Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G38990 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 1.3e-121 439.9 239 100.0
AT2G41010 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 1.9e-101 372.9 241 88.4
CARHR136130 Cardamine hirsuta HOM05D004369 ORTHO05D004907 5.4e-88 328.2 239 74.5
Sp4g23330 Schrenkiella parvula HOM05D004369 ORTHO05D004907 7.5e-82 307.8 247 72.9
Carub.0004s2334 Capsella rubella HOM05D004369 ORTHO05D004907 7.0e-72 274.6 244 71.3
Thhalv10017173m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 9.5e-69 264.2 247 61.9
A04p31330 Brassica napus HOM05D004369 ORTHO05D004907 4.0e-67 258.8 242 62.4
BraA04t18590Z Brassica rapa HOM05D004369 ORTHO05D004907 9.8e-66 254.2 243 62.1
BcaC02g12874 Brassica carinata HOM05D004369 ORTHO05D004907 2.4e-64 249.6 243 60.9
C04p68730 Brassica napus HOM05D004369 ORTHO05D004907 3.2e-64 249.2 243 60.9
BolC4t28378H Brassica oleracea HOM05D004369 ORTHO05D004907 3.2e-64 249.2 243 60.9
Sp5g05710 Schrenkiella parvula HOM05D004369 ORTHO05D004907 8.6e-54 214.5 253 53.4
AL5G38270 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 3.6e-52 209.1 253 55.7
A09p49750 Brassica napus HOM05D004369 ORTHO05D004907 4.0e-51 205.7 244 53.3
BraA09t40428Z Brassica rapa HOM05D004369 ORTHO05D004907 4.0e-51 205.7 244 53.3
AT3G56880 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 8.9e-51 204.5 248 55.6
BolC8t50831H Brassica oleracea HOM05D004369 ORTHO05D004907 3.8e-49 199.1 245 52.2
CARHR167030 Cardamine hirsuta HOM05D004369 ORTHO05D004907 3.8e-49 199.1 261 52.1
BcaC07g40000 Brassica carinata HOM05D004369 ORTHO05D004907 8.4e-49 198.0 245 51.8
C08p32120 Brassica napus HOM05D004369 ORTHO05D004907 8.4e-49 198.0 245 51.8
BcaB02g08344 Brassica carinata HOM05D004369 ORTHO05D004907 5.4e-48 195.3 242 50.8
A04p03590 Brassica napus HOM05D004369 ORTHO05D004907 1.2e-47 194.1 247 53.4
Carub.0005s2361 Capsella rubella HOM05D004369 ORTHO05D004907 2.1e-47 193.4 267 49.4
BraA04t16076Z Brassica rapa HOM05D004369 ORTHO05D004907 6.0e-47 191.8 247 53.0
THA.LOC104803243 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 1.3e-46 190.7 253 51.4
BcaC02g09876 Brassica carinata HOM05D004369 ORTHO05D004907 4.3e-45 185.7 247 50.6
C04p35650 Brassica napus HOM05D004369 ORTHO05D004907 4.3e-45 185.7 247 50.6
BolC4t25239H Brassica oleracea HOM05D004369 ORTHO05D004907 4.3e-45 185.7 247 50.6
Aa31LG10G11730 Aethionema arabicum HOM05D004369 ORTHO05D004907 4.7e-44 182.2 251 51.0
BcaC07g40111 Brassica carinata HOM05D004369 ORTHO05D004907 5.2e-43 178.7 245 47.8
Thhalv10006505m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 1.2e-42 177.6 253 50.2
