Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G38690 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 2.9e-197 691.8 378 100.0
AT2G40800 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 2.2e-192 675.6 378 96.3
Sp4g23120 Schrenkiella parvula HOM05D004331 ORTHO05D004984 4.1e-183 644.8 379 92.9
Thhalv10016808m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 1.0e-181 640.2 353 92.4
CARHR135900 Cardamine hirsuta HOM05D004331 ORTHO05D004984 1.1e-180 636.7 380 92.6
Thhalv10006036m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 4.7e-163 578.2 353 84.1
Aa31LG10G11310 Aethionema arabicum HOM05D004331 ORTHO05D004984 5.2e-162 574.7 356 83.1
CARHR166560 Cardamine hirsuta HOM05D004331 ORTHO05D004984 1.7e-160 569.7 354 83.3
THA.LOC104814366 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 8.3e-160 567.4 356 81.2
Carub.0005s2321 Capsella rubella HOM05D004331 ORTHO05D004984 1.4e-159 566.6 388 77.3
Sp5g06060 Schrenkiella parvula HOM05D004331 ORTHO05D004984 1.8e-159 566.2 382 80.6
C04p02240 Brassica napus HOM05D004331 ORTHO05D004984 5.4e-159 564.7 381 81.4
A05p01900 Brassica napus HOM05D004331 ORTHO05D004984 7.0e-159 564.3 380 85.5
BraA05t19188Z Brassica rapa HOM05D004331 ORTHO05D004984 7.0e-159 564.3 380 85.5
AT3G56430 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 9.2e-159 563.9 389 77.4
AL5G37760 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 1.3e-157 560.1 390 76.9
BolC4t21871H Brassica oleracea HOM05D004331 ORTHO05D004984 1.1e-156 557.0 354 85.0
THA.LOC104824369 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 1.9e-151 539.7 356 79.5
A09p49380 Brassica napus HOM05D004331 ORTHO05D004984 7.5e-145 517.7 349 77.7
BraA09t40391Z Brassica rapa HOM05D004331 ORTHO05D004984 7.5e-145 517.7 349 77.7
BcaC02g12734 Brassica carinata HOM05D004331 ORTHO05D004984 8.9e-138 494.2 289 93.8
BcaC07g39957 Brassica carinata HOM05D004331 ORTHO05D004984 1.0e-125 454.1 349 69.6
Cpa.g.sc19.35 Carica papaya HOM05D004331 ORTHO05D004984 8.7e-125 451.1 393 62.8
ClCG11G005520 Citrullus lanatus HOM05D004331 ORTHO05D004984 4.9e-120 435.3 369 67.8
Atru.chr12.214 Acer truncatum HOM05D004331 ORTHO05D004984 1.4e-119 433.7 352 65.6
Ciclev10031884m.g Citrus clementina HOM05D004331 ORTHO05D004984 3.2e-119 432.6 359 65.2
Carub.0004s2310 Capsella rubella HOM05D004331 ORTHO05D004984 6.0e-118 428.3 354 68.6
CsaV3_5G039270 Cucumis sativus L. HOM05D004331 ORTHO05D004984 6.7e-117 424.9 340 67.1
C08p31740 Brassica napus HOM05D004331 ORTHO05D004984 8.7e-117 424.5 349 68.2
Potri.019G062200 Populus trichocarpa HOM05D004331 ORTHO05D004984 1.5e-116 423.7 352 64.8
MELO3C022105.2 Cucumis melo HOM05D004331 ORTHO05D004984 3.6e-115 419.1 336 68.2
TWI73G1241 Tripterygium wilfordii HOM05D004331 ORTHO05D004984 1.4e-114 417.2 366 63.9
Duzib114G0903 Durio zibethinus HOM05D004331 ORTHO05D004984 1.8e-114 416.8 377 62.3
