Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G38750 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 3.9e-79 298.1 155 100.0
AL8G37990 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 1.9e-57 226.1 161 78.9
AT5G61330 Arabidopsis thaliana HOM05D001638 ORTHO05D005197 7.8e-56 220.7 161 75.8
CARHR275090 Cardamine hirsuta HOM05D001638 ORTHO05D005197 8.1e-53 210.7 161 73.3
BcaC06g33229 Brassica carinata HOM05D001638 ORTHO05D005197 2.4e-52 209.1 161 72.7
C07p44980 Brassica napus HOM05D001638 ORTHO05D005197 2.4e-52 209.1 161 72.7
Carub.0008s2200 Capsella rubella HOM05D001638 ORTHO05D005197 2.4e-52 209.1 161 72.0
Sp2g24540 Schrenkiella parvula HOM05D001638 ORTHO05D005197 2.0e-51 206.1 161 72.0
BolC7t45021H Brassica oleracea HOM05D001638 ORTHO05D005197 2.6e-51 205.7 161 71.4
Thhalv10004255m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 4.4e-51 204.9 161 71.4
BcaC04g23457 Brassica carinata HOM05D001638 ORTHO05D005197 5.8e-51 204.5 161 72.0
A09p07280 Brassica napus HOM05D001638 ORTHO05D005197 5.8e-51 204.5 161 72.0
BraA09t36377Z Brassica rapa HOM05D001638 ORTHO05D005197 5.8e-51 204.5 161 72.0
A03p46940 Brassica napus HOM05D001638 ORTHO05D005197 9.9e-51 203.8 164 71.3
BraA03t13813Z Brassica rapa HOM05D001638 ORTHO05D005197 9.9e-51 203.8 164 71.3
C09p08140 Brassica napus HOM05D001638 ORTHO05D005197 4.9e-50 201.4 161 71.4
BolC9t53726H Brassica oleracea HOM05D001638 ORTHO05D005197 4.9e-50 201.4 161 71.4
BcaB04g19906 Brassica carinata HOM05D001638 ORTHO05D005197 4.2e-49 198.4 183 64.5
AL1G10102 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 1.7e-47 193.0 147 76.2
Thhalv10020921m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 1.5e-46 189.9 161 68.3
Aa31LG11G2080 Aethionema arabicum HOM05D001638 ORTHO05D005197 4.8e-45 184.9 156 66.7
THA.LOC104818326 Tarenaya hassleriana HOM05D001638 ORTHO05D005197 2.4e-41 172.6 161 62.7
Actinidia40391 Actinidia chinensis HOM05D001638 ORTHO05D005197 3.2e-41 172.2 156 61.5
Ciclev10015475m.g Citrus clementina HOM05D001638 ORTHO05D005197 4.2e-41 171.8 159 58.5
vmacro16776 Vaccinium macrocarpon HOM05D001638 ORTHO05D005197 4.2e-41 171.8 159 59.7
Peaxi162Scf00392g00227 Petunia axillaris HOM05D001638 ORTHO05D005197 1.6e-40 169.9 157 58.6
Gohir.D13G032100 Gossypium hirsutum HOM05D001638 ORTHO05D005197 2.1e-40 169.5 159 59.7
Gorai.013G036600 Gossypium raimondii HOM05D001638 ORTHO05D005197 2.1e-40 169.5 159 59.7
MD02G1217000 Malus domestica HOM05D001638 ORTHO05D005197 2.1e-40 169.5 165 58.2
Medtr5g064850 Medicago truncatula HOM05D001638 ORTHO05D005197 2.1e-40 169.5 159 59.7
Medtr7g007890 Medicago truncatula HOM05D001638 ORTHO05D005197 2.1e-40 169.5 159 59.7
Rhsim07G0034600 Rhododendron simsii HOM05D001638 ORTHO05D005197 2.1e-40 169.5 159 58.5
SGA_v2.0_scaffold5G02962 Striga asiatica HOM05D001638 ORTHO05D005197 2.7e-40 169.1 159 61.0
Gohir.A13G033800 Gossypium hirsutum HOM05D001638 ORTHO05D005197 4.6e-40 168.3 159 59.1
Prupe.2G127200 Prunus persica HOM05D001638 ORTHO05D005197 4.6e-40 168.3 168 59.5
