Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G39130 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 2.7e-155 552.0 288 100.0
AT2G41160 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 4.4e-153 544.7 288 98.3
Carub.0004s2347 Capsella rubella HOM05D004518 ORTHO05D005434 4.9e-144 514.6 288 92.7
CARHR136250 Cardamine hirsuta HOM05D004518 ORTHO05D005434 1.3e-141 506.5 288 91.7
Thhalv10017035m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 1.8e-138 496.1 289 89.6
Sp4g23460 Schrenkiella parvula HOM05D004518 ORTHO05D005434 1.2e-137 493.4 289 89.6
BraA05t19203Z Brassica rapa HOM05D004518 ORTHO05D005434 6.2e-131 471.1 291 83.8
BolC4t21891H Brassica oleracea HOM05D004518 ORTHO05D005434 3.4e-129 465.3 292 83.2
BcaC02g12756 Brassica carinata HOM05D004518 ORTHO05D005434 4.1e-127 458.4 333 75.1
C04p02460 Brassica napus HOM05D004518 ORTHO05D005434 6.6e-125 451.1 284 82.7
Sp5g05830 Schrenkiella parvula HOM05D004518 ORTHO05D005434 2.5e-124 449.1 293 80.5
A05p02070 Brassica napus HOM05D004518 ORTHO05D005434 3.3e-124 448.7 283 82.7
AT3G56740 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 4.7e-123 444.9 294 80.3
BcaC07g40121 Brassica carinata HOM05D004518 ORTHO05D005434 8.1e-123 444.1 294 80.3
Thhalv10006131m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 1.8e-122 443.0 294 80.6
Aa31LG10G11580 Aethionema arabicum HOM05D004518 ORTHO05D005434 1.2e-121 440.3 294 79.9
AL5G38100 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 3.4e-121 438.7 294 79.3
Carub.0005s2348 Capsella rubella HOM05D004518 ORTHO05D005434 1.3e-120 436.8 294 78.9
BcaC07g39982 Brassica carinata HOM05D004518 ORTHO05D005434 2.2e-120 436.0 294 79.3
CARHR166870 Cardamine hirsuta HOM05D004518 ORTHO05D005434 1.1e-119 433.7 294 77.9
Aa31LG3G900 Aethionema arabicum HOM05D004518 ORTHO05D005434 1.6e-118 429.9 306 75.8
A09p49580 Brassica napus HOM05D004518 ORTHO05D005434 2.1e-118 429.5 306 76.5
BraA09t40411Z Brassica rapa HOM05D004518 ORTHO05D005434 2.1e-118 429.5 306 76.5
Aa31LG3G910 Aethionema arabicum HOM05D004518 ORTHO05D005434 2.7e-118 429.1 288 79.2
BolC8t50814H Brassica oleracea HOM05D004518 ORTHO05D005434 7.8e-118 427.6 306 76.1
THA.LOC104824396 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 6.2e-115 417.9 296 74.7
THA.LOC104803258 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 2.4e-114 416.0 296 75.3
C08p31960 Brassica napus HOM05D004518 ORTHO05D005434 2.0e-113 412.9 305 74.4
Dinv05720 Davidia involucrata HOM05D004518 ORTHO05D005434 4.6e-110 401.7 296 71.6
Atru.chr1.1396 Acer truncatum HOM05D004518 ORTHO05D005434 6.0e-110 401.4 293 71.3
RcHm_v2.0_Chr2g0125741 Rosa chinensis HOM05D004518 ORTHO05D005434 6.0e-110 401.4 293 71.7
