Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G38760 Arabidopsis lyrata HOM05D006307 ORTHO05D008123 7.6e-159 563.9 313 100.0
AT2G40815 Arabidopsis thaliana HOM05D006307 ORTHO05D008123 3.7e-137 491.9 368 77.2
Carub.0004s2313 Capsella rubella HOM05D006307 ORTHO05D008123 1.7e-134 483.0 324 86.4
CARHR135930 Cardamine hirsuta HOM05D006307 ORTHO05D008123 8.2e-129 464.2 325 85.2
Thhalv10016922m.g Eutrema salsugineum HOM05D006307 ORTHO05D008123 5.9e-111 404.8 331 75.5
Sp4g23140 Schrenkiella parvula HOM05D006307 ORTHO05D008123 7.7e-111 404.4 328 74.7
A03p22960 Brassica napus HOM05D006307 ORTHO05D008123 6.7e-107 391.3 349 68.8
BraA03t11519Z Brassica rapa HOM05D006307 ORTHO05D008123 1.8e-104 383.3 348 69.8
BolC3t15106H Brassica oleracea HOM05D006307 ORTHO05D008123 2.0e-95 353.2 355 63.7
C03p27240 Brassica napus HOM05D006307 ORTHO05D008123 7.7e-95 351.3 355 63.9
BcaB01g03513 Brassica carinata HOM05D006307 ORTHO05D008123 4.4e-90 335.5 353 63.5
Aa31LG3G1290 Aethionema arabicum HOM05D006307 ORTHO05D008123 1.6e-87 327.0 356 56.7
THA.LOC104824373 Tarenaya hassleriana HOM05D006307 ORTHO05D008123 1.7e-81 307.0 339 54.3
BcaC01g05375 Brassica carinata HOM05D006307 ORTHO05D008123 4.1e-80 302.4 287 63.8
BolC3t15104H Brassica oleracea HOM05D006307 ORTHO05D008123 1.6e-79 300.4 352 57.4
C03p27220 Brassica napus HOM05D006307 ORTHO05D008123 3.5e-79 299.3 344 58.4
A03p22950 Brassica napus HOM05D006307 ORTHO05D008123 1.8e-75 287.0 213 72.8
BraA03t11518Z Brassica rapa HOM05D006307 ORTHO05D008123 1.5e-74 283.9 330 58.5
Duzib114G0239 Durio zibethinus HOM05D006307 ORTHO05D008123 4.9e-65 252.3 337 48.1
Thecc.10G187500 Theobroma cacao HOM05D006307 ORTHO05D008123 4.9e-65 252.3 337 48.7
Potri.019G065500 Populus trichocarpa HOM05D006307 ORTHO05D008123 1.2e-63 247.7 329 53.5
Ciclev10033529m.g Citrus clementina HOM05D006307 ORTHO05D008123 6.0e-63 245.4 331 48.3
Gorai.012G012900 Gossypium raimondii HOM05D006307 ORTHO05D008123 1.0e-62 244.6 324 48.8
TWI09G1245 Tripterygium wilfordii HOM05D006307 ORTHO05D008123 5.1e-62 242.3 322 47.8
COL.COLO4_19496 Corchorus olitorius HOM05D006307 ORTHO05D008123 6.6e-62 241.9 343 47.2
Atru.chr12.221 Acer truncatum HOM05D006307 ORTHO05D008123 1.1e-61 241.1 357 47.6
Gohir.A05G404900 Gossypium hirsutum HOM05D006307 ORTHO05D008123 1.9e-61 240.4 324 48.1
Gohir.D04G010800 Gossypium hirsutum HOM05D006307 ORTHO05D008123 3.3e-61 239.6 324 47.8
Manes.07G141400 Manihot esculenta HOM05D006307 ORTHO05D008123 9.5e-61 238.0 330 50.6
Sabra19G0079000 Salix brachista HOM05D006307 ORTHO05D008123 1.6e-60 237.3 328 52.4
C03p27230 Brassica napus HOM05D006307 ORTHO05D008123 6.2e-60 235.3 213 61.5
BolC3t15105H Brassica oleracea HOM05D006307 ORTHO05D008123 1.4e-59 234.2 213 61.5
Cfa001179 Carpinus fangiana HOM05D006307 ORTHO05D008123 5.2e-59 232.3 334 48.8