Manes.01G272000 Manihot esculenta HOM05D001638 ORTHO05D005197 1.0e-39 167.2 156 59.6
Cfa011091 Carpinus fangiana HOM05D001638 ORTHO05D005197 1.3e-39 166.8 154 60.4
Dinv44076 Davidia involucrata HOM05D001638 ORTHO05D005197 1.3e-39 166.8 156 59.6
CSS0022011 Camellia sinensis var. sinensis HOM05D001638 ORTHO05D005197 1.7e-39 166.4 156 57.7
COL.COLO4_25944 Corchorus olitorius HOM05D001638 ORTHO05D005197 1.7e-39 166.4 156 59.6
Duzib132G0757 Durio zibethinus HOM05D001638 ORTHO05D005197 1.7e-39 166.4 156 60.3
Thecc.02G084000 Theobroma cacao HOM05D001638 ORTHO05D005197 2.3e-39 166.0 158 59.5
Ca_04112_v3 Cicer arietinum L. HOM05D001638 ORTHO05D005197 3.0e-39 165.6 156 59.0
arahy.Tifrunner.gnm1.ann1.9JI82G Arachis hypogaea HOM05D001638 ORTHO05D005197 6.6e-39 164.5 156 59.0
arahy.Tifrunner.gnm1.ann1.MQ0E05 Arachis hypogaea HOM05D001638 ORTHO05D005197 6.6e-39 164.5 156 59.0
CANSAT56G0649 Cannabis sativa HOM05D001638 ORTHO05D005197 6.6e-39 164.5 162 57.4
Cc02_g24880 Coffea canephora HOM05D001638 ORTHO05D005197 6.6e-39 164.5 159 57.9
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 6.6e-39 164.5 156 58.3
TAR629G0136 Trochodendron aralioides HOM05D001638 ORTHO05D005197 6.6e-39 164.5 170 54.7
GSVIVG01018246001 Vitis vinifera HOM05D001638 ORTHO05D005197 8.7e-39 164.1 156 59.0
Dinv43635 Davidia involucrata HOM05D001638 ORTHO05D005197 1.1e-38 163.7 156 59.0
Glyma.09G089400 Glycine max HOM05D001638 ORTHO05D005197 1.1e-38 163.7 156 59.0
Glyma.18G253900 Glycine max HOM05D001638 ORTHO05D005197 1.1e-38 163.7 156 59.0
Lalb_Chr19g0127051 Lupinus albus HOM05D001638 ORTHO05D005197 1.1e-38 163.7 155 58.1
Potri.019G085100 Populus trichocarpa HOM05D001638 ORTHO05D005197 1.1e-38 163.7 156 59.0
MSTRG.12501 Avicennia marina HOM05D001638 ORTHO05D005197 2.5e-38 162.5 159 57.2
CAN.G362.16 Capsicum annuum HOM05D001638 ORTHO05D005197 2.5e-38 162.5 156 56.4
SalBow6G5432 Salvia bowleyana HOM05D001638 ORTHO05D005197 2.5e-38 162.5 177 54.2
LjContig00564g0006049 Lotus japonicus HOM05D001638 ORTHO05D005197 3.3e-38 162.2 158 57.6
Phvul.008G045000 Phaseolus vulgaris HOM05D001638 ORTHO05D005197 3.3e-38 162.2 156 59.0
VMungo1383G3402 Vigna mungo HOM05D001638 ORTHO05D005197 4.3e-38 161.8 160 56.9
DCAR_023354 Daucus carota HOM05D001638 ORTHO05D005197 5.6e-38 161.4 166 56.6
Migut.N01781 Erythranthe guttata HOM05D001638 ORTHO05D005197 7.3e-38 161.0 161 57.1
unitig_37.g13004 Utricularia gibba HOM05D000186 ORTHO05D001124 7.3e-38 161.0 156 55.8
Eucgr.F04452 Eucalyptus grandis HOM05D001638 ORTHO05D005197 9.6e-38 160.6 159 57.2
DCAR_029773 Daucus carota HOM05D001638 ORTHO05D005197 1.3e-37 160.2 154 58.4
Sopen01g036260 Solanum pennellii HOM05D001638 ORTHO05D005197 1.3e-37 160.2 157 56.7
PGSC0003DMG400026041 Solanum tuberosum HOM05D001638 ORTHO05D005197 1.3e-37 160.2 157 56.7
CiPaw.14G021800 Carya illinoinensis HOM05D001638 ORTHO05D005197 2.8e-37 159.1 156 57.1
Solyc01g090470.3 Solanum lycopersicum HOM05D001638 ORTHO05D005197 2.8e-37 159.1 157 56.1
ClCG05G000380 Citrullus lanatus HOM05D001638 ORTHO05D005197 3.6e-37 158.7 153 58.2
