Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G38420 Arabidopsis lyrata HOM05D002451 ORTHO05D007901 8.8e-306 1052.7 511 100.0
AT2G40570 Arabidopsis thaliana HOM05D002451 ORTHO05D007901 6.1e-283 976.9 511 93.0
CARHR135670 Cardamine hirsuta HOM05D002451 ORTHO05D007901 3.3e-268 927.9 517 87.6
Sp4g22900 Schrenkiella parvula HOM05D002451 ORTHO05D007901 1.9e-260 902.1 519 85.2
Thhalv10016464m.g Eutrema salsugineum HOM05D002451 ORTHO05D007901 1.7e-256 889.0 542 82.1
BcaB06g29152 Brassica carinata HOM05D002451 ORTHO05D007901 5.2e-250 867.5 517 82.0
A04p31020 Brassica napus HOM05D002451 ORTHO05D007901 1.4e-247 859.4 517 80.9
BcaC02g07322 Brassica carinata HOM05D002451 ORTHO05D007901 3.2e-247 858.2 517 81.0
BolC4t28342H Brassica oleracea HOM05D002451 ORTHO05D007901 4.2e-247 857.8 517 81.0
BraA04t18559Z Brassica rapa HOM05D002451 ORTHO05D007901 9.3e-247 856.7 517 80.9
C04p68410 Brassica napus HOM05D002451 ORTHO05D007901 3.5e-246 854.7 517 80.9
Aa31LG3G1530 Aethionema arabicum HOM05D002451 ORTHO05D007901 6.6e-237 823.9 611 67.6
THA.LOC104807537 Tarenaya hassleriana HOM05D002451 ORTHO05D007901 3.3e-212 741.9 513 71.3
Atru.chr7.1460 Acer truncatum HOM05D002451 ORTHO05D007901 4.8e-203 711.4 517 67.1
Duzib168G1562 Durio zibethinus HOM05D002451 ORTHO05D007901 6.3e-203 711.1 506 67.6
Gorai.009G027400 Gossypium raimondii HOM05D002451 ORTHO05D007901 3.1e-202 708.8 507 67.1
CiPaw.03G225500 Carya illinoinensis HOM05D002451 ORTHO05D007901 3.8e-200 701.8 515 66.2
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 8.5e-200 700.7 517 65.0
GSVIVG01015305001 Vitis vinifera HOM05D002451 ORTHO05D007901 2.5e-199 699.1 515 66.0
CSS0003026 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D007901 1.1e-196 690.3 519 65.3
ClCG11G002150 Citrullus lanatus HOM05D002451 ORTHO05D007901 1.1e-196 690.3 512 66.0
FAN23G2627 Fragaria x ananassa HOM05D002451 ORTHO05D007901 1.5e-196 689.9 515 65.8
vmacro06250 Vaccinium macrocarpon HOM05D002451 ORTHO05D007901 2.0e-196 689.5 515 64.7
FAN26G3439 Fragaria x ananassa HOM05D002451 ORTHO05D007901 9.7e-196 687.2 515 65.6
CANSAT56G2212 Cannabis sativa HOM05D002451 ORTHO05D007901 2.2e-195 686.0 517 63.4
FAN28G1338 Fragaria x ananassa HOM05D002451 ORTHO05D007901 2.2e-195 686.0 515 66.0
Potri.018G087300 Populus trichocarpa HOM05D002451 ORTHO05D007901 1.8e-194 682.9 515 63.1
FAN26G0432 Fragaria x ananassa HOM05D002451 ORTHO05D007901 4.1e-194 681.8 515 65.4
Lalb_Chr05g0223211 Lupinus albus HOM05D002451 ORTHO05D007901 5.3e-194 681.4 510 65.5
Psat7g017040 Pisum sativum HOM05D002451 ORTHO05D007901 7.0e-194 681.0 506 65.0
RcHm_v2.0_Chr2g0091831 Rosa chinensis HOM05D002451 ORTHO05D007901 4.5e-193 678.3 523 63.9
MSTRG.10604 Avicennia marina HOM05D002451 ORTHO05D007901 2.2e-192 676.0 509 63.9