TAR636G1774 Trochodendron aralioides HOM05D004331 ORTHO05D004984 1.5e-113 413.7 387 58.4
Manes.10G004100 Manihot esculenta HOM05D004331 ORTHO05D004984 2.6e-113 412.9 366 62.3
Sabra19G0081100 Salix brachista HOM05D004331 ORTHO05D004984 3.4e-113 412.5 374 60.7
Sed0000286 Sechium edule HOM05D004331 ORTHO05D004984 5.8e-113 411.8 343 67.1
Thecc.10G186200 Theobroma cacao HOM05D004331 ORTHO05D004984 9.9e-113 411.0 347 64.3
Sabra19G0075700 Salix brachista HOM05D004331 ORTHO05D004984 1.7e-112 410.2 374 60.7
MD07G1237400 Malus domestica HOM05D004331 ORTHO05D004984 2.4e-111 406.4 346 63.9
COL.COLO4_19485 Corchorus olitorius HOM05D004331 ORTHO05D004984 1.6e-110 403.7 345 63.2
Hma1.2p1_0264F.1_g105850 Hydrangea macrophylla HOM05D004331 ORTHO05D004984 1.6e-110 403.7 365 67.1
BolC8t50795H Brassica oleracea HOM05D004331 ORTHO05D004984 3.5e-110 402.5 216 92.6
MD01G1171000 Malus domestica HOM05D004331 ORTHO05D004984 4.6e-110 402.1 346 63.9
Duzib128G0601 Durio zibethinus HOM05D004331 ORTHO05D004984 1.8e-109 400.2 378 57.7
HanXRQChr07g0204811 Helianthus annuus HOM05D004331 ORTHO05D004984 1.8e-109 400.2 387 58.7
Gohir.D10G184000 Gossypium hirsutum HOM05D004331 ORTHO05D004984 3.0e-109 399.4 375 62.4
Gorai.011G206200 Gossypium raimondii HOM05D004331 ORTHO05D004984 3.0e-109 399.4 375 62.4
Nitab4.5_0009756g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 5.1e-109 398.7 341 61.9
Dinv34508 Davidia involucrata HOM05D004331 ORTHO05D004984 6.7e-109 398.3 332 64.2
Nn5g26801 Nelumbo nucifera HOM05D004331 ORTHO05D004984 1.1e-108 397.5 389 57.1
Sc11g0006070 Simmondsia chinensis HOM05D004331 ORTHO05D004984 7.4e-108 394.8 374 58.3
CANSAT56G0386 Cannabis sativa HOM05D004331 ORTHO05D004984 2.8e-107 392.9 369 57.7
Ca_16853_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 2.8e-107 392.9 319 64.9
Ca_29501_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 2.8e-107 392.9 319 64.9
Lj1A969T93 Lonicera japonica HOM05D004331 ORTHO05D004984 2.8e-107 392.9 349 65.9
CSS0028422 Camellia sinensis var. sinensis HOM05D004331 ORTHO05D004984 6.2e-107 391.7 332 64.2
Cfa001189 Carpinus fangiana HOM05D004331 ORTHO05D004984 8.1e-107 391.3 314 67.2
MSTRG.156 Avicennia marina HOM05D004331 ORTHO05D004984 1.4e-106 390.6 252 75.8
Migut.F00564 Erythranthe guttata HOM05D004331 ORTHO05D004984 1.4e-106 390.6 352 60.8
Glyma.06G141000 Glycine max HOM05D004331 ORTHO05D004984 1.8e-106 390.2 297 68.7
QL08p065166 Quercus lobata HOM05D004331 ORTHO05D004984 1.8e-106 390.2 258 76.4
arahy.Tifrunner.gnm1.ann1.J1TSCZ Arachis hypogaea HOM05D004331 ORTHO05D004984 6.9e-106 388.3 349 59.6
Haze_17376 Corylus avellana HOM05D004331 ORTHO05D004984 9.0e-106 387.9 317 67.5
AUR62032546 Chenopodium quinoa HOM05D004331 ORTHO05D004984 1.2e-105 387.5 325 63.7
Peaxi162Scf00073g02119 Petunia axillaris HOM05D004331 ORTHO05D004984 1.2e-105 387.5 346 62.4
FvH4_7g26230 Fragaria vesca HOM05D004331 ORTHO05D004984 1.5e-105 387.1 249 77.5