Psat0s3614g0040 Pisum sativum HOM05D001638 ORTHO05D005197 3.6e-37 158.7 156 58.3
Os01g0526200 Oryza sativa ssp. japonica HOM05D001638 ORTHO05D005197 4.8e-37 158.3 155 57.4
PGR031G2794 Punica granatum HOM05D001638 ORTHO05D005197 4.8e-37 158.3 156 58.3
MELO3C005976.2 Cucumis melo HOM05D001638 ORTHO05D005197 6.2e-37 157.9 157 58.0
TAR636G3630 Trochodendron aralioides HOM05D001638 ORTHO05D005197 6.2e-37 157.9 156 57.1
Sed0004454 Sechium edule HOM05D001638 ORTHO05D005197 8.1e-37 157.5 154 57.8
FvH4_7g09810 Fragaria vesca HOM05D001638 ORTHO05D005197 1.1e-36 157.1 165 55.8
FAN01G1872 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.1e-36 157.1 165 55.8
FAN10G1788 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.1e-36 157.1 165 55.8
FAN10G2339 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.1e-36 157.1 165 55.8
RcHm_v2.0_Chr1g0346971 Rosa chinensis HOM05D001638 ORTHO05D005197 1.1e-36 157.1 165 55.8
CsaV3_3G007540 Cucumis sativus L. HOM05D001638 ORTHO05D005197 1.8e-36 156.4 157 59.2
Lsat_1_v5_gn_4_15080 Lactuca sativa HOM05D001638 ORTHO05D005197 1.8e-36 156.4 153 56.2
QL01p011221 Quercus lobata HOM05D001638 ORTHO05D005197 1.8e-36 156.4 156 58.3
QL04p031108 Quercus lobata HOM05D001638 ORTHO05D005197 1.8e-36 156.4 156 58.3
HanXRQChr14g0428901 Helianthus annuus HOM05D001638 ORTHO05D005197 2.4e-36 156.0 153 56.9
PSO017G3357 Papaver somniferum HOM05D001638 ORTHO05D005197 3.1e-36 155.6 154 56.5
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 5.3e-36 154.8 183 50.3
TPR.G11809 Trifolium pratense HOM05D001638 ORTHO05D005197 5.3e-36 154.8 184 50.0
Ah.03g133920 Amaranthus hybridus HOM05D001638 ORTHO05D005197 6.9e-36 154.5 158 56.3
AUR62023428 Chenopodium quinoa HOM05D001638 ORTHO05D005197 9.0e-36 154.1 155 56.1
PSO170G6800 Papaver somniferum HOM05D001638 ORTHO05D005197 9.0e-36 154.1 154 55.2
PSO541G3735 Papaver somniferum HOM05D001638 ORTHO05D005197 9.0e-36 154.1 154 55.2
TWI23G0567 Tripterygium wilfordii HOM05D001638 ORTHO05D005197 9.0e-36 154.1 156 56.4
Nn6g33853 Nelumbo nucifera HOM05D001638 ORTHO05D005197 1.5e-35 153.3 154 55.8
CDE03G0227 Ceratophyllum demersum HOM05D001638 ORTHO05D005197 2.0e-35 152.9 155 54.2
MBI04_g36329_MAGBIO Magnolia biondii HOM05D001638 ORTHO05D005197 2.0e-35 152.9 156 53.8
Sc02g0002980 Simmondsia chinensis HOM05D001638 ORTHO05D005197 2.0e-35 152.9 156 56.4
HanXRQChr01g0007441 Helianthus annuus HOM05D001638 ORTHO05D005197 3.4e-35 152.1 155 54.8
EL10Ac1g00784 Beta vulgaris HOM05D001638 ORTHO05D005197 4.5e-35 151.8 154 55.8
Zm00001eb333990 Zea mays HOM05D001638 ORTHO05D005197 4.5e-35 151.8 158 53.2
FAN06G3795 Fragaria x ananassa HOM05D001638 ORTHO05D005197 9.9e-35 150.6 175 50.9
Hund17077 Selenicereus undatus HOM05D001638 ORTHO05D005197 9.9e-35 150.6 158 54.4
Zm00001eb127190 Zea mays HOM05D001638 ORTHO05D005197 1.7e-34 149.8 158 53.2
ATR0057G068 Amborella trichopoda HOM05D001638 ORTHO05D005197 5.6e-30 134.8 154 50.6
SEGI_12976 Sequoiadendron giganteum HOM05D001638 ORTHO05D005197 5.6e-30 134.8 164 48.2