THA.LOC104824387 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 1.9e-40 170.2 258 48.8
THA.LOC104815333 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 9.0e-35 151.4 253 46.6
CiPaw.09G052400 Carya illinoinensis HOM05D004369 ORTHO05D004907 5.4e-32 142.1 244 42.2
Cfa019946 Carpinus fangiana HOM05D004369 ORTHO05D004907 1.2e-31 141.0 250 41.6
Haze_20292 Corylus avellana HOM05D004369 ORTHO05D004907 4.6e-31 139.0 250 41.6
QL07p014155 Quercus lobata HOM05D004369 ORTHO05D004907 2.3e-30 136.7 254 40.2
TWI74G0038 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 8.7e-30 134.8 255 40.4
PGR142G3989 Punica granatum HOM05D004369 ORTHO05D004907 3.3e-29 132.9 269 39.4
Lj1g0025044 Lotus japonicus HOM05D004369 ORTHO05D004907 5.6e-29 132.1 252 40.5
Atru.chr1.1512 Acer truncatum HOM05D004369 ORTHO05D004907 7.4e-29 131.7 245 40.4
Sabra16G0033500 Salix brachista HOM05D004369 ORTHO05D004907 1.6e-28 130.6 261 38.7
MBI13_g13129_MAGBIO Magnolia biondii HOM05D004369 ORTHO05D004907 2.1e-28 130.2 240 40.8
Cpa.g.sc33.191 Carica papaya HOM05D004369 ORTHO05D004907 6.2e-28 128.6 241 40.7
Potri.016G029600 Populus trichocarpa HOM05D004369 ORTHO05D004907 1.8e-27 127.1 201 45.8
VMungo1383G1978 Vigna mungo HOM05D004369 ORTHO05D004907 2.0e-26 123.6 251 39.4
Potri.006G032300 Populus trichocarpa HOM05D004369 ORTHO05D004907 3.4e-26 122.9 273 39.2
Duzib106G1975 Durio zibethinus HOM05D004369 ORTHO05D004907 7.6e-26 121.7 244 39.8
FAN09G2868 Fragaria x ananassa HOM05D004369 ORTHO05D004907 7.6e-26 121.7 260 38.5
Glyma.03G120700 Glycine max HOM05D004369 ORTHO05D004907 9.9e-26 121.3 248 39.5
Nn7g37071 Nelumbo nucifera HOM05D004369 ORTHO05D004907 2.2e-25 120.2 240 39.2
Ciclev10012618m.g Citrus clementina HOM05D004369 ORTHO05D004907 2.9e-25 119.8 256 39.8
Lalb_Chr14g0365411 Lupinus albus HOM05D004369 ORTHO05D004907 4.9e-25 119.0 248 38.3
Phvul.001G116900 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 8.4e-25 118.2 254 38.6
Dinv06038 Davidia involucrata HOM05D004369 ORTHO05D004907 1.1e-24 117.9 241 39.4
FvH4_6g07790 Fragaria vesca HOM05D004369 ORTHO05D004907 1.1e-24 117.9 262 36.6
Lalb_Chr22g0357981 Lupinus albus HOM05D004369 ORTHO05D004907 1.1e-24 117.9 247 35.2
Thecc.05G119700 Theobroma cacao HOM05D004369 ORTHO05D004907 1.4e-24 117.5 258 37.2
Psat0ss9348g0120 Pisum sativum HOM05D004369 ORTHO05D004907 2.4e-24 116.7 259 40.5
Prupe.6G310500 Prunus persica HOM05D004369 ORTHO05D004907 2.4e-24 116.7 263 37.6
TWI53G1196 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 2.4e-24 116.7 258 39.1
Sabra06G0021600 Salix brachista HOM05D004369 ORTHO05D004907 4.2e-24 115.9 189 45.0
DCAR_013523 Daucus carota HOM05D004369 ORTHO05D004907 1.6e-23 114.0 238 37.8