CsaV3_2G001930 Cucumis sativus L. HOM05D002451 ORTHO05D007901 3.8e-192 675.2 511 64.2
EL10Ac8g18383 Beta vulgaris HOM05D002451 ORTHO05D007901 1.1e-191 673.7 533 62.9
Hma1.2p1_0571F.1_g180680 Hydrangea macrophylla HOM05D002451 ORTHO05D007901 1.5e-191 673.3 515 64.3
Lj4g0024953 Lotus japonicus HOM05D002451 ORTHO05D007901 4.2e-191 671.8 510 64.1
Rhsim03G0237000 Rhododendron simsii HOM05D002451 ORTHO05D007901 2.7e-190 669.1 527 62.0
Actinidia32654 Actinidia chinensis HOM05D002451 ORTHO05D007901 1.0e-189 667.2 518 62.2
arahy.Tifrunner.gnm1.ann1.GUCG30 Arachis hypogaea HOM05D002451 ORTHO05D007901 2.3e-189 666.0 504 64.1
Carub.0004s2284 Capsella rubella HOM05D002451 ORTHO05D007901 3.0e-189 665.6 377 87.0
Eucgr.C00999 Eucalyptus grandis HOM05D002451 ORTHO05D007901 3.0e-189 665.6 513 64.1
MD02G1065300 Malus domestica HOM05D002451 ORTHO05D007901 4.0e-189 665.2 516 64.7
Medtr8g102540 Medicago truncatula HOM05D002451 ORTHO05D007901 8.8e-189 664.1 500 65.4
Glyma.05G227000 Glycine max HOM05D002451 ORTHO05D007901 1.2e-188 663.7 513 64.9
Nitab4.5_0005668g0020 Nicotiana tabacum HOM05D002451 ORTHO05D007901 9.7e-188 660.6 502 63.5
Sc08g0008000 Simmondsia chinensis HOM05D002451 ORTHO05D007901 9.7e-188 660.6 506 63.4
Sopen12g003400 Solanum pennellii HOM05D002451 ORTHO05D007901 2.2e-187 659.4 508 62.6
Solyc12g008450.2 Solanum lycopersicum HOM05D002451 ORTHO05D007901 5.3e-186 654.8 506 62.8
MBI04_g20306_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D007901 9.1e-186 654.1 513 63.4
Cc06_g10440 Coffea canephora HOM05D002451 ORTHO05D007901 2.7e-185 652.5 512 62.5
PGSC0003DMG400000298 Solanum tuberosum HOM05D002451 ORTHO05D007901 5.9e-185 651.4 508 62.6
Lsat_1_v5_gn_7_39761 Lactuca sativa HOM05D002451 ORTHO05D007901 1.0e-184 650.6 493 63.5
HPP92_009804 Vanilla planifolia HOM05D002451 ORTHO05D007901 1.7e-184 649.8 521 61.4
Dinv36690 Davidia involucrata HOM05D002451 ORTHO05D007901 2.9e-184 649.0 486 65.4
Aqoxy7G01412 Aquilegia oxysepala HOM05D002451 ORTHO05D007901 1.5e-183 646.7 520 60.4
Lj7A665T28 Lonicera japonica HOM05D002451 ORTHO05D007901 1.5e-183 646.7 620 54.2
SpUn0061_0010 Schrenkiella parvula HOM05D002451 ORTHO05D007901 4.7e-182 641.7 369 84.6
Oeu053181.2 Olea europaea HOM05D002451 ORTHO05D007901 8.8e-181 637.5 506 62.1
COL.COLO4_34751 Corchorus olitorius HOM05D002451 ORTHO05D007901 1.2e-180 637.1 503 62.4
MELO3C004587.2 Cucumis melo HOM05D002451 ORTHO05D007901 2.0e-180 636.3 502 61.6
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 9.1e-178 627.5 486 64.8
Ah.14g083250 Amaranthus hybridus HOM05D002451 ORTHO05D007901 2.8e-174 615.9 511 60.3
Migut.K00538 Erythranthe guttata HOM05D002451 ORTHO05D007901 1.0e-173 614.0 510 60.0