Aqoxy7G00848 Aquilegia oxysepala HOM05D001638 ORTHO05D005197 7.4e-30 134.4 182 47.8
Nitab4.5_0010229g0010 Nicotiana tabacum HOM05D001638 ORTHO05D005197 7.4e-30 134.4 138 55.1
HPP92_024242 Vanilla planifolia HOM05D001638 ORTHO05D005197 6.9e-28 127.9 156 52.6
Lsat_1_v5_gn_4_70960 Lactuca sativa HOM05D001638 ORTHO05D005197 1.5e-27 126.7 167 47.9
Nitab4.5_0000914g0150 Nicotiana tabacum HOM05D001638 ORTHO05D005197 1.5e-27 126.7 133 54.9
ECA234G3220 Erigeron canadensis HOM05D001638 ORTHO05D005197 4.2e-25 118.6 134 52.2
Atru.chr5.165 Acer truncatum HOM05D001638 ORTHO05D005197 9.3e-25 117.5 78 78.2
Pp3c5_7370 Physcomitrium patens HOM05D001638 ORTHO05D005197 9.3e-25 117.5 155 47.1
AUR62013726 Chenopodium quinoa HOM05D001638 ORTHO05D005197 1.0e-23 114.0 98 65.3
Mapoly0029s0122 Marchantia polymorpha HOM05D001638 ORTHO05D005197 9.6e-22 107.5 164 40.9
Actinidia12156 Actinidia chinensis HOM05D001638 ORTHO05D005197 7.6e-19 97.8 124 47.6
SHI03505 Sapria himalayana HOM05D001638 ORTHO05D005197 9.3e-17 90.9 153 37.9
Cpa.g.c42599 Carica papaya HOM05D001638 ORTHO05D005197 2.1e-16 89.7 68 69.1
Haze_17173 Corylus avellana HOM05D001638 ORTHO05D005197 2.5e-14 82.8 143 43.4
MCO04G285 Micromonas commoda HOM05D001638 ORTHO05D005197 1.6e-13 80.1 176 35.2
CBR_g1066 Chara braunii HOM05D001638 ORTHO05D005197 3.7e-13 79.0 133 38.3
AagrBONN_evm.TU.Sc2ySwM_368.1521 Anthoceros agrestis HOM05D001638 ORTHO05D005197 1.8e-12 76.6 85 50.6
Actinidia12157 Actinidia chinensis HOM05D001638 ORTHO05D005197 4.1e-12 75.5 53 73.6
MD02G1263900 Malus domestica HOM05D001638 ORTHO05D005197 1.2e-11 73.9 98 44.9
Sed0021805 Sechium edule HOM05D001638 ORTHO05D005197 4.5e-11 72.0 84 53.6
Cre13.g587000 Chlamydomonas reinhardtii HOM05D001638 ORTHO05D005197 5.9e-11 71.6 68 57.4
Cpa.g.sc116.74 Carica papaya HOM05D001638 ORTHO05D005197 1.3e-10 70.5 55 65.5
SGA_v2.0_scaffold131G34466 Striga asiatica HOM05D001638 ORTHO05D005197 1.3e-10 70.5 47 68.1
Oeu051899.1 Olea europaea HOM05D001638 ORTHO05D005197 6.5e-10 68.2 43 76.7
MD02G1264000 Malus domestica HOM05D001638 ORTHO05D005197 8.5e-10 67.8 49 75.5
arahy.Tifrunner.gnm1.ann1.XV6DNZ Arachis hypogaea HOM05D001638 ORTHO05D005197 1.4e-09 67.0 39 82.1
MD07G1101900 Malus domestica HOM05D001638 ORTHO05D005197 2.5e-09 66.2 116 38.8
MD07G1102300 Malus domestica HOM05D001638 ORTHO05D005197 9.4e-09 64.3 73 47.9
Oeu021607.1 Olea europaea HOM05D001638 ORTHO05D005197 1.6e-08 63.5 40 77.5
SMO141G0070 Selaginella moellendorffii HOM05D001638 ORTHO05D005197 1.6e-08 63.5 95 34.7
arahy.Tifrunner.gnm1.ann1.XG8PKW Arachis hypogaea HOM05D001638 ORTHO05D005197 2.3e-07 59.7 49 61.2
FAN06G4261 Fragaria x ananassa HOM05D001638 ORTHO05D005197 5.1e-07 58.5 130 35.4
MD07G1102000 Malus domestica HOM05D001638 ORTHO05D005197 6.7e-07 58.2 50 56.0
FvH4_7g09370 Fragaria vesca HOM05D001638 ORTHO05D005197 1.1e-06 57.4 125 35.2
arahy.Tifrunner.gnm1.ann1.R2G04T Arachis hypogaea HOM05D001638 ORTHO05D005197 1.5e-06 57.0 30 83.3


User provided reference genes

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