Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G38500 Arabidopsis lyrata HOM05D003400 ORTHO05D003687 3.1e-293 1011.1 543 100.0
AT2G40630 Arabidopsis thaliana HOM05D003400 ORTHO05D003687 2.0e-252 875.5 544 88.1
Carub.0004s2292 Capsella rubella HOM05D003400 ORTHO05D003687 1.5e-226 789.6 546 80.8
Thhalv10016481m.g Eutrema salsugineum HOM05D003400 ORTHO05D003687 5.3e-216 754.6 548 77.6
Sp4g22960 Schrenkiella parvula HOM05D003400 ORTHO05D003687 3.8e-214 748.4 542 77.7
C03p27090 Brassica napus HOM05D003400 ORTHO05D003687 5.3e-168 595.1 547 67.1
BcaC01g05391 Brassica carinata HOM05D003400 ORTHO05D003687 1.0e-166 590.9 547 66.9
A03p22840 Brassica napus HOM05D003400 ORTHO05D003687 2.2e-166 589.7 547 66.4
BraA03t11508Z Brassica rapa HOM05D003400 ORTHO05D003687 2.7e-151 539.7 547 62.9
BcaB01g03526 Brassica carinata HOM05D003400 ORTHO05D003687 5.5e-149 531.9 547 61.8
Aa31LG3G1490 Aethionema arabicum HOM05D003400 ORTHO05D003687 9.8e-130 468.0 591 54.7
THA.LOC104813796 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 4.6e-87 326.2 594 42.9
CARHR135740 Cardamine hirsuta HOM05D003400 ORTHO05D003687 1.3e-81 308.1 208 82.2
BcaB06g29158 Brassica carinata HOM05D003400 ORTHO05D003687 8.5e-73 278.9 331 55.9
BolC4t28345H Brassica oleracea HOM05D003400 ORTHO05D003687 3.6e-71 273.5 445 46.7
BcaC02g07326 Brassica carinata HOM05D003400 ORTHO05D003687 2.0e-69 267.7 422 47.4
A04p31060 Brassica napus HOM05D003400 ORTHO05D003687 7.2e-64 249.2 336 51.5
Thecc.10G181000 Theobroma cacao HOM05D003400 ORTHO05D003687 9.4e-64 248.8 631 35.2
BraA04t18562Z Brassica rapa HOM05D003400 ORTHO05D003687 3.9e-62 243.4 323 52.3
GSVIVG01032673001 Vitis vinifera HOM05D003400 ORTHO05D003687 2.6e-61 240.7 585 33.8
Manes.07G143400 Manihot esculenta HOM05D003400 ORTHO05D003687 1.4e-59 235.0 594 35.2
Atru.chr12.183 Acer truncatum HOM05D003400 ORTHO05D003687 2.6e-58 230.7 603 34.7
COL.COLO4_19367 Corchorus olitorius HOM05D003400 ORTHO05D003687 4.5e-58 229.9 630 33.5
QL08p064852 Quercus lobata HOM05D003400 ORTHO05D003687 2.9e-57 227.3 606 34.2
C04p68450 Brassica napus HOM05D003400 ORTHO05D003687 3.8e-57 226.9 322 48.1
TWI09G1099 Tripterygium wilfordii HOM05D003400 ORTHO05D003687 3.8e-57 226.9 603 35.5
Prupe.2G264100 Prunus persica HOM05D003400 ORTHO05D003687 4.2e-56 223.4 633 33.6
Sabra19G0073600 Salix brachista HOM05D003400 ORTHO05D003687 6.1e-55 219.5 591 33.2
Haze_17357 Corylus avellana HOM05D003400 ORTHO05D003687 2.3e-54 217.6 622 34.4
TWI53G0017 Tripterygium wilfordii HOM05D003400 ORTHO05D003687 8.8e-54 215.7 601 34.6