Os06g0555500 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D007901 1.0e-173 614.0 518 58.7
DCAR_012039 Daucus carota HOM05D002451 ORTHO05D007901 6.8e-173 611.3 464 64.4
SHI02693 Sapria himalayana HOM05D002451 ORTHO05D007901 3.4e-172 609.0 525 57.5
ATR0705G045 Amborella trichopoda HOM05D002451 ORTHO05D007901 9.8e-172 607.4 533 56.1
TWI34G1500 Tripterygium wilfordii HOM05D002451 ORTHO05D007901 4.9e-171 605.1 473 64.7
Sabra18G0075400 Salix brachista HOM05D002451 ORTHO05D007901 1.4e-170 603.6 556 54.5
AUR62010914 Chenopodium quinoa HOM05D002451 ORTHO05D007901 1.6e-169 600.1 511 59.9
TPR.G23434 Trifolium pratense HOM05D002451 ORTHO05D007901 1.6e-169 600.1 466 63.5
SalBow1G3696 Salvia bowleyana HOM05D002451 ORTHO05D007901 1.0e-168 597.4 524 57.4
SalBow1G8658 Salvia bowleyana HOM05D002451 ORTHO05D007901 1.0e-168 597.4 520 57.7
PGR142G3373 Punica granatum HOM05D002451 ORTHO05D007901 1.9e-167 593.2 464 63.6
Peaxi162Scf00665g00035 Petunia axillaris HOM05D002451 ORTHO05D007901 2.0e-164 583.2 510 58.2
Hund09106 Selenicereus undatus HOM05D002451 ORTHO05D007901 3.4e-164 582.4 602 53.2
Sed0018496 Sechium edule HOM05D002451 ORTHO05D007901 7.5e-164 581.3 439 64.9
VMungo0251G0535 Vigna mungo HOM05D002451 ORTHO05D007901 2.7e-161 572.8 435 65.7
SEGI_00986 Sequoiadendron giganteum HOM05D002451 ORTHO05D007901 1.3e-160 570.5 540 53.3
PSO063G0860 Papaver somniferum HOM05D002451 ORTHO05D007901 8.0e-158 561.2 461 61.6
FAN19G3003 Fragaria x ananassa HOM05D002451 ORTHO05D007901 4.6e-153 545.4 404 66.1
Prupe.7G220200 Prunus persica HOM05D002451 ORTHO05D007901 3.3e-151 539.3 432 62.5
Manes.16G108300 Manihot esculenta HOM05D002451 ORTHO05D007901 1.4e-149 533.9 431 62.2
Ciclev10008594m.g Citrus clementina HOM05D002451 ORTHO05D007901 3.1e-149 532.7 371 69.3
Nn8g39075 Nelumbo nucifera HOM05D002451 ORTHO05D007901 1.2e-148 530.8 447 59.5
Hma1.2p1_0571F.1_g180690 Hydrangea macrophylla HOM05D002451 ORTHO05D007901 3.2e-146 522.7 420 61.7
Cfa003184 Carpinus fangiana HOM05D002451 ORTHO05D007901 7.1e-146 521.5 410 62.9
Zm00001eb384640 Zea mays HOM05D002451 ORTHO05D007901 7.1e-146 521.5 469 56.9
Mapoly0002s0306 Marchantia polymorpha HOM05D002451 ORTHO05D007901 1.5e-143 513.8 551 47.2
SGA_v2.0_scaffold843G53664 Striga asiatica HOM05D002451 ORTHO05D007901 2.8e-142 509.6 429 59.2
Gohir.A05G025800 Gossypium hirsutum HOM05D002451 ORTHO05D007901 4.0e-141 505.8 394 62.9
Thecc.09G101000 Theobroma cacao HOM05D002451 ORTHO05D007901 5.2e-141 505.4 400 61.5
Pp3c1_19270 Physcomitrium patens HOM05D002451 ORTHO05D007901 1.5e-140 503.8 571 46.9
FvH4_1g06070 Fragaria vesca HOM05D002451 ORTHO05D007901 5.8e-140 501.9 407 61.9
CAN.G1241.33 Capsicum annuum HOM05D002451 ORTHO05D007901 1.1e-138 497.7 375 64.0