Dinv21870 Davidia involucrata HOM05D006307 ORTHO05D008123 2.0e-58 230.3 338 46.2
FvH4_7g26311 Fragaria vesca HOM05D006307 ORTHO05D008123 2.0e-58 230.3 345 49.6
Cpa.g.sc65.81 Carica papaya HOM05D006307 ORTHO05D008123 9.9e-58 228.0 331 48.6
FAN01G0868 Fragaria x ananassa HOM05D006307 ORTHO05D008123 9.9e-58 228.0 345 48.4
RcHm_v2.0_Chr1g0372771 Rosa chinensis HOM05D006307 ORTHO05D008123 9.9e-58 228.0 361 47.1
Nitab4.5_0000103g0020 Nicotiana tabacum HOM05D006307 ORTHO05D008123 1.3e-57 227.6 332 47.0
Nitab4.5_0001493g0020 Nicotiana tabacum HOM05D006307 ORTHO05D008123 1.7e-57 227.3 329 44.7
PGSC0003DMG400005260 Solanum tuberosum HOM05D006307 ORTHO05D008123 1.7e-57 227.3 331 47.1
TAR633G2235 Trochodendron aralioides HOM05D006307 ORTHO05D008123 1.7e-57 227.3 347 46.7
Dinv34513 Davidia involucrata HOM05D006307 ORTHO05D008123 2.2e-57 226.9 331 46.8
CiPaw.01G088900 Carya illinoinensis HOM05D006307 ORTHO05D008123 8.4e-57 224.9 330 46.1
CANSAT56G1764 Cannabis sativa HOM05D006307 ORTHO05D008123 1.9e-56 223.8 365 45.2
Sopen03g025310 Solanum pennellii HOM05D006307 ORTHO05D008123 5.4e-56 222.2 330 44.5
Prupe.2G267300 Prunus persica HOM05D006307 ORTHO05D008123 7.1e-56 221.9 345 47.2
Haze_17382 Corylus avellana HOM05D006307 ORTHO05D008123 1.2e-55 221.1 334 48.2
Eucgr.G03171 Eucalyptus grandis HOM05D006307 ORTHO05D008123 7.8e-55 218.4 323 47.1
Rhsim09G0187400 Rhododendron simsii HOM05D006307 ORTHO05D008123 2.3e-54 216.9 354 46.0
Actinidia01018 Actinidia chinensis HOM05D006307 ORTHO05D008123 3.0e-54 216.5 330 46.4
MD01G1172000 Malus domestica HOM05D006307 ORTHO05D008123 6.6e-54 215.3 364 47.3
TWI73G0583 Tripterygium wilfordii HOM05D006307 ORTHO05D008123 6.6e-54 215.3 331 46.2
GSVIVG01032869001 Vitis vinifera HOM05D006307 ORTHO05D008123 8.7e-54 214.9 331 45.3
CAN.G77.11 Capsicum annuum HOM05D006307 ORTHO05D008123 1.1e-53 214.5 350 44.0
Ca_05544_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 3.3e-53 213.0 328 44.2
Ah.10g029650 Amaranthus hybridus HOM05D006307 ORTHO05D008123 1.6e-52 210.7 347 47.0
Psat2g060080 Pisum sativum HOM05D006307 ORTHO05D008123 2.8e-52 209.9 328 44.5
PGR044G1713 Punica granatum HOM05D006307 ORTHO05D008123 2.8e-52 209.9 356 44.4
BcaB01g03514 Brassica carinata HOM05D006307 ORTHO05D008123 8.1e-52 208.4 214 55.1
Nn2g10220 Nelumbo nucifera HOM05D006307 ORTHO05D008123 4.0e-51 206.1 331 42.6
LjContig00155g0000391 Lotus japonicus HOM05D006307 ORTHO05D008123 9.0e-51 204.9 327 48.3
ECA233G0944 Erigeron canadensis HOM05D006307 ORTHO05D008123 1.2e-50 204.5 329 42.6
QL08p065320 Quercus lobata HOM05D006307 ORTHO05D008123 5.8e-50 202.2 335 43.3
Cc02_g05030 Coffea canephora HOM05D006307 ORTHO05D008123 1.7e-49 200.7 328 42.7
vmacro09945 Vaccinium macrocarpon HOM05D006307 ORTHO05D008123 2.9e-49 199.9 359 44.8