FAN06G3213 Fragaria x ananassa HOM05D004331 ORTHO05D004984 1.5e-105 387.1 249 77.5
RcHm_v2.0_Chr1g0372681 Rosa chinensis HOM05D004331 ORTHO05D004984 1.5e-105 387.1 310 67.1
arahy.Tifrunner.gnm1.ann1.M9I45E Arachis hypogaea HOM05D004331 ORTHO05D004984 2.6e-105 386.3 349 59.6
PGR142G0580 Punica granatum HOM05D004331 ORTHO05D004984 2.6e-105 386.3 314 66.6
Glyma.04G223900 Glycine max HOM05D004331 ORTHO05D004984 5.8e-105 385.2 298 67.1
Psat5g069640 Pisum sativum HOM05D004331 ORTHO05D004984 7.6e-105 384.8 258 74.0
VMungo1309G0248 Vigna mungo HOM05D004331 ORTHO05D004984 1.3e-104 384.0 281 70.5
Lsat_1_v5_gn_2_127600 Lactuca sativa HOM05D004331 ORTHO05D004984 2.2e-104 383.3 317 63.1
FAN10G3590 Fragaria x ananassa HOM05D004331 ORTHO05D004984 2.9e-104 382.9 240 78.3
PGSC0003DMG400005253 Solanum tuberosum HOM05D004331 ORTHO05D004984 3.8e-104 382.5 323 63.5
Gohir.A10G177400 Gossypium hirsutum HOM05D004331 ORTHO05D004984 1.9e-103 380.2 252 74.6
Sopen03g025450 Solanum pennellii HOM05D004331 ORTHO05D004984 1.9e-103 380.2 253 74.3
EL10Ac2g02684 Beta vulgaris HOM05D004331 ORTHO05D004984 2.5e-103 379.8 367 57.5
CAN.G30.2 Capsicum annuum HOM05D004331 ORTHO05D004984 3.2e-103 379.4 336 63.1
Solyc03g095470.3 Solanum lycopersicum HOM05D004331 ORTHO05D004984 4.2e-103 379.0 253 73.9
MBI15_g36678_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 7.1e-103 378.3 232 77.6
Lalb_Chr11g0067651 Lupinus albus HOM05D004331 ORTHO05D004984 9.3e-103 377.9 282 68.4
Phvul.009G042200 Phaseolus vulgaris HOM05D004331 ORTHO05D004984 1.2e-102 377.5 278 69.8
Actinidia01013 Actinidia chinensis HOM05D004331 ORTHO05D004984 2.1e-102 376.7 326 63.2
ATR1127G084 Amborella trichopoda HOM05D004331 ORTHO05D004984 2.7e-102 376.3 255 73.7
TPR.G13966 Trifolium pratense HOM05D004331 ORTHO05D004984 2.7e-102 376.3 300 65.3
Actinidia07780 Actinidia chinensis HOM05D004331 ORTHO05D004984 6.0e-102 375.2 263 72.2
Medtr3g093690 Medicago truncatula HOM05D004331 ORTHO05D004984 6.0e-102 375.2 315 63.5
DCAR_020157 Daucus carota HOM05D004331 ORTHO05D004984 7.9e-102 374.8 325 61.5
Eucgr.L02349 Eucalyptus grandis HOM05D004331 ORTHO05D004984 7.9e-102 374.8 343 59.2
SalBow3G0869 Salvia bowleyana HOM05D004331 ORTHO05D004984 1.0e-101 374.4 327 61.8
Hund13431 Selenicereus undatus HOM05D004331 ORTHO05D004984 1.8e-101 373.6 327 62.1
SGA_v2.0_scaffold397G50761 Striga asiatica HOM05D004331 ORTHO05D004984 5.1e-101 372.1 360 57.2
vmacro09950 Vaccinium macrocarpon HOM05D004331 ORTHO05D004984 8.7e-101 371.3 387 55.0
Aqoxy4G03301 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 2.5e-100 369.8 333 58.9
Lj1g0025811 Lotus japonicus HOM05D004331 ORTHO05D004984 5.7e-100 368.6 297 64.3
Eucgr.G03152 Eucalyptus grandis HOM05D004331 ORTHO05D004984 2.8e-99 366.3 309 63.1
unitig_88.g27825 Utricularia gibba HOM05D004331 ORTHO05D004984 1.4e-98 364.0 266 66.9
