Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G39170 Arabidopsis lyrata HOM05D007488 ORTHO05D009461 1.9e-84 315.8 162 100.0
AT2G41200 Arabidopsis thaliana HOM05D007488 ORTHO05D009461 2.5e-81 305.4 162 95.7
Sp4g23500 Schrenkiella parvula HOM05D007488 ORTHO05D009461 5.8e-78 294.3 162 92.0
CARHR136300 Cardamine hirsuta HOM05D007488 ORTHO05D009461 2.9e-77 292.0 162 92.0
BcaB01g03485 Brassica carinata HOM05D007488 ORTHO05D009461 4.9e-77 291.2 162 89.5
Thhalv10017345m.g Eutrema salsugineum HOM05D007488 ORTHO05D009461 6.4e-77 290.8 162 90.7
A03p23120 Brassica napus HOM05D007488 ORTHO05D009461 3.2e-76 288.5 162 88.9
BraA03t11533Z Brassica rapa HOM05D007488 ORTHO05D009461 3.2e-76 288.5 162 88.9
BcaC01g05355 Brassica carinata HOM05D007488 ORTHO05D009461 6.0e-75 284.3 162 87.7
C03p27550 Brassica napus HOM05D007488 ORTHO05D009461 6.0e-75 284.3 162 87.7
BolC3t15128H Brassica oleracea HOM05D007488 ORTHO05D009461 6.0e-75 284.3 162 87.7
Carub.0004s2351 Capsella rubella HOM05D007488 ORTHO05D009461 6.7e-66 254.2 141 89.4
BcaC02g12760 Brassica carinata HOM05D007488 ORTHO05D009461 2.4e-55 219.2 161 73.9
THA.LOC104803261 Tarenaya hassleriana HOM05D007488 ORTHO05D009461 5.9e-54 214.5 165 67.9
Cpa.g.sc5.171 Carica papaya HOM05D007488 ORTHO05D009461 4.2e-44 181.8 165 57.0
Manes.09G005400 Manihot esculenta HOM05D007488 ORTHO05D009461 4.1e-39 165.2 163 52.8
PGR142G4416 Punica granatum HOM05D007488 ORTHO05D009461 9.1e-39 164.1 163 50.9
TWI74G0203 Tripterygium wilfordii HOM05D007488 ORTHO05D009461 1.0e-37 160.6 146 52.7
Lsat_1_v5_gn_5_157940 Lactuca sativa HOM05D007488 ORTHO05D009461 1.7e-37 159.8 151 52.3
Cc06_g19180 Coffea canephora HOM05D007488 ORTHO05D009461 2.9e-37 159.1 162 51.2
Ciclev10006109m.g Citrus clementina HOM05D007488 ORTHO05D009461 3.8e-37 158.7 163 49.7
Eucgr.A02247 Eucalyptus grandis HOM05D007488 ORTHO05D009461 9.4e-36 154.1 165 46.7
HanXRQChr03g0061531 Helianthus annuus HOM05D007488 ORTHO05D009461 9.4e-36 154.1 162 47.5
Rhsim03G0039700 Rhododendron simsii HOM05D007488 ORTHO05D009461 2.1e-35 152.9 163 49.7
Actinidia01825 Actinidia chinensis HOM05D007488 ORTHO05D009461 2.7e-35 152.5 163 49.1
Aa31LG3G800 Aethionema arabicum HOM05D007488 ORTHO05D009461 1.8e-34 149.8 83 90.4
ECA248G2641 Erigeron canadensis HOM05D007488 ORTHO05D009461 1.8e-34 149.8 151 49.0
Haze_15889 Corylus avellana HOM05D007488 ORTHO05D009461 2.3e-34 149.4 166 48.2
Migut.K00133 Erythranthe guttata HOM05D007488 ORTHO05D009461 2.3e-34 149.4 162 48.1
MD14G1087900 Malus domestica HOM05D007488 ORTHO05D009461 3.9e-34 148.7 163 49.1
Prupe.7G038600 Prunus persica HOM05D007488 ORTHO05D009461 3.9e-34 148.7 186 44.1
Nn4g25823 Nelumbo nucifera HOM05D007488 ORTHO05D009461 1.1e-33 147.1 151 53.0