Ah.12g064690 Amaranthus hybridus HOM05D006307 ORTHO05D008123 6.4e-49 198.7 355 40.6
EL10Ac2g02693 Beta vulgaris HOM05D006307 ORTHO05D008123 8.4e-49 198.4 344 43.6
HanXRQChr14g0441281 Helianthus annuus HOM05D006307 ORTHO05D008123 1.4e-48 197.6 319 43.9
Lsat_1_v5_gn_8_11140 Lactuca sativa HOM05D006307 ORTHO05D008123 2.4e-48 196.8 326 43.6
Eucgr.J00096 Eucalyptus grandis HOM05D006307 ORTHO05D008123 7.1e-48 195.3 346 39.6
MSTRG.27248 Avicennia marina HOM05D006307 ORTHO05D008123 9.3e-48 194.9 325 46.2
arahy.Tifrunner.gnm1.ann1.78S8ZN Arachis hypogaea HOM05D006307 ORTHO05D008123 1.6e-47 194.1 346 43.4
arahy.Tifrunner.gnm1.ann1.8Y6D9P Arachis hypogaea HOM05D006307 ORTHO05D008123 1.3e-46 191.0 346 42.2
AUR62032552 Chenopodium quinoa HOM05D006307 ORTHO05D008123 3.0e-46 189.9 343 42.6
BcaC01g05374 Brassica carinata HOM05D006307 ORTHO05D008123 5.1e-46 189.1 158 62.7
Glyma.02G220300 Glycine max HOM05D006307 ORTHO05D008123 6.6e-46 188.7 339 41.9
PGR142G3034 Punica granatum HOM05D006307 ORTHO05D008123 1.1e-45 188.0 370 38.4
Lalb_Chr10g0102911 Lupinus albus HOM05D006307 ORTHO05D008123 2.5e-45 186.8 347 40.6
Glyma.14G187500 Glycine max HOM05D006307 ORTHO05D008123 5.6e-45 185.7 336 40.5
CDE04G1875 Ceratophyllum demersum HOM05D006307 ORTHO05D008123 9.6e-45 184.9 346 37.0
Medtr5g068530 Medicago truncatula HOM05D006307 ORTHO05D008123 2.1e-44 183.7 306 44.1
Cc02_g04860 Coffea canephora HOM05D006307 ORTHO05D008123 1.1e-43 181.4 168 57.7
Lalb_Chr08g0239321 Lupinus albus HOM05D006307 ORTHO05D008123 2.4e-43 180.3 333 38.4
MD07G1238500 Malus domestica HOM05D006307 ORTHO05D008123 2.4e-43 180.3 156 58.3
AUR62031669 Chenopodium quinoa HOM05D006307 ORTHO05D008123 9.0e-43 178.3 307 40.7
Migut.F00561 Erythranthe guttata HOM05D006307 ORTHO05D008123 9.0e-43 178.3 323 43.0
Glyma.06G140100 Glycine max HOM05D006307 ORTHO05D008123 5.8e-42 175.6 341 38.1
Phvul.008G187400 Phaseolus vulgaris HOM05D006307 ORTHO05D008123 1.3e-41 174.5 340 40.3
Lj1g0008062 Lotus japonicus HOM05D006307 ORTHO05D008123 2.2e-41 173.7 338 38.2
Glyma.04G224600 Glycine max HOM05D006307 ORTHO05D008123 6.4e-41 172.2 347 40.1
Sc11g0006110 Simmondsia chinensis HOM05D006307 ORTHO05D008123 1.4e-40 171.0 326 42.0
CSS0034849 Camellia sinensis var. sinensis HOM05D006307 ORTHO05D008123 5.4e-40 169.1 151 60.3
Aqoxy4G03315 Aquilegia oxysepala HOM05D006307 ORTHO05D008123 9.3e-40 168.3 164 55.5
Medtr5g069320 Medicago truncatula HOM05D006307 ORTHO05D008123 6.0e-39 165.6 151 56.3
PSO384G0230 Papaver somniferum HOM05D006307 ORTHO05D008123 1.0e-38 164.9 177 49.7
VMungo1309G1947 Vigna mungo HOM05D006307 ORTHO05D008123 5.1e-38 162.5 355 39.2
HPP92_019043 Vanilla planifolia HOM05D006307 ORTHO05D008123 6.7e-38 162.2 148 55.4
PSO339G5993 Papaver somniferum HOM05D006307 ORTHO05D008123 8.7e-38 161.8 163 52.1