FAN14G1324 Fragaria x ananassa HOM05D002683 ORTHO05D007757 1.6e-23 114.0 262 35.5
Cc00_g08990 Coffea canephora HOM05D004369 ORTHO05D004907 2.1e-23 113.6 248 37.5
TAR623G1559 Trochodendron aralioides HOM05D004369 ORTHO05D004907 3.5e-23 112.8 241 36.9
Ah.13g077330 Amaranthus hybridus HOM05D004369 ORTHO05D004907 6.0e-23 112.1 233 37.3
ClCG10G016480 Citrullus lanatus HOM05D004369 ORTHO05D004907 7.9e-23 111.7 209 40.7
Glyma.19G125300 Glycine max HOM05D004369 ORTHO05D004907 7.9e-23 111.7 251 37.1
Duzib128G0931 Durio zibethinus HOM05D004369 ORTHO05D004907 1.0e-22 111.3 240 37.9
Manes.08G065900 Manihot esculenta HOM05D004369 ORTHO05D004907 1.0e-22 111.3 255 37.3
Ca_08356_v3 Cicer arietinum L. HOM05D004369 ORTHO05D004907 1.3e-22 110.9 261 39.1
MSTRG.19768 Avicennia marina HOM05D004369 ORTHO05D004907 1.8e-22 110.5 239 34.3
Phvul.002G069001 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 1.8e-22 110.5 220 41.4
Ah.04g150390 Amaranthus hybridus HOM05D004369 ORTHO05D004907 2.3e-22 110.2 241 36.9
CSS0041918 Camellia sinensis var. sinensis HOM05D004369 ORTHO05D004907 2.3e-22 110.2 239 35.1
Sc19g0007900 Simmondsia chinensis HOM05D004369 ORTHO05D004907 6.7e-22 108.6 240 38.3
Nitab4.5_0001270g0170 Nicotiana tabacum HOM05D004369 ORTHO05D004907 8.7e-22 108.2 239 33.5
RcHm_v2.0_Chr3g0457501 Rosa chinensis HOM05D004369 ORTHO05D004907 3.3e-21 106.3 188 39.4
EL10Ac3g07333 Beta vulgaris HOM05D004369 ORTHO05D004907 4.3e-21 105.9 146 45.9
Gohir.A01G192900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 4.3e-21 105.9 243 37.4
PGR042G0777 Punica granatum HOM05D004369 ORTHO05D004907 9.6e-21 104.8 244 37.3
CiPaw.10G044100 Carya illinoinensis HOM05D004369 ORTHO05D004907 1.3e-20 104.4 224 38.4
FAN02G1899 Fragaria x ananassa HOM05D002683 ORTHO05D007757 1.3e-20 104.4 256 34.4
Nitab4.5_0000123g0220 Nicotiana tabacum HOM05D004369 ORTHO05D004907 2.1e-20 103.6 235 31.9
AUR62018430 Chenopodium quinoa HOM05D004369 ORTHO05D004907 3.7e-20 102.8 159 46.5
MD04G1191900 Malus domestica HOM05D004369 ORTHO05D004907 3.7e-20 102.8 266 36.1
Gohir.D01G183200 Gossypium hirsutum HOM05D004369 ORTHO05D004907 6.2e-20 102.1 243 37.9
Gorai.002G226300 Gossypium raimondii HOM05D004369 ORTHO05D004907 6.2e-20 102.1 243 37.9
Medtr7g088620 Medicago truncatula HOM05D004369 ORTHO05D004907 1.8e-19 100.5 248 37.5
AUR62021003 Chenopodium quinoa HOM05D004369 ORTHO05D004907 3.1e-19 99.8 158 44.9
RhsimUnG0020900 Rhododendron simsii HOM05D004369 ORTHO05D004907 5.3e-19 99.0 249 34.9
Gohir.D11G320900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 6.9e-19 98.6 136 44.9
Gorai.007G351100 Gossypium raimondii HOM05D004369 ORTHO05D004907 6.9e-19 98.6 136 44.9