SalBow1G5076 Salvia bowleyana HOM05D007488 ORTHO05D009461 1.1e-33 147.1 162 46.9
SalBow1G6194 Salvia bowleyana HOM05D007488 ORTHO05D009461 1.1e-33 147.1 162 46.9
Sc18g0003830 Simmondsia chinensis HOM05D007488 ORTHO05D009461 1.1e-33 147.1 145 49.0
Psat3g078680 Pisum sativum HOM05D007488 ORTHO05D009461 1.5e-33 146.7 163 49.1
Cfa003623 Carpinus fangiana HOM05D007488 ORTHO05D009461 2.0e-33 146.4 163 47.9
Atru.chr1.1442 Acer truncatum HOM05D007488 ORTHO05D009461 1.3e-32 143.7 165 46.7
C04p02520 Brassica napus HOM05D007488 ORTHO05D009461 1.3e-32 143.7 96 78.1
CiPaw.09G047600 Carya illinoinensis HOM05D007488 ORTHO05D009461 1.3e-32 143.7 163 46.6
DCAR_016880 Daucus carota HOM05D007488 ORTHO05D009461 1.3e-32 143.7 164 48.2
Medtr7g089940 Medicago truncatula HOM05D007488 ORTHO05D009461 3.7e-32 142.1 163 46.6
QL07p010346 Quercus lobata HOM05D007488 ORTHO05D009461 3.7e-32 142.1 161 44.7
MSTRG.19810 Avicennia marina HOM05D007488 ORTHO05D009461 4.8e-32 141.7 162 45.1
Ca_08393_v3 Cicer arietinum L. HOM05D007488 ORTHO05D009461 4.8e-32 141.7 163 47.2
Thecc.05G135000 Theobroma cacao HOM05D007488 ORTHO05D009461 1.1e-31 140.6 162 50.0
Dinv09710 Davidia involucrata HOM05D007488 ORTHO05D009461 5.3e-31 138.3 163 46.0
CANSAT64G0776 Cannabis sativa HOM05D007488 ORTHO05D009461 7.0e-31 137.9 167 45.5
Duzib106G1788 Durio zibethinus HOM05D007488 ORTHO05D009461 7.0e-31 137.9 162 48.1
TPR.G30624 Trifolium pratense HOM05D007488 ORTHO05D009461 7.0e-31 137.9 163 46.6
BolC4t21895H Brassica oleracea HOM05D007488 ORTHO05D009461 1.2e-30 137.1 82 84.1
Peaxi162Scf00076g00524 Petunia axillaris HOM05D007488 ORTHO05D009461 1.6e-30 136.7 151 45.0
Potri.006G038600 Populus trichocarpa HOM05D007488 ORTHO05D009461 2.0e-30 136.3 118 58.5
AUR62030320 Chenopodium quinoa HOM05D007488 ORTHO05D009461 3.5e-30 135.6 165 44.2
EL10Ac3g07236 Beta vulgaris HOM05D007488 ORTHO05D009461 1.3e-29 133.7 163 48.5
AUR62018346 Chenopodium quinoa HOM05D007488 ORTHO05D009461 3.2e-28 129.0 165 44.2
Gohir.A11G307200 Gossypium hirsutum HOM05D007488 ORTHO05D009461 3.2e-28 129.0 152 47.4
Lalb_Chr22g0357421 Lupinus albus HOM05D007488 ORTHO05D009461 3.2e-28 129.0 164 48.8
Gohir.D11G322700 Gossypium hirsutum HOM05D007488 ORTHO05D009461 4.2e-28 128.6 152 46.7
Hund19096 Selenicereus undatus HOM05D007488 ORTHO05D009461 5.5e-28 128.3 164 44.5
CAN.G317.6 Capsicum annuum HOM05D007488 ORTHO05D009461 7.2e-28 127.9 162 41.4
Nitab4.5_0001937g0020 Nicotiana tabacum HOM05D007488 ORTHO05D009461 7.2e-28 127.9 163 42.9
SGA_v2.0_scaffold94G28540 Striga asiatica HOM05D007488 ORTHO05D009461 1.6e-27 126.7 152 44.7
Sopen03g012080 Solanum pennellii HOM05D007488 ORTHO05D009461 2.1e-27 126.3 162 40.7
Gorai.007G352800 Gossypium raimondii HOM05D007488 ORTHO05D009461 3.6e-27 125.6 152 45.4