Manes.10G001400 Manihot esculenta HOM05D003400 ORTHO05D003687 2.0e-53 214.5 600 31.7
Gorai.012G014800 Gossypium raimondii HOM05D003400 ORTHO05D003687 7.5e-53 212.6 649 32.2
ClCG07G005110 Citrullus lanatus HOM05D003400 ORTHO05D003687 9.7e-53 212.2 634 31.2
Gohir.A05G403000 Gossypium hirsutum HOM05D003400 ORTHO05D003687 9.7e-53 212.2 648 31.6
Lj1C967G2 Lonicera japonica HOM05D003400 ORTHO05D003687 1.7e-52 211.5 585 33.5
Gohir.D04G012500 Gossypium hirsutum HOM05D003400 ORTHO05D003687 2.8e-52 210.7 649 32.0
Actinidia07793 Actinidia chinensis HOM05D003400 ORTHO05D003687 3.7e-52 210.3 393 40.5
RcHm_v2.0_Chr1g0372301 Rosa chinensis HOM05D003400 ORTHO05D003687 4.8e-52 209.9 588 32.5
Hma1.2p1_0264F.1_g106160 Hydrangea macrophylla HOM05D003400 ORTHO05D003687 8.2e-52 209.1 641 32.6
Duzib114G0186 Durio zibethinus HOM05D003400 ORTHO05D003687 1.1e-51 208.8 642 32.4
MD07G1233700 Malus domestica HOM05D003400 ORTHO05D003687 1.1e-51 208.8 610 31.1
Potri.019G058200 Populus trichocarpa HOM05D003400 ORTHO05D003687 1.1e-51 208.8 591 32.3
CsaV3_5G010950 Cucumis sativus L. HOM05D003400 ORTHO05D003687 1.4e-51 208.4 632 32.6
Duzib106G2049 Durio zibethinus HOM05D003400 ORTHO05D003687 1.4e-51 208.4 649 31.7
Gohir.D05G280400 Gossypium hirsutum HOM05D003400 ORTHO05D003687 9.1e-51 205.7 385 39.0
Hma1.2p1_0292F.1_g115970 Hydrangea macrophylla HOM05D003400 ORTHO05D003687 1.2e-50 205.3 590 33.4
MELO3C020148.2 Cucumis melo HOM05D003400 ORTHO05D003687 2.0e-50 204.5 421 35.6
Ciclev10030981m.g Citrus clementina HOM05D003400 ORTHO05D003687 3.5e-50 203.8 617 31.3
CiPaw.01G306600 Carya illinoinensis HOM05D003400 ORTHO05D003687 5.9e-50 203.0 419 36.3
Solyc06g048970.3 Solanum lycopersicum HOM05D003400 ORTHO05D003687 1.0e-49 202.2 633 32.4
Sopen06g015320 Solanum pennellii HOM05D003400 ORTHO05D003687 1.0e-49 202.2 630 32.1
FAN03G2499 Fragaria x ananassa HOM05D003400 ORTHO05D003687 2.9e-49 200.7 524 32.6
CAN.G24.15 Capsicum annuum HOM05D003400 ORTHO05D003687 3.8e-49 200.3 625 32.6
PGSC0003DMG400016640 Solanum tuberosum HOM05D003400 ORTHO05D003687 3.8e-49 200.3 630 32.4
Manes.07G141701 Manihot esculenta HOM05D003400 ORTHO05D003687 5.0e-49 199.9 428 36.7
vmacro09957 Vaccinium macrocarpon HOM05D003400 ORTHO05D003687 5.0e-49 199.9 383 38.9
CSS0037757 Camellia sinensis var. sinensis HOM05D003400 ORTHO05D003687 8.5e-49 199.1 617 32.4
Eucgr.J00113 Eucalyptus grandis HOM05D003400 ORTHO05D003687 8.5e-49 199.1 661 31.5
FAN01G0709 Fragaria x ananassa HOM05D003400 ORTHO05D003687 8.5e-49 199.1 519 32.6
HanXRQChr08g0221571 Helianthus annuus HOM05D003400 ORTHO05D003687 8.5e-49 199.1 353 41.6