Potri.006G040100 Populus trichocarpa HOM05D004518 ORTHO05D005434 7.8e-110 401.0 296 71.3
TWI53G0703 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 3.0e-109 399.1 292 72.3
Dinv03206 Davidia involucrata HOM05D004518 ORTHO05D005434 1.1e-108 397.1 294 71.4
CiPaw.10G040700 Carya illinoinensis HOM05D004518 ORTHO05D005434 2.5e-108 396.0 293 71.7
ClCG10G013700 Citrullus lanatus HOM05D004518 ORTHO05D005434 2.5e-108 396.0 293 70.0
COL.COLO4_07077 Corchorus olitorius HOM05D004518 ORTHO05D005434 2.5e-108 396.0 293 72.7
CANSAT64G1638 Cannabis sativa HOM05D004518 ORTHO05D005434 3.3e-108 395.6 291 72.5
Hma1.2p1_0252F.1_g102810 Hydrangea macrophylla HOM05D004518 ORTHO05D005434 3.3e-108 395.6 297 70.4
Gohir.D13G001500 Gossypium hirsutum HOM05D004518 ORTHO05D005434 7.3e-108 394.4 297 71.0
Gorai.013G001400 Gossypium raimondii HOM05D004518 ORTHO05D005434 7.3e-108 394.4 297 71.0
Sed0017951 Sechium edule HOM05D004518 ORTHO05D005434 7.3e-108 394.4 289 70.9
Cfa019996 Carpinus fangiana HOM05D004518 ORTHO05D005434 9.6e-108 394.0 293 70.6
CsaV3_3G042950 Cucumis sativus L. HOM05D004518 ORTHO05D005434 1.6e-107 393.3 293 70.3
MELO3C026597.2 Cucumis melo HOM05D004518 ORTHO05D005434 2.1e-107 392.9 292 69.9
FAN05G1433 Fragaria x ananassa HOM05D004518 ORTHO05D005434 2.1e-107 392.9 293 70.0
TWI77G0289 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 2.8e-107 392.5 288 70.8
Thecc.05G127700 Theobroma cacao HOM05D004518 ORTHO05D005434 3.6e-107 392.1 297 70.4
MD14G1089500 Malus domestica HOM05D004518 ORTHO05D005434 4.8e-107 391.7 293 69.3
Sed0000448 Sechium edule HOM05D004518 ORTHO05D005434 4.8e-107 391.7 293 68.9
TWI74G1405 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 4.8e-107 391.7 292 71.9
Lalb_Chr24g0400371 Lupinus albus HOM05D004518 ORTHO05D005434 8.1e-107 391.0 293 70.0
CSS0002759 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 1.8e-106 389.8 297 69.4
CSS0023469 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 1.8e-106 389.8 297 69.4
Prupe.7G034400 Prunus persica HOM05D004518 ORTHO05D005434 3.1e-106 389.0 293 70.3
Phvul.001G121800 Phaseolus vulgaris HOM05D004518 ORTHO05D005434 1.2e-105 387.1 296 68.2
FvH4_6g25340 Fragaria vesca HOM05D004518 ORTHO05D005434 1.5e-105 386.7 293 68.9
Lalb_Chr14g0365751 Lupinus albus HOM05D004518 ORTHO05D005434 2.0e-105 386.3 296 67.9
Glyma.03G126400 Glycine max HOM05D004518 ORTHO05D005434 3.4e-105 385.6 294 69.4
Lj1g0025115 Lotus japonicus HOM05D004518 ORTHO05D005434 4.4e-105 385.2 293 68.6
Manes.09G003700 Manihot esculenta HOM05D004518 ORTHO05D005434 4.4e-105 385.2 292 69.9
GSVIVG01025741001 Vitis vinifera HOM05D004518 ORTHO05D005434 4.4e-105 385.2 295 69.2
Glyma.19G129500 Glycine max HOM05D004518 ORTHO05D005434 7.6e-105 384.4 294 69.0