PSO017G4126 Papaver somniferum HOM05D004331 ORTHO05D004984 1.5e-97 360.5 314 61.5
Lalb_Chr08g0239281 Lupinus albus HOM05D004331 ORTHO05D004984 2.6e-97 359.8 242 71.9
HPP92_012570 Vanilla planifolia HOM05D004331 ORTHO05D004984 2.6e-97 359.8 287 65.5
Rhsim09G0186700 Rhododendron simsii HOM05D004331 ORTHO05D004984 4.5e-97 359.0 319 60.8
Os01g0168300 Oryza sativa ssp. japonica HOM05D004331 ORTHO05D004984 2.2e-96 356.7 233 74.2
SEGI_36006 Sequoiadendron giganteum HOM05D004331 ORTHO05D004984 6.5e-96 355.1 266 68.0
PSO170G2208 Papaver somniferum HOM05D004331 ORTHO05D004984 1.4e-95 354.0 307 60.6
ECA238G1814 Erigeron canadensis HOM05D004331 ORTHO05D004984 6.1e-94 348.6 219 74.9
Dinv21866 Davidia involucrata HOM05D004331 ORTHO05D004984 1.8e-90 337.0 198 82.8
SGA_v2.0_scaffold60G20876 Striga asiatica HOM05D004331 ORTHO05D004984 5.3e-90 335.5 319 54.9
Pp3c7_18440 Physcomitrium patens HOM05D004331 ORTHO05D004984 1.4e-85 320.9 233 67.4
AagrBONN_evm.TU.Sc2ySwM_340.90 Anthoceros agrestis HOM05D004331 ORTHO05D004984 2.0e-84 317.0 245 63.3
Mapoly0158s0020 Marchantia polymorpha HOM05D004331 ORTHO05D004984 3.3e-84 316.2 235 64.7
Pp3c1_5190 Physcomitrium patens HOM05D004331 ORTHO05D004984 2.8e-83 313.2 295 56.9
GSVIVG01032862001 Vitis vinifera HOM05D004331 ORTHO05D004984 8.2e-83 311.6 178 84.8
FAN01G2544 Fragaria x ananassa HOM05D004331 ORTHO05D004984 1.8e-82 310.5 181 85.6
Cc02_g05110 Coffea canephora HOM05D004331 ORTHO05D004984 1.3e-80 304.3 179 83.8
Actinidia13632 Actinidia chinensis HOM05D004331 ORTHO05D004984 8.5e-80 301.6 220 71.4
SMO199G0115 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 2.0e-76 290.4 232 59.9
SMO361G0183 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 3.3e-76 289.7 231 59.7
CiPaw.02G199300 Carya illinoinensis HOM05D004331 ORTHO05D004984 2.4e-74 283.5 304 53.9
Nitab4.5_0018056g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 2.4e-74 283.5 277 56.3
CBR_g29882 Chara braunii HOM05D004331 ORTHO05D004984 1.2e-73 281.2 223 60.5
Oeu039397.2 Olea europaea HOM05D004331 ORTHO05D004984 6.7e-69 265.4 172 76.2
AUR62030578 Chenopodium quinoa HOM05D004331 ORTHO05D004984 1.3e-64 251.1 155 76.8
CiPaw.01G307700 Carya illinoinensis HOM05D004331 ORTHO05D004984 4.7e-62 242.7 162 79.0
Zm00001eb336450 Zea mays HOM05D004331 ORTHO05D004984 1.8e-61 240.7 153 75.8
Manes.03G048500 Manihot esculenta HOM05D004331 ORTHO05D004984 2.0e-57 227.3 400 41.2
Ah.10g029610 Amaranthus hybridus HOM05D000033 ORTHO05D000913 1.2e-54 218.0 136 75.7
BcaC09g50949 Brassica carinata HOM05D004331 ORTHO05D004984 2.6e-52 210.3 134 82.1
BcaC09g50388 Brassica carinata HOM05D004331 ORTHO05D004984 5.7e-52 209.1 134 91.8
BcaC04g21857 Brassica carinata HOM05D004331 ORTHO05D004984 7.5e-52 208.8 134 80.6
BolC1t02551H Brassica oleracea HOM05D004331 ORTHO05D004984 2.8e-51 206.8 134 91.0
C09p26570 Brassica napus HOM05D004331 ORTHO05D004984 8.3e-51 205.3 134 79.9