Rhsim09G0185900 Rhododendron simsii HOM05D003400 ORTHO05D003687 1.1e-48 198.7 387 39.3
ECA232G0413 Erigeron canadensis HOM05D003400 ORTHO05D003687 1.9e-48 198.0 378 41.5
FAN10G0615 Fragaria x ananassa HOM05D003400 ORTHO05D003687 1.9e-48 198.0 524 32.3
Gorai.009G293800 Gossypium raimondii HOM05D003400 ORTHO05D003687 3.2e-48 197.2 601 33.1
Lsat_1_v5_gn_9_60041 Lactuca sativa HOM05D003400 ORTHO05D003687 3.2e-48 197.2 364 40.9
THA.LOC104823169 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 4.2e-48 196.8 405 36.0
FAN06G1869 Fragaria x ananassa HOM05D003400 ORTHO05D003687 7.2e-48 196.1 522 31.8
Cc02_g05370 Coffea canephora HOM05D003400 ORTHO05D003687 9.4e-48 195.7 429 36.6
FvH4_7g25930 Fragaria vesca HOM05D003400 ORTHO05D003687 9.4e-48 195.7 522 31.8
Actinidia31626 Actinidia chinensis HOM05D003400 ORTHO05D003687 1.2e-47 195.3 596 33.2
Thhalv10013224m.g Eutrema salsugineum HOM05D003400 ORTHO05D003687 1.6e-47 194.9 585 34.2
Actinidia13648 Actinidia chinensis HOM05D003400 ORTHO05D003687 2.7e-47 194.1 605 32.1
CANSAT21G1871 Cannabis sativa HOM05D003400 ORTHO05D003687 3.6e-47 193.7 404 36.1
CARHR207990 Cardamine hirsuta HOM05D003400 ORTHO05D003687 4.7e-47 193.4 585 31.1
Lsat_1_v5_gn_8_11440 Lactuca sativa HOM05D003400 ORTHO05D003687 6.1e-47 193.0 338 41.1
MBI03_g15591_MAGBIO Magnolia biondii HOM05D003400 ORTHO05D003687 6.1e-47 193.0 565 33.3
Sed0002948 Sechium edule HOM05D003400 ORTHO05D003687 1.8e-46 191.4 486 33.5
CANSAT21G0473 Cannabis sativa HOM05D003400 ORTHO05D003687 2.3e-46 191.0 406 36.5
Ca_03351_v3 Cicer arietinum L. HOM05D003400 ORTHO05D003687 2.3e-46 191.0 624 30.0
MD01G1167700 Malus domestica HOM05D003400 ORTHO05D003687 2.3e-46 191.0 629 30.8
Nn2g10302 Nelumbo nucifera HOM05D003400 ORTHO05D003687 2.3e-46 191.0 649 31.9
Carub.0006s0417 Capsella rubella HOM05D003400 ORTHO05D003687 3.0e-46 190.7 599 32.4
ECA233G0468 Erigeron canadensis HOM05D003400 ORTHO05D003687 3.0e-46 190.7 412 38.6
MSTRG.171 Avicennia marina HOM05D003400 ORTHO05D003687 4.0e-46 190.3 416 38.2
Migut.F00607 Erythranthe guttata HOM05D003400 ORTHO05D003687 4.0e-46 190.3 481 34.3
Potri.013G091100 Populus trichocarpa HOM05D003400 ORTHO05D003687 4.0e-46 190.3 508 33.5
BcaB05g21725 Brassica carinata HOM05D003400 ORTHO05D003687 8.8e-46 189.1 389 37.3
Rhsim03G0152500 Rhododendron simsii HOM05D003400 ORTHO05D003687 8.8e-46 189.1 443 35.2
TAR633G0453 Trochodendron aralioides HOM05D003400 ORTHO05D003687 8.8e-46 189.1 426 35.4
Aqoxy4G02422 Aquilegia oxysepala HOM05D003400 ORTHO05D003687 1.2e-45 188.7 617 31.3