Oeu009515.1 Olea europaea HOM05D004369 ORTHO05D004907 6.9e-19 98.6 241 34.0
Migut.J01607 Erythranthe guttata HOM05D004369 ORTHO05D004907 9.0e-19 98.2 161 41.6
Oeu023004.1 Olea europaea HOM05D004369 ORTHO05D004907 3.4e-18 96.3 245 36.3
TPR.G22743 Trifolium pratense HOM05D004369 ORTHO05D004907 3.4e-18 96.3 182 42.3
Gohir.A11G305500 Gossypium hirsutum HOM05D004369 ORTHO05D004907 4.5e-18 95.9 136 44.1
Manes.09G001100 Manihot esculenta HOM05D004369 ORTHO05D004907 4.5e-18 95.9 184 39.7
Lsat_1_v5_gn_8_109221 Lactuca sativa HOM05D004369 ORTHO05D004907 7.6e-18 95.1 255 33.3
MELO3C009728.2 Cucumis melo HOM05D004369 ORTHO05D004907 1.0e-17 94.7 211 38.4
SalBow6G6868 Salvia bowleyana HOM05D004369 ORTHO05D004907 1.3e-17 94.4 233 32.6
MSTRG.6296 Avicennia marina HOM05D004369 ORTHO05D004907 1.7e-17 94.0 231 35.1
ECA236G2438 Erigeron canadensis HOM05D004369 ORTHO05D004907 1.7e-17 94.0 137 46.0
CANSAT80G1482 Cannabis sativa HOM05D004369 ORTHO05D004907 2.2e-17 93.6 141 46.1
DCAR_020610 Daucus carota HOM05D004369 ORTHO05D004907 2.9e-17 93.2 188 40.4
CsaV3_3G039860 Cucumis sativus L. HOM05D004369 ORTHO05D004907 3.8e-17 92.8 215 36.3
Eucgr.K01686 Eucalyptus grandis HOM05D004369 ORTHO05D004907 3.8e-17 92.8 282 31.6
Sopen10g028810 Solanum pennellii HOM05D004369 ORTHO05D004907 4.9e-17 92.4 235 31.9
Solyc10g077130.1 Solanum lycopersicum HOM05D004369 ORTHO05D004907 6.5e-17 92.0 235 31.9
Gohir.D11G321000 Gossypium hirsutum HOM05D004369 ORTHO05D004907 8.4e-17 91.7 136 44.1
Actinidia37863 Actinidia chinensis HOM05D004369 ORTHO05D004907 2.5e-16 90.1 246 35.4
Gorai.007G351200 Gossypium raimondii HOM05D004369 ORTHO05D004907 2.5e-16 90.1 136 43.4
Peaxi162Scf00607g00054 Petunia axillaris HOM05D004369 ORTHO05D004907 2.5e-16 90.1 244 30.7
Gohir.A11G305600 Gossypium hirsutum HOM05D004369 ORTHO05D004907 4.2e-16 89.4 137 43.1
CAN.G959.22 Capsicum annuum HOM05D004369 ORTHO05D004907 1.2e-15 87.8 171 38.0
Oeu044231.1 Olea europaea HOM05D004369 ORTHO05D004907 1.6e-15 87.4 243 35.0
Sed0018866 Sechium edule HOM05D004369 ORTHO05D004907 2.1e-15 87.0 184 38.0
PGSC0003DMG400007200 Solanum tuberosum HOM05D004369 ORTHO05D004907 2.1e-15 87.0 235 31.1
Oeu057811.1 Olea europaea HOM05D004369 ORTHO05D004907 3.5e-15 86.3 239 31.0
Oeu060762.1 Olea europaea HOM05D004369 ORTHO05D004907 1.0e-14 84.7 153 39.2
MSTRG.26187 Avicennia marina HOM05D004369 ORTHO05D004907 2.3e-14 83.6 232 30.2
HanXRQChr09g0258571 Helianthus annuus HOM05D004369 ORTHO05D004907 3.9e-14 82.8 237 34.6
CiPaw.12G092400 Carya illinoinensis HOM05D004369 ORTHO05D004907 3.3e-13 79.7 181 36.5
Nitab4.5_0000062g0280 Nicotiana tabacum HOM05D004369 ORTHO05D004907 3.3e-13 79.7 241 31.5
PSO339G3328 Papaver somniferum HOM05D004369 ORTHO05D004907 3.3e-13 79.7 184 33.7