BolC9t55553H Brassica oleracea HOM05D004331 ORTHO05D004984 8.3e-51 205.3 134 79.9
BcaC02g11378 Brassica carinata HOM05D004331 ORTHO05D004984 2.4e-50 203.8 134 79.1
C04p16400 Brassica napus HOM05D004331 ORTHO05D004984 2.4e-50 203.8 134 79.1
C01p26060 Brassica napus HOM05D004331 ORTHO05D004984 3.1e-50 203.4 134 90.3
Prupe.2G266500 Prunus persica HOM05D004331 ORTHO05D004984 5.4e-50 202.6 280 51.1
SMO361G0787 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 9.2e-50 201.8 220 45.5
SMO361G0173 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 2.7e-49 200.3 220 45.0
C01p18940 Brassica napus HOM05D004331 ORTHO05D004984 1.0e-45 188.3 102 91.2
BolC1t01820H Brassica oleracea HOM05D004331 ORTHO05D004984 1.0e-45 188.3 102 91.2
MSTRG.8387 Avicennia marina HOM05D004331 ORTHO05D004984 3.7e-43 179.9 234 44.9
PRCOL_00001688 Prasinoderma coloniale HOM05D004331 ORTHO05D004984 1.5e-39 167.9 277 36.1
Cre05.g232752 Chlamydomonas reinhardtii HOM05D004331 ORTHO05D004984 2.1e-38 164.1 265 35.8
BcaC04g23398 Brassica carinata HOM05D004331 ORTHO05D004984 6.2e-38 162.5 134 79.1
Actinidia31642 Actinidia chinensis HOM05D004331 ORTHO05D004984 5.8e-36 156.0 163 57.1
C03p81590 Brassica napus HOM05D004331 ORTHO05D004984 6.4e-35 152.5 106 76.4
BolC3t20429H Brassica oleracea HOM05D004331 ORTHO05D004984 6.4e-35 152.5 106 76.4
BcaC01g00580 Brassica carinata HOM05D003032 ORTHO05D003456 1.9e-34 151.0 81 93.8
MBI15_g10655_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 1.3e-32 144.8 171 49.7
SHI31864 Sapria himalayana HOM05D004331 ORTHO05D004984 1.3e-32 144.8 91 75.8
AUR62030577 Chenopodium quinoa HOM05D004331 ORTHO05D004984 2.1e-30 137.5 174 50.6
Ah.10g029620 Amaranthus hybridus HOM05D004331 ORTHO05D004984 4.7e-30 136.3 90 71.1
HPP92_012539 Vanilla planifolia HOM05D004331 ORTHO05D004984 8.1e-30 135.6 125 60.8
SHI31865 Sapria himalayana HOM05D004331 ORTHO05D004984 4.1e-26 123.2 207 41.1
Eucgr.G03162 Eucalyptus grandis HOM05D004331 ORTHO05D004984 7.1e-26 122.5 209 41.1
CiPaw.01G307900 Carya illinoinensis HOM05D004331 ORTHO05D004984 9.2e-26 122.1 197 42.1
BolC9t53789H Brassica oleracea HOM05D004331 ORTHO05D004984 7.8e-25 119.0 87 92.0
Zm00001eb123190 Zea mays HOM05D004331 ORTHO05D004984 4.3e-23 113.2 82 64.6
SHI31863 Sapria himalayana HOM05D004331 ORTHO05D004984 1.2e-20 105.1 64 73.4
Aqoxy4G02083 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 5.8e-20 102.8 63 74.6
VMungo0540G1227 Vigna mungo HOM05D004331 ORTHO05D004984 1.1e-18 98.6 82 62.2
MCO04G099 Micromonas commoda HOM05D004331 ORTHO05D004984 9.2e-18 95.5 191 30.9
C08p13890 Brassica napus HOM05D013285 ORTHO05D004984 1.1e-15 88.6 47 93.6
BraA04t18575Z Brassica rapa HOM05D004331 ORTHO05D016805 1.2e-14 85.1 44 95.5
BolC4t28360H Brassica oleracea HOM05D004331 ORTHO05D004984 4.0e-13 80.1 68 64.7


User provided reference genes

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