PGR044G0713 Punica granatum HOM05D003400 ORTHO05D003687 1.5e-45 188.3 394 37.1
Dinv21846 Davidia involucrata HOM05D003400 ORTHO05D003687 2.0e-45 188.0 664 30.9
Lj1g0015659 Lotus japonicus HOM05D003400 ORTHO05D003687 2.0e-45 188.0 614 30.3
BolC9t59909H Brassica oleracea HOM05D003400 ORTHO05D003687 4.4e-45 186.8 517 32.1
Os02g0132200 Oryza sativa ssp. japonica HOM05D003400 ORTHO05D003687 4.4e-45 186.8 388 37.4
PSO384G0897 Papaver somniferum HOM05D003400 ORTHO05D003687 4.4e-45 186.8 604 30.8
BcaC03g13153 Brassica carinata HOM05D003400 ORTHO05D003687 7.5e-45 186.0 393 36.6
SalBow3G2848 Salvia bowleyana HOM05D003400 ORTHO05D003687 7.5e-45 186.0 585 31.3
Nitab4.5_0002745g0010 Nicotiana tabacum HOM05D003400 ORTHO05D003687 9.8e-45 185.7 621 32.2
Nitab4.5_0000171g0020 Nicotiana tabacum HOM05D003400 ORTHO05D003687 2.2e-44 184.5 622 31.7
BcaC06g32233 Brassica carinata HOM05D003400 ORTHO05D003687 2.8e-44 184.1 372 36.8
THA.LOC104816509 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 4.8e-44 183.3 602 31.7
arahy.Tifrunner.gnm1.ann1.45IBUQ Arachis hypogaea HOM05D003400 ORTHO05D003687 6.3e-44 183.0 547 32.5
C09p71460 Brassica napus HOM05D003400 ORTHO05D003687 6.3e-44 183.0 516 31.8
A10p30950 Brassica napus HOM05D003400 ORTHO05D003687 8.3e-44 182.6 423 35.0
BraA10t45140Z Brassica rapa HOM05D003400 ORTHO05D003687 8.3e-44 182.6 423 35.0
C02p02230 Brassica napus HOM05D003400 ORTHO05D003687 1.1e-43 182.2 381 36.5
TAR369G0853 Trochodendron aralioides HOM05D003400 ORTHO05D003687 1.1e-43 182.2 652 29.9
Aa31LG11G6090 Aethionema arabicum HOM05D003400 ORTHO05D003687 1.4e-43 181.8 385 37.1
DCAR_029743 Daucus carota HOM05D000792 ORTHO05D004195 1.4e-43 181.8 370 37.3
PSO339G6613 Papaver somniferum HOM05D003400 ORTHO05D003687 1.4e-43 181.8 629 29.7
TAR623G0519 Trochodendron aralioides HOM05D003400 ORTHO05D003687 1.4e-43 181.8 636 30.3
AT5G05240 Arabidopsis thaliana HOM05D003400 ORTHO05D003687 1.8e-43 181.4 592 31.2
BolC2t06192H Brassica oleracea HOM05D003400 ORTHO05D003687 1.8e-43 181.4 395 36.5
DCAR_018037 Daucus carota HOM05D003400 ORTHO05D003687 1.8e-43 181.4 583 31.2
Peaxi162Scf00739g00321 Petunia axillaris HOM05D003400 ORTHO05D003687 1.8e-43 181.4 632 31.6
Zm00001eb231310 Zea mays HOM05D003400 ORTHO05D003687 2.4e-43 181.0 394 37.8
Phvul.001G062900 Phaseolus vulgaris HOM05D003400 ORTHO05D003687 4.1e-43 180.3 612 30.1
Cpa.g.sc19.58 Carica papaya HOM05D003400 ORTHO05D003687 1.6e-42 178.3 534 30.9
Sp6g37590 Schrenkiella parvula HOM05D003400 ORTHO05D003687 1.6e-42 178.3 603 31.7
Glyma.17G191500 Glycine max HOM05D003400 ORTHO05D003687 3.5e-42 177.2 419 34.4