Actinidia06430 Actinidia chinensis HOM05D004518 ORTHO05D005434 6.4e-104 381.3 295 67.5
Medtr7g089550 Medicago truncatula HOM05D004518 ORTHO05D005434 8.4e-104 380.9 297 67.0
FAN09G3120 Fragaria x ananassa HOM05D004518 ORTHO05D005434 1.4e-103 380.2 319 64.6
MD12G1096200 Malus domestica HOM05D004518 ORTHO05D005434 3.2e-103 379.0 293 69.6
VMungo1383G1992 Vigna mungo HOM05D004518 ORTHO05D005434 3.2e-103 379.0 297 68.0
PGR031G0872 Punica granatum HOM05D004518 ORTHO05D005434 5.4e-103 378.3 292 67.8
CiPaw.09G048700 Carya illinoinensis HOM05D004518 ORTHO05D005434 2.1e-102 376.3 293 67.2
Duzib106G1523 Durio zibethinus HOM05D004518 ORTHO05D005434 7.9e-102 374.4 294 67.0
ECA247G2040 Erigeron canadensis HOM05D004518 ORTHO05D005434 3.0e-101 372.5 290 66.6
EL10Ac3g07249 Beta vulgaris HOM05D004518 ORTHO05D005434 3.9e-101 372.1 294 66.3
arahy.Tifrunner.gnm1.ann1.5HY1FK Arachis hypogaea HOM05D004518 ORTHO05D005434 1.5e-100 370.2 323 61.0
Lsat_1_v5_gn_9_30021 Lactuca sativa HOM05D004518 ORTHO05D005434 3.3e-100 369.0 286 66.4
Oeu022968.1 Olea europaea HOM05D004518 ORTHO05D005434 1.3e-99 367.1 293 66.2
PGSC0003DMG400023695 Solanum tuberosum HOM05D004518 ORTHO05D005434 1.3e-99 367.1 295 65.4
PSO339G3176 Papaver somniferum HOM05D004518 ORTHO05D005434 1.6e-99 366.7 297 66.3
Cc06_g19630 Coffea canephora HOM05D004518 ORTHO05D005434 2.1e-99 366.3 292 64.7
HanXRQChr10g0292841 Helianthus annuus HOM05D004518 ORTHO05D005434 2.1e-99 366.3 291 64.6
Sopen10g031320 Solanum pennellii HOM05D004518 ORTHO05D005434 6.2e-99 364.8 295 64.7
Peaxi162Scf00696g00027 Petunia axillaris HOM05D004518 ORTHO05D005434 1.8e-98 363.2 298 64.1
SGA_v2.0_scaffold66G22264 Striga asiatica HOM05D004518 ORTHO05D005434 3.1e-98 362.5 279 67.0
Haze_20236 Corylus avellana HOM05D002003 ORTHO05D005434 6.9e-98 361.3 327 61.2
Potri.016G035800 Populus trichocarpa HOM05D004518 ORTHO05D005434 9.0e-98 360.9 293 66.9
Nitab4.5_0001173g0020 Nicotiana tabacum HOM05D004518 ORTHO05D005434 1.2e-97 360.5 290 65.2
PSO384G3583 Papaver somniferum HOM05D004518 ORTHO05D005434 1.2e-97 360.5 297 66.0
Migut.J01644 Erythranthe guttata HOM05D004518 ORTHO05D005434 2.6e-97 359.4 296 64.5
Ciclev10012184m.g Citrus clementina HOM05D004518 ORTHO05D005434 3.4e-97 359.0 328 61.9
Eucgr.K01645 Eucalyptus grandis HOM05D004518 ORTHO05D005434 4.5e-97 358.6 293 65.5
Eucgr.A02232 Eucalyptus grandis HOM05D004518 ORTHO05D005434 1.3e-96 357.1 291 63.9
Solyc10g080810.2 Solanum lycopersicum HOM05D004518 ORTHO05D005434 1.7e-96 356.7 295 64.1
Rhsim07G0181600 Rhododendron simsii HOM05D004518 ORTHO05D005434 2.2e-96 356.3 317 60.3
MBI13_g09215_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 3.8e-96 355.5 298 64.1
TAR623G1611 Trochodendron aralioides HOM05D004518 ORTHO05D005434 8.4e-96 354.4 294 65.0
