Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G38320 Arabidopsis lyrata HOM05D002277 ORTHO05D001770 4.7e-90 334.7 196 100.0
AT2G40475 Arabidopsis thaliana HOM05D002277 ORTHO05D001770 1.3e-79 300.1 197 92.4
Thhalv10017268m.g Eutrema salsugineum HOM05D002277 ORTHO05D001770 2.7e-69 265.8 198 86.4
Carub.0004s2273 Capsella rubella HOM05D002277 ORTHO05D001770 2.3e-68 262.7 198 85.4
CARHR135590 Cardamine hirsuta HOM05D002277 ORTHO05D001770 5.0e-68 261.5 198 85.4
Sp4g22820 Schrenkiella parvula HOM05D002277 ORTHO05D001770 8.6e-68 260.8 198 78.3
A03p22770 Brassica napus HOM05D002277 ORTHO05D001770 8.3e-63 244.2 197 75.6
BraA03t11501Z Brassica rapa HOM05D002277 ORTHO05D001770 8.3e-63 244.2 197 75.6
BcaB01g03537 Brassica carinata HOM05D002277 ORTHO05D001770 7.1e-62 241.1 198 75.8
A05p01740 Brassica napus HOM05D002277 ORTHO05D001770 6.6e-60 234.6 197 72.6
C04p02010 Brassica napus HOM05D002277 ORTHO05D001770 1.1e-59 233.8 197 71.6
BraA05t19171Z Brassica rapa HOM05D002277 ORTHO05D001770 1.1e-59 233.8 196 71.9
C03p27010 Brassica napus HOM05D002277 ORTHO05D001770 2.1e-58 229.6 179 73.7
A04p30940 Brassica napus HOM05D002277 ORTHO05D001770 1.1e-57 227.3 187 78.6
BraA04t18552Z Brassica rapa HOM05D002277 ORTHO05D001770 1.1e-57 227.3 187 78.6
C04p68330 Brassica napus HOM05D002277 ORTHO05D001770 9.9e-56 220.7 187 78.6
BcaB06g29146 Brassica carinata HOM05D002277 ORTHO05D001770 3.8e-55 218.8 185 78.4
BcaC02g07305 Brassica carinata HOM05D002277 ORTHO05D001770 2.4e-54 216.1 187 77.5
BcaC02g12718 Brassica carinata HOM05D002277 ORTHO05D001770 2.4e-54 216.1 186 69.9
BolC4t28335H Brassica oleracea HOM05D002277 ORTHO05D001770 2.4e-54 216.1 187 77.5
BcaC01g05398 Brassica carinata HOM05D002277 ORTHO05D001770 6.2e-50 201.4 162 73.5
BolC4t21852H Brassica oleracea HOM05D002277 ORTHO05D001770 5.4e-46 188.3 169 66.9
Aa31LG5G19050 Aethionema arabicum HOM05D002277 ORTHO05D001770 7.4e-35 151.4 175 60.0
THA.LOC104824354 Tarenaya hassleriana HOM05D002277 ORTHO05D001770 1.1e-30 137.5 232 46.1
BolC3t15083H Brassica oleracea HOM05D002277 ORTHO05D001770 1.0e-20 104.4 58 86.2
Thhalv10006243m.g Eutrema salsugineum HOM05D010959 ORTHO05D001770 1.6e-18 97.1 186 44.1
Sp5g06240 Schrenkiella parvula HOM05D010959 ORTHO05D001770 3.7e-18 95.9 193 40.4
A09p49240 Brassica napus HOM05D010959 ORTHO05D001770 2.0e-16 90.1 184 41.3
BraA09t40377Z Brassica rapa HOM05D010959 ORTHO05D001770 2.0e-16 90.1 184 41.8
C08p31590 Brassica napus HOM05D010959 ORTHO05D001770 5.9e-16 88.6 207 40.1
BolC8t50780H Brassica oleracea HOM05D010959 ORTHO05D001770 5.9e-16 88.6 207 40.1
BcaC07g39943 Brassica carinata HOM05D010959 ORTHO05D001770 7.7e-16 88.2 207 38.2
Duzib128G0618 Durio zibethinus HOM05D002277 ORTHO05D001770 2.9e-15 86.3 211 38.4
CARHR166420 Cardamine hirsuta HOM05D010959 ORTHO05D001770 1.1e-14 84.3 201 34.3
Cpa.g.sc19.91 Carica papaya HOM05D002277 ORTHO05D001770 1.4e-14 84.0 90 42.2
Thecc.10G174900 Theobroma cacao HOM05D002277 ORTHO05D001770 5.5e-14 82.0 195 42.6
Ciclev10033390m.g Citrus clementina HOM05D002277 ORTHO05D001770 7.9e-13 78.2 204 37.3
BcaB01g00009 Brassica carinata HOM05D010959 ORTHO05D001770 1.8e-12 77.0 208 39.4
Carub.0005s2304 Capsella rubella HOM05D010959 ORTHO05D001770 2.3e-12 76.6 178 40.4
CSS0032322 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 3.9e-12 75.9 175 35.4
FvH4_7g25590 Fragaria vesca HOM05D002277 ORTHO05D001770 3.9e-12 75.9 194 37.6
Gohir.D04G013500 Gossypium hirsutum HOM05D002277 ORTHO05D001770 3.9e-12 75.9 213 34.3
Gorai.012G015800 Gossypium raimondii HOM05D002277 ORTHO05D001770 3.9e-12 75.9 213 34.3
FAN06G1120 Fragaria x ananassa HOM05D002277 ORTHO05D001770 5.1e-12 75.5 194 38.1