Nn5g26847 Nelumbo nucifera HOM05D003400 ORTHO05D003687 3.5e-42 177.2 649 30.5
Oeu063984.1 Olea europaea HOM05D003400 ORTHO05D003687 3.5e-42 177.2 422 35.1
Psat6g036400 Pisum sativum HOM05D003400 ORTHO05D003687 7.7e-42 176.0 593 30.0
arahy.Tifrunner.gnm1.ann1.JMN63H Arachis hypogaea HOM05D003400 ORTHO05D003687 1.0e-41 175.6 547 31.6
BraA02t04839Z Brassica rapa HOM05D003400 ORTHO05D003687 1.3e-41 175.3 370 36.8
Glyma.14G117500 Glycine max HOM05D003400 ORTHO05D003687 1.7e-41 174.9 620 31.0
Gohir.A05G278600 Gossypium hirsutum HOM05D003400 ORTHO05D003687 2.2e-41 174.5 381 36.2
MSTRG.8889 Avicennia marina HOM05D003400 ORTHO05D003687 5.0e-41 173.3 421 34.4
Migut.F01244 Erythranthe guttata HOM05D003400 ORTHO05D003687 5.0e-41 173.3 350 37.7
VMungo0647G2516 Vigna mungo HOM05D003400 ORTHO05D003687 5.0e-41 173.3 614 30.5
SGA_v2.0_scaffold60G20888 Striga asiatica HOM05D003400 ORTHO05D003687 6.5e-41 172.9 357 37.8
AUR62030610 Chenopodium quinoa HOM05D003400 ORTHO05D003687 1.1e-40 172.2 635 29.0
MBI15_g01598_MAGBIO Magnolia biondii HOM05D003400 ORTHO05D003687 1.9e-40 171.4 391 36.6
AUR62024934 Chenopodium quinoa HOM05D003400 ORTHO05D003687 4.2e-40 170.2 638 28.7
Hund15817 Selenicereus undatus HOM05D003400 ORTHO05D003687 4.2e-40 170.2 421 33.7
TPR.G24491 Trifolium pratense HOM05D003400 ORTHO05D003687 4.2e-40 170.2 620 29.4
AL6G15080 Arabidopsis lyrata HOM05D003400 ORTHO05D003687 7.2e-40 169.5 468 32.9
PSO170G4360 Papaver somniferum HOM05D003400 ORTHO05D003687 2.1e-39 167.9 598 32.4
Lalb_Chr24g0402681 Lupinus albus HOM05D003400 ORTHO05D003687 8.0e-39 166.0 583 30.7
Medtr1g007460 Medicago truncatula HOM05D003400 ORTHO05D003687 8.0e-39 166.0 634 28.2
EL10Ac2g02645 Beta vulgaris HOM05D003400 ORTHO05D003687 1.4e-38 165.2 623 29.2
SGA_v2.0_scaffold44G16620 Striga asiatica HOM05D003400 ORTHO05D003687 1.8e-38 164.9 388 35.8
Lalb_Chr22g0360931 Lupinus albus HOM05D003400 ORTHO05D003687 4.0e-38 163.7 615 28.1
CDE04G0272 Ceratophyllum demersum HOM05D003400 ORTHO05D003687 8.8e-38 162.5 475 31.8
DCAR_020152 Daucus carota HOM05D003400 ORTHO05D003687 7.5e-37 159.5 557 30.9
PSO017G2438 Papaver somniferum HOM05D003400 ORTHO05D003687 7.5e-37 159.5 640 29.5
Lj8C54T21 Lonicera japonica HOM05D003400 ORTHO05D003687 9.8e-37 159.1 425 34.1
Sed0014609 Sechium edule HOM05D003400 ORTHO05D003687 9.8e-37 159.1 372 33.6
vmacro06891 Vaccinium macrocarpon HOM05D003400 ORTHO05D003687 1.4e-35 155.2 439 31.9
EL10Ac3g07235 Beta vulgaris HOM05D003400 ORTHO05D003687 2.0e-34 151.4 443 30.7
Ca_12768_v3 Cicer arietinum L. HOM05D003400 ORTHO05D003687 2.0e-34 151.4 517 30.4
