya illinoinensis HOM05D003740 ORTHO05D004611 3.0e-97 359.8 211 84.4
PRCOL_00006546 Prasinoderma coloniale HOM05D003740 ORTHO05D004611 5.1e-89 332.4 390 48.7
CBR_g48687 Chara braunii HOM05D003740 ORTHO05D004611 2.2e-84 317.0 273 59.0
SEGI_25729 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 6.3e-79 298.9 196 74.5
SGA_v2.0_scaffold69G23130 Striga asiatica HOM05D003740 ORTHO05D004611 1.1e-75 288.1 358 52.2
Cpa.g.sc120.7 Carica papaya HOM05D003740 ORTHO05D004611 5.0e-68 262.7 151 83.4
MCO05G206 Micromonas commoda HOM05D003740 ORTHO05D004611 3.4e-64 250.0 302 46.7
Haze_26500 Corylus avellana HOM05D003740 ORTHO05D004611 4.8e-63 246.1 397 38.5
Aqoxy6G01654 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 1.3e-60 238.0 222 58.1
HPP92_001282 Vanilla planifolia HOM05D003740 ORTHO05D004611 6.3e-55 219.2 214 55.1
Cfa024885 Carpinus fangiana HOM05D003740 ORTHO05D004611 3.8e-52 209.9 304 40.5
Psat6g050760 Pisum sativum HOM05D003740 ORTHO05D018044 1.2e-48 198.4 120 80.0
AagrBONN_evm.TU.Sc2ySwM_117.4057 Anthoceros agrestis HOM05D003740 ORTHO05D004611 1.1e-46 191.8 182 56.6
Actinidia17677 Actinidia chinensis HOM05D003740 ORTHO05D004611 8.6e-44 182.2 433 33.7
BNapus_Darmor_BZH_scaffold_38p00040 Brassica napus HOM05D003740 ORTHO05D027079 2.1e-34 151.0 128 67.2
Cpa.g.c37387 Carica papaya HOM05D003740 ORTHO05D004611 7.5e-32 142.5 138 53.6
BcaC09g48688 Brassica carinata HOM05D003740 ORTHO05D027079 3.2e-30 137.1 129 60.5
MBI05_g15360_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 1.6e-26 124.8 72 84.7
vmacro09045 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 3.6e-26 123.6 75 78.7
TPR.G13517 Trifolium pratense HOM05D003740 ORTHO05D027079 7.1e-22 109.4 85 61.2
SMO112G0048 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 1.3e-20 105.1 75 66.7
BcaNung06569 Brassica carinata HOM05D003740 ORTHO05D027079 3.0e-20 104.0 91 69.2
Psat6g009800 Pisum sativum HOM05D003740 ORTHO05D004611 7.3e-19 99.4 61 70.5
BcaC02g11255 Brassica carinata HOM05D003740 ORTHO05D015230 1.6e-18 98.2 74 70.3
Nitab4.5_0001618g0330 Nicotiana tabacum HOM05D003740 ORTHO05D004611 1.7e-15 88.2 54 74.1
TPR.G40499 Trifolium pratense HOM05D003740 ORTHO05D004611 2.7e-13 80.9 60 65.0
Pp3c1_19750 Physcomitrium patens HOM05D003740 ORTHO05D004611 8.7e-12 75.9 123 39.8
A03p42520 Brassica napus HOM05D024621 ORTHO05D015230 2.6e-08 64.3 55 63.6
TPR.G2297 Trifolium pratense HOM05D003740 ORTHO05D411092 3.4e-08 63.9 138 35.5
BolC4t23402H Brassica oleracea HOM05D003740 ORTHO05D015230 1.7e-07 61.6 35 80.0


User provided reference genes

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