SGA_v2.0_scaffold69G23161 Striga asiatica HOM05D004518 ORTHO05D005434 7.1e-95 351.3 287 64.1
unitig_744.g24180 Utricularia gibba HOM05D004518 ORTHO05D005434 6.0e-94 348.2 297 62.0
MSTRG.19796 Avicennia marina HOM05D004518 ORTHO05D005434 3.9e-93 345.5 296 61.8
MBI19_g14619_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 6.2e-91 338.2 321 58.6
Oeu063781.2 Olea europaea HOM05D004518 ORTHO05D005434 6.2e-91 338.2 352 53.4
unitig_21.g20688 Utricularia gibba HOM05D004518 ORTHO05D005434 4.5e-89 332.0 298 57.7
CDE08G0004 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 7.6e-89 331.3 299 59.9
Gohir.A13G002100 Gossypium hirsutum HOM05D004518 ORTHO05D005434 6.5e-88 328.2 297 63.0
Nn7g36811 Nelumbo nucifera HOM05D004518 ORTHO05D005434 3.5e-86 322.4 273 63.0
Duzib128G0186 Durio zibethinus HOM05D004518 ORTHO05D005434 4.6e-86 322.0 222 73.0
HPP92_018980 Vanilla planifolia HOM05D004518 ORTHO05D005434 1.8e-85 320.1 294 57.8
FAN02G2919 Fragaria x ananassa HOM05D004518 ORTHO05D005434 2.3e-85 319.7 222 72.1
Zm00001eb128690 Zea mays HOM05D004518 ORTHO05D005434 1.9e-84 316.6 294 59.5
Os01g0268800 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 3.3e-84 315.8 293 59.7
Peaxi162Scf00076g00330 Petunia axillaris HOM05D004518 ORTHO05D005434 7.4e-84 314.7 286 60.5
Aqoxy2G00434 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 9.0e-82 307.8 227 67.0
QL07p011297 Quercus lobata HOM05D004518 ORTHO05D005434 1.5e-81 307.0 261 64.0
CAN.G128.73 Capsicum annuum HOM05D004518 ORTHO05D005434 1.7e-80 303.5 227 67.8
Sc13g0001070 Simmondsia chinensis HOM05D004518 ORTHO05D005434 1.6e-78 297.0 196 75.5
arahy.Tifrunner.gnm1.ann1.CJ2XLM Arachis hypogaea HOM05D004518 ORTHO05D005434 2.7e-78 296.2 313 54.3
CDE08G0582 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 2.3e-77 293.1 294 56.1
Hund19087 Selenicereus undatus HOM05D004518 ORTHO05D005434 3.9e-77 292.4 294 56.8
Hund24582 Selenicereus undatus HOM05D004518 ORTHO05D005434 3.9e-77 292.4 288 59.4
vmacro05025 Vaccinium macrocarpon HOM05D004518 ORTHO05D005434 1.9e-76 290.0 301 53.5
Pp3c15_13440 Physcomitrium patens HOM05D004518 ORTHO05D005434 1.3e-75 287.3 290 54.1
Psat3g079720 Pisum sativum HOM05D004518 ORTHO05D005434 3.7e-75 285.8 196 71.4
Mapoly0023s0107 Marchantia polymorpha HOM05D004518 ORTHO05D005434 2.0e-73 280.0 307 50.5
Pp3c9_17200 Physcomitrium patens HOM05D004518 ORTHO05D005434 1.0e-72 277.7 274 54.7
Sabra06G0027100 Salix brachista HOM05D004518 ORTHO05D005434 1.3e-72 277.3 277 59.2
AUR62018357 Chenopodium quinoa HOM05D004518 ORTHO05D005434 5.0e-72 275.4 293 54.9
AUR62030305 Chenopodium quinoa HOM05D004518 ORTHO05D005434 5.5e-71 271.9 294 54.1
SMO364G0164 Selaginella moellendorffii HOM05D004518 ORTHO05D005434 6.1e-70 268.5 299 51.5