TPR.G27912 Trifolium pratense HOM05D006307 ORTHO05D008123 2.5e-37 160.2 359 35.7
SGA_v2.0_scaffold60G20871 Striga asiatica HOM05D006307 ORTHO05D008123 3.3e-37 159.8 309 46.3
VMungo0647G2347 Vigna mungo HOM05D006307 ORTHO05D008123 3.3e-37 159.8 339 38.3
arahy.Tifrunner.gnm1.ann1.SS94V0 Arachis hypogaea HOM05D006307 ORTHO05D008123 4.8e-36 156.0 341 34.0
SalBow3G4635 Salvia bowleyana HOM05D006307 ORTHO05D008123 6.2e-36 155.6 149 57.7
arahy.Tifrunner.gnm1.ann1.RI9J7M Arachis hypogaea HOM05D006307 ORTHO05D008123 1.1e-35 154.8 332 35.2
Phvul.009G041400 Phaseolus vulgaris HOM05D006307 ORTHO05D008123 3.1e-35 153.3 361 33.8
Os01g0818100 Oryza sativa ssp. japonica HOM05D006307 ORTHO05D008123 5.3e-35 152.5 329 34.7
Ca_16847_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 2.0e-34 150.6 306 35.9
Medtr3g093560 Medicago truncatula HOM05D006307 ORTHO05D008123 5.8e-34 149.1 316 35.8
Solyc03g095300.4 Solanum lycopersicum HOM05D006307 ORTHO05D008123 4.2e-32 142.9 131 59.5
TPR.G13964 Trifolium pratense HOM05D006307 ORTHO05D008123 4.2e-32 142.9 330 35.2
Zm00001eb149710 Zea mays HOM05D006307 ORTHO05D008123 6.7e-30 135.6 336 32.4
Psat5g070080 Pisum sativum HOM05D006307 ORTHO05D008123 2.4e-27 127.1 343 31.2
Actinidia07776 Actinidia chinensis HOM05D006307 ORTHO05D008123 2.0e-26 124.0 156 48.7
ATR1127G014 Amborella trichopoda HOM05D006307 ORTHO05D008123 2.0e-26 124.0 314 36.9
DCAR_018052 Daucus carota HOM05D006307 ORTHO05D009387 1.6e-23 114.4 278 42.1
CAN.G70.11 Capsicum annuum HOM05D006307 ORTHO05D008123 6.9e-19 99.0 108 54.6
SEGI_32602 Sequoiadendron giganteum HOM05D006307 ORTHO05D008123 9.0e-19 98.6 158 37.3
Actinidia31756 Actinidia chinensis HOM05D006307 ORTHO05D008123 3.4e-18 96.7 265 32.8
BcaC07g39527 Brassica carinata HOM05D006307 ORTHO05D008123 3.8e-09 66.6 51 66.7
Lj4g0001384 Lotus japonicus HOM05D006307 ORTHO05D008123 1.1e-08 65.1 120 40.8
BcaC01g00185 Brassica carinata HOM05D006307 ORTHO05D092662 1.2e-07 61.6 51 62.7
Oeu001370.1 Olea europaea HOM05D006307 ORTHO05D008123 7.9e-07 58.9 86 44.2
SMO172G0022 Selaginella moellendorffii HOM05D001109 ORTHO05D001051 2.3e-06 57.4 145 28.3
Migut.N01575 Erythranthe guttata HOM05D001109 ORTHO05D001051 3.0e-06 57.0 83 36.1
SEGI_20084 Sequoiadendron giganteum HOM05D000865 ORTHO05D000739 3.0e-06 57.0 149 33.6
Ciclev10021815m.g Citrus clementina HOM05D001109 ORTHO05D001051 3.9e-06 56.6 96 32.3
Manes.03G158400 Manihot esculenta HOM05D001109 ORTHO05D001051 6.7e-06 55.8 141 27.0
PSO384G1343 Papaver somniferum HOM05D001109 ORTHO05D001051 6.7e-06 55.8 142 31.0
Hma1.2p1_0384F.1_g140860 Hydrangea macrophylla HOM05D001109 ORTHO05D001051 8.8e-06 55.5 79 35.4
PGSC0003DMG400029340 Solanum tuberosum HOM05D001109 ORTHO05D001051 8.8e-06 55.5 141 26.2


User provided reference genes

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