Lj1g0022068 Lotus japonicus HOM05D007488 ORTHO05D009461 3.6e-27 125.6 165 43.0
Nitab4.5_0000424g0040 Nicotiana tabacum HOM05D007488 ORTHO05D009461 4.7e-27 125.2 142 45.1
arahy.Tifrunner.gnm1.ann1.8RZU3Q Arachis hypogaea HOM05D007488 ORTHO05D009461 8.0e-27 124.4 169 42.6
Nitab4.5_0000812g0120 Nicotiana tabacum HOM05D007488 ORTHO05D009461 8.0e-27 124.4 166 42.2
Nitab4.5_0006279g0050 Nicotiana tabacum HOM05D007488 ORTHO05D009461 8.0e-27 124.4 148 43.9
TAR369G0408 Trochodendron aralioides HOM05D007488 ORTHO05D009461 1.4e-26 123.6 175 42.9
Ah.04g150940 Amaranthus hybridus HOM05D007488 ORTHO05D009461 4.0e-26 122.1 107 58.9
arahy.Tifrunner.gnm1.ann1.Z4B7ZU Arachis hypogaea HOM05D007488 ORTHO05D009461 5.2e-26 121.7 169 42.0
PSO339G1058 Papaver somniferum HOM05D007488 ORTHO05D009461 1.1e-25 120.6 163 39.9
Aqoxy2G00394 Aquilegia oxysepala HOM05D007488 ORTHO05D009461 2.2e-24 116.3 191 37.7
Glyma.19G130600 Glycine max HOM05D007488 ORTHO05D009461 2.2e-24 116.3 158 39.9
VMungo1383G0792 Vigna mungo HOM05D007488 ORTHO05D009461 2.2e-24 116.3 158 41.8
Phvul.001G123700 Phaseolus vulgaris HOM05D007488 ORTHO05D009461 1.1e-23 114.0 168 39.9
A05p02110 Brassica napus HOM05D007488 ORTHO05D009461 5.3e-23 111.7 94 66.0
BraA05t19207Z Brassica rapa HOM05D007488 ORTHO05D009461 5.3e-23 111.7 94 66.0
FAN05G4359 Fragaria x ananassa HOM05D007488 ORTHO05D009461 7.0e-23 111.3 190 40.0
Oeu063781.2 Olea europaea HOM05D004518 ORTHO05D005434 7.0e-23 111.3 115 45.2
Glyma.03G128000 Glycine max HOM05D007488 ORTHO05D009461 3.5e-22 109.0 158 38.0
RcHm_v2.0_Chr2g0164041 Rosa chinensis HOM05D007488 ORTHO05D009461 1.0e-21 107.5 160 38.8
FvH4_6g45840 Fragaria vesca HOM05D007488 ORTHO05D009461 1.3e-21 107.1 177 37.9
FAN02G3897 Fragaria x ananassa HOM05D007488 ORTHO05D009461 1.1e-20 104.0 190 37.9
Sopen10g029120 Solanum pennellii HOM05D000484 ORTHO05D000346 3.2e-20 102.4 132 42.4
Lj1P1093T64 Lonicera japonica HOM05D007488 ORTHO05D009461 7.2e-20 101.3 83 53.0
GSVIVG01033626001 Vitis vinifera HOM05D007488 ORTHO05D009461 4.4e-17 92.0 119 39.5
Peaxi162Scf00701g00057 Petunia axillaris HOM05D007488 ORTHO05D009461 4.8e-16 88.6 87 50.6
FAN14G1565 Fragaria x ananassa HOM05D007488 ORTHO05D009461 1.1e-15 87.4 79 57.0
PSO384G4473 Papaver somniferum HOM05D007488 ORTHO05D009461 9.1e-15 84.3 116 39.7
CDE09G0800 Ceratophyllum demersum HOM05D007488 ORTHO05D009461 1.6e-14 83.6 165 33.3
MBI18_g37945_MAGBIO Magnolia biondii HOM05D007488 ORTHO05D009461 1.0e-10 70.9 145 33.8
Solyc03g058440.1 Solanum lycopersicum HOM05D007488 ORTHO05D009461 1.8e-10 70.1 67 53.7
FAN09G2471 Fragaria x ananassa HOM05D007488 ORTHO05D009461 6.8e-10 68.2 158 31.6


User provided reference genes

Program Settings