HPP92_001027 Vanilla planifolia HOM05D004518 ORTHO05D005434 7.9e-70 268.1 251 58.6
Zm00001eb150410 Zea mays HOM05D004518 ORTHO05D005434 7.7e-65 251.5 245 54.3
Actinidia22259 Actinidia chinensis HOM05D004518 ORTHO05D005434 1.1e-63 247.7 217 63.1
DCAR_020579 Daucus carota HOM05D004518 ORTHO05D005434 2.5e-63 246.5 295 50.5
TPR.G16082 Trifolium pratense HOM05D002003 ORTHO05D002037 7.9e-62 241.5 205 62.9
SHI48963 Sapria himalayana HOM05D004518 ORTHO05D005434 1.4e-61 240.7 363 42.4
Lj1A1090G38 Lonicera japonica HOM05D004518 ORTHO05D005434 3.0e-61 239.6 285 49.8
ATR0307G082 Amborella trichopoda HOM05D004518 ORTHO05D005434 8.8e-61 238.0 204 62.7
Aqoxy2G02076 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 8.8e-61 238.0 207 60.4
AagrBONN_evm.TU.Sc2ySwM_344.4495 Anthoceros agrestis HOM05D004518 ORTHO05D005434 1.5e-60 237.3 227 54.6
CDE02G2541 Ceratophyllum demersum HOM05D002603 ORTHO05D002907 1.8e-58 230.3 289 47.4
SGA_v2.0_scaffold66G22363 Striga asiatica HOM05D004518 ORTHO05D005434 4.1e-58 229.2 322 44.4
CBR_g11167 Chara braunii HOM05D004518 ORTHO05D005434 1.2e-57 227.6 317 41.6
Os01g0806000 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 2.7e-54 216.5 177 62.7
Lj2A402T37 Lonicera japonica HOM05D004518 ORTHO05D005434 4.2e-47 192.6 175 60.6
CBR_g18715 Chara braunii HOM05D004518 ORTHO05D005434 9.4e-47 191.4 333 38.4
Pp3c26_11360 Physcomitrium patens HOM05D004518 ORTHO05D005434 1.5e-39 167.5 326 35.6
BolC4t21949H Brassica oleracea HOM05D004518 ORTHO05D005434 9.5e-39 164.9 224 50.0
Cpa.g.sc92.78 Carica papaya HOM05D004518 ORTHO05D005434 5.2e-37 159.1 101 75.2
C04p03070 Brassica napus HOM05D004518 ORTHO05D005434 1.1e-34 151.4 256 44.5
TPR.G27640 Trifolium pratense HOM05D004518 ORTHO05D005434 4.7e-30 136.0 105 68.6
MSTRG.5996 Avicennia marina HOM05D004518 ORTHO05D005434 5.2e-29 132.5 90 71.1
Cre08.g386050 Chlamydomonas reinhardtii HOM05D004518 ORTHO05D005434 8.3e-27 125.2 308 32.1
SEGI_26369 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 9.5e-23 111.7 79 63.3
Dinv05308 Davidia involucrata HOM05D004518 ORTHO05D005434 3.2e-18 96.7 60 73.3
MCO13G544 Micromonas commoda HOM05D004518 ORTHO05D005434 3.2e-18 96.7 329 30.1
TAR369G0459 Trochodendron aralioides HOM05D004518 ORTHO05D005434 9.5e-15 85.1 100 52.0
FAN02G0789 Fragaria x ananassa HOM05D004518 ORTHO05D011253 2.8e-14 83.6 56 76.8
Psat3g079760 Pisum sativum HOM05D004518 ORTHO05D005434 3.6e-14 83.2 79 62.0
MBI19_g45264_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 4.0e-13 79.7 142 38.7
PGSC0003DMG400012448 Solanum tuberosum HOM05D004518 ORTHO05D005434 3.3e-07 60.1 42 64.3
PGSC0003DMG400010553 Solanum tuberosum HOM05D004518 ORTHO05D005434 1.6e-06 57.8 38 65.8


User provided reference genes

Program Settings