AagrBONN_evm.TU.Sc2ySwM_117.4166 Anthoceros agrestis HOM05D002451 ORTHO05D007901 2.5e-135 486.5 506 49.6
AUR62021412 Chenopodium quinoa HOM05D002451 ORTHO05D007901 1.2e-134 484.2 436 58.3
Phvul.002G309000 Phaseolus vulgaris HOM05D002451 ORTHO05D007901 1.7e-131 473.8 395 60.5
SMO118G0195 Selaginella moellendorffii HOM05D002451 ORTHO05D007901 1.3e-128 464.2 516 48.1
HanXRQChr09g0238871 Helianthus annuus HOM05D002451 ORTHO05D007901 4.0e-125 452.6 365 58.4
CAN.G1642.1 Capsicum annuum HOM05D002451 ORTHO05D007901 2.3e-120 436.8 418 52.6
CDE08G0666 Ceratophyllum demersum HOM05D002257 ORTHO05D007901 1.4e-109 401.0 370 54.3
TAR636G1745 Trochodendron aralioides HOM05D002451 ORTHO05D007901 1.4e-101 374.4 385 50.9
MD15G1196200 Malus domestica HOM05D002451 ORTHO05D007901 8.5e-99 365.2 499 43.9
SGA_v2.0_scaffold19G08736 Striga asiatica HOM05D002451 ORTHO05D007901 1.9e-95 354.0 235 68.5
Gohir.D05G027300 Gossypium hirsutum HOM05D002451 ORTHO05D007901 5.7e-87 325.9 245 63.7
CBR_g41536 Chara braunii HOM05D002451 ORTHO05D007901 5.3e-77 292.7 512 35.0
ECA240G2417 Erigeron canadensis HOM05D002451 ORTHO05D007901 3.5e-76 290.0 415 41.2
unitig_46.g18399 Utricularia gibba HOM05D002451 ORTHO05D007901 1.2e-68 265.0 263 53.2
SGA_v2.0_scaffold4172G54434 Striga asiatica HOM05D002451 ORTHO05D007901 8.5e-67 258.8 236 55.5
MCO03G573 Micromonas commoda HOM05D002451 ORTHO05D007901 1.1e-66 258.5 592 31.4
QL02p041683 Quercus lobata HOM05D002451 ORTHO05D007901 3.8e-59 233.4 131 81.7
SGA_v2.0_scaffold19G08729 Striga asiatica HOM05D002451 ORTHO05D007901 6.1e-57 226.1 143 72.0
PRCOL_00006066 Prasinoderma coloniale HOM05D000173 ORTHO05D004400 6.1e-49 199.5 337 36.2
CDE02G1621 Ceratophyllum demersum HOM05D002451 ORTHO05D007901 2.9e-46 190.7 158 57.0
Cpa.g.c44357 Carica papaya HOM05D002451 ORTHO05D007901 5.2e-40 169.9 138 65.2
Cre06.g272100 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D007901 6.8e-40 169.5 127 59.1
CAN.G4309.1 Capsicum annuum HOM05D002451 ORTHO05D007901 2.2e-38 164.5 146 53.4
Cpa.g.sc40.100 Carica papaya HOM05D002451 ORTHO05D007901 7.0e-37 159.5 90 83.3
Nn1g07675 Nelumbo nucifera HOM05D002451 ORTHO05D007901 1.7e-35 154.8 112 66.1
Nitab4.5_0000566g0090 Nicotiana tabacum HOM05D002451 ORTHO05D007901 1.7e-35 154.8 88 79.5
unitig_46.g18400 Utricularia gibba HOM05D002451 ORTHO05D007901 4.7e-33 146.7 88 75.0
Ciclev10010851m.g Citrus clementina HOM05D002451 ORTHO05D007901 8.4e-22 109.4 68 73.5
CBR_g41538 Chara braunii HOM05D002451 ORTHO05D007901 1.6e-17 95.1 122 43.4
TAR636G3106 Trochodendron aralioides HOM05D002451 ORTHO05D007901 1.1e-13 82.4 46 69.6
TPR.G23499 Trifolium pratense HOM05D002451 ORTHO05D007901 5.1e-11 73.6 47 66.0


User provided reference genes

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