Dinv34484 Davidia involucrata HOM05D003400 ORTHO05D003687 1.5e-32 145.2 283 39.2
Rhsim03G0152100 Rhododendron simsii HOM05D003400 ORTHO05D003687 1.6e-31 141.7 657 29.2
BcaB06g29161 Brassica carinata HOM05D003400 ORTHO05D003687 1.0e-30 139.0 189 50.8
Hund13449 Selenicereus undatus HOM05D003400 ORTHO05D003687 5.2e-30 136.7 634 27.1
Actinidia01001 Actinidia chinensis HOM05D003400 ORTHO05D003687 8.3e-28 129.4 214 43.9
Aqoxy2G00693 Aquilegia oxysepala HOM05D003400 ORTHO05D003687 7.0e-27 126.3 363 31.4
HanXRQChr09g0252221 Helianthus annuus HOM05D003400 ORTHO05D003687 8.6e-25 119.4 207 43.0
HPP92_024977 Vanilla planifolia HOM05D003400 ORTHO05D003687 2.5e-24 117.9 575 27.7
TAR636G2149 Trochodendron aralioides HOM05D003400 ORTHO05D003687 9.5e-24 115.9 165 43.0
CiPaw.13G063500 Carya illinoinensis HOM05D003400 ORTHO05D003687 1.6e-23 115.2 360 30.3
Sc14g0005640 Simmondsia chinensis HOM05D003400 ORTHO05D003687 2.6e-21 107.8 268 32.1
unitig_37.g12474 Utricularia gibba HOM05D003400 ORTHO05D003687 7.5e-21 106.3 264 36.4
BcaC06g32234 Brassica carinata HOM05D003400 ORTHO05D003687 2.7e-18 97.8 195 38.5
Haze_24472 Corylus avellana HOM05D003400 ORTHO05D003687 1.0e-17 95.9 350 29.7
TAR636G0727 Trochodendron aralioides HOM05D003400 ORTHO05D003687 1.3e-17 95.5 316 32.0
QL01p024561 Quercus lobata HOM05D003400 ORTHO05D003687 2.3e-17 94.7 374 29.1
ATR1127G045 Amborella trichopoda HOM05D003400 ORTHO05D003687 1.6e-15 88.6 352 27.8
Oeu006054.1 Olea europaea HOM05D003400 ORTHO05D003687 2.8e-15 87.8 182 35.7
Zm00001eb209040 Zea mays HOM05D003400 ORTHO05D003687 2.8e-15 87.8 123 48.0
SEGI_16914 Sequoiadendron giganteum HOM05D003400 ORTHO05D003687 6.8e-14 83.2 397 26.4
MSTRG.8378 Avicennia marina HOM05D003400 ORTHO05D003687 6.4e-12 76.6 116 42.2
Duzib128G1678 Durio zibethinus HOM05D003400 ORTHO05D003687 2.4e-11 74.7 139 42.4
Potri.013G157700 Populus trichocarpa HOM05D003400 ORTHO05D003687 1.2e-10 72.4 379 25.9
Actinidia01000 Actinidia chinensis HOM05D003400 ORTHO05D003687 1.0e-09 69.3 299 28.4
HanXRQChr09g0240401 Helianthus annuus HOM05D003400 ORTHO05D003687 1.3e-09 68.9 149 39.6
HanXRQChr09g0253941 Helianthus annuus HOM05D003400 ORTHO05D003687 1.3e-09 68.9 149 39.6
FAN03G2881 Fragaria x ananassa HOM05D003400 ORTHO05D003687 1.9e-08 65.1 95 42.1
unitig_46.g18748 Utricularia gibba HOM05D003400 ORTHO05D003687 1.6e-07 62.0 143 34.3
CSS0009268 Camellia sinensis var. sinensis HOM05D003400 ORTHO05D003687 8.9e-06 56.2 87 42.5


User provided reference genes

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