Peaxi162Scf00003g05315 Petunia axillaris HOM05D004369 ORTHO05D004907 7.4e-13 78.6 140 41.4
HanXRQChr03g0086901 Helianthus annuus HOM05D004369 ORTHO05D004907 1.3e-12 77.8 185 38.9
Oeu034750.1 Olea europaea HOM05D004369 ORTHO05D004907 1.6e-12 77.4 139 39.6
PSO384G0208 Papaver somniferum HOM05D004369 ORTHO05D004907 1.6e-12 77.4 181 34.3
Oeu034749.1 Olea europaea HOM05D004369 ORTHO05D004907 4.8e-12 75.9 141 40.4
Aqoxy2G00033 Aquilegia oxysepala HOM05D004369 ORTHO05D004907 1.8e-11 73.9 166 36.1
SGA_v2.0_scaffold66G22309 Striga asiatica HOM05D004369 ORTHO05D004907 1.8e-11 73.9 129 41.9
BcaC02g12869 Brassica carinata HOM05D004369 ORTHO05D004907 2.4e-11 73.6 123 55.3
HPP92_028709 Vanilla planifolia HOM05D004369 ORTHO05D004907 3.1e-11 73.2 184 35.3
SalBow1G6186 Salvia bowleyana HOM05D004369 ORTHO05D004907 9.0e-11 71.6 248 28.6
Sc25g0005580 Simmondsia chinensis HOM05D004369 ORTHO05D004907 1.2e-10 71.2 138 42.0
Lalb_Chr24g0400611 Lupinus albus HOM05D004369 ORTHO05D004907 2.0e-10 70.5 196 33.2
PGSC0003DMG400028198 Solanum tuberosum HOM05D004369 ORTHO05D004907 2.0e-10 70.5 242 29.8
CDE09G1065 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 4.5e-10 69.3 148 38.5
ATR1096G063 Amborella trichopoda HOM05D004369 ORTHO05D004907 1.0e-09 68.2 167 34.1
Eucgr.A02182 Eucalyptus grandis HOM05D004369 ORTHO05D004907 1.0e-09 68.2 139 35.3
SGA_v2.0_scaffold106G30551 Striga asiatica HOM05D004369 ORTHO05D004907 1.7e-09 67.4 239 29.3
SGA_v2.0_scaffold69G23192 Striga asiatica HOM05D004369 ORTHO05D004907 2.2e-09 67.0 126 39.7
Sopen10g031550 Solanum pennellii HOM05D004369 ORTHO05D004907 2.9e-09 66.6 245 28.2
unitig_21.g20674 Utricularia gibba HOM05D004369 ORTHO05D004907 3.8e-09 66.2 158 31.6
Os11g0131100 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 6.5e-09 65.5 139 36.0
SHI12275 Sapria himalayana HOM05D004369 ORTHO05D004907 1.1e-08 64.7 93 43.0
Migut.K00167 Erythranthe guttata HOM05D004369 ORTHO05D004907 1.9e-08 63.9 208 30.3
HPP92_012446 Vanilla planifolia HOM05D004369 ORTHO05D004907 1.9e-08 63.9 190 31.1
SEGI_18240 Sequoiadendron giganteum HOM05D004369 ORTHO05D004907 2.5e-08 63.5 128 38.3
MSTRG.10776 Avicennia marina HOM05D004369 ORTHO05D004907 3.2e-08 63.2 161 36.6
CDE02G4522 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 2.1e-07 60.5 88 38.6
CDE04G0994 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 1.4e-06 57.8 102 35.3
CDE08G1070 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 5.1e-06 55.8 72 47.2
Os12g0127800 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 8.8e-06 55.1 95 41.1


User provided reference genes

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