TAR633G2754 Trochodendron aralioides HOM05D002277 ORTHO05D001770 5.1e-12 75.5 194 42.3
TAR636G1485 Trochodendron aralioides HOM05D002277 ORTHO05D001770 8.8e-12 74.7 190 40.0
TAR623G1362 Trochodendron aralioides HOM05D002277 ORTHO05D001770 1.5e-11 73.9 190 38.4
Gohir.A05G402100 Gossypium hirsutum HOM05D002277 ORTHO05D001770 2.0e-11 73.6 214 34.1
Hma1.2p1_1240F.1_g269550 Hydrangea macrophylla HOM05D002277 ORTHO05D001770 2.5e-11 73.2 196 37.8
TAR629G0672 Trochodendron aralioides HOM05D002277 ORTHO05D001770 2.5e-11 73.2 190 39.5
COL.COLO4_03891 Corchorus olitorius HOM05D002277 ORTHO05D001770 4.3e-11 72.4 216 37.0
Actinidia29050 Actinidia chinensis HOM05D002277 ORTHO05D001770 7.4e-11 71.6 195 33.3
AT3G56260 Arabidopsis thaliana HOM05D010959 ORTHO05D001770 7.4e-11 71.6 174 40.2
FAN10G1465 Fragaria x ananassa HOM05D002277 ORTHO05D001770 9.7e-11 71.2 191 34.0
Actinidia33883 Actinidia chinensis HOM05D002277 ORTHO05D001770 1.3e-10 70.9 177 33.3
Cc02_g05610 Coffea canephora HOM05D002277 ORTHO05D001770 2.2e-10 70.1 200 31.5
Gorai.013G006000 Gossypium raimondii HOM05D002277 ORTHO05D001770 2.2e-10 70.1 159 39.6
Manes.07G138400 Manihot esculenta HOM05D002277 ORTHO05D001770 2.2e-10 70.1 161 36.6
Prupe.6G289800 Prunus persica HOM05D002277 ORTHO05D001770 2.2e-10 70.1 171 34.5
arahy.Tifrunner.gnm1.ann1.H4MVMY Arachis hypogaea HOM05D002277 ORTHO05D001770 2.8e-10 69.7 55 61.8
CiPaw.01G304400 Carya illinoinensis HOM05D002277 ORTHO05D001770 2.8e-10 69.7 187 32.6
Hma1.2p1_1052F.1_g252370 Hydrangea macrophylla HOM05D002277 ORTHO05D001770 2.8e-10 69.7 180 37.2
RcHm_v2.0_Chr1g0371651 Rosa chinensis HOM05D002277 ORTHO05D001770 2.8e-10 69.7 209 37.8
LjContig00357g0012454 Lotus japonicus HOM05D002277 ORTHO05D001770 3.7e-10 69.3 54 64.8
MSTRG.27280 Avicennia marina HOM05D002277 ORTHO05D001770 8.2e-10 68.2 170 32.4
Gohir.D13G005350 Gossypium hirsutum HOM05D002277 ORTHO05D001770 8.2e-10 68.2 151 38.4
CSS0043215 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 1.1e-09 67.8 166 42.2
Potri.013G083101 Populus trichocarpa HOM05D002277 ORTHO05D001770 1.1e-09 67.8 167 40.1
Sed0026001 Sechium edule HOM05D002277 ORTHO05D001770 1.1e-09 67.8 197 36.0
Aqoxy85s002 Aquilegia oxysepala HOM05D002277 ORTHO05D001770 1.4e-09 67.4 190 40.0
PGR004G0074 Punica granatum HOM05D002277 ORTHO05D001770 1.4e-09 67.4 65 53.8
BolC6t37519H Brassica oleracea HOM05D010959 ORTHO05D001770 1.8e-09 67.0 105 38.1
CiPaw.10G163800 Carya illinoinensis HOM05D002277 ORTHO05D001770 1.8e-09 67.0 162 42.0
Oeu058656.1 Olea europaea HOM05D002277 ORTHO05D001770 1.8e-09 67.0 183 35.5
Cfa001229 Carpinus fangiana HOM05D002277 ORTHO05D001770 3.1e-09 66.2 63 52.4
Phvul.001G249100 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 3.1e-09 66.2 100 44.0
Gohir.D10G117600 Gossypium hirsutum HOM05D002277 ORTHO05D001770 4.1e-09 65.9 153 37.3
BcaB02g07660 Brassica carinata HOM05D010959 ORTHO05D001770 5.3e-09 65.5 97 40.2
Glyma.18G021200 Glycine max HOM05D002277 ORTHO05D001770 5.3e-09 65.5 106 41.5
QL07p032796 Quercus lobata HOM05D002277 ORTHO05D001770 5.3e-09 65.5 166 35.5
A07p22870 Brassica napus HOM05D010959 ORTHO05D001770 6.9e-09 65.1 82 41.5
BraA07t29953Z Brassica rapa HOM05D010959 ORTHO05D001770 6.9e-09 65.1 82 41.5
Cfa017063 Carpinus fangiana HOM05D002277 ORTHO05D001770 6.9e-09 65.1 171 38.0
CiPaw.09G218200 Carya illinoinensis HOM05D002277 ORTHO05D001770 6.9e-09 65.1 54 59.3
Duzib268G1048 Durio zibethinus HOM05D002277 ORTHO05D001770 6.9e-09 65.1 167 32.3
Glyma.11G235700 Glycine max HOM05D002277 ORTHO05D001770 6.9e-09 65.1 54 61.1
MBI15_g33145_MAGBIO Magnolia biondii HOM05D002277 ORTHO05D001770 6.9e-09 65.1 183 39.9
Manes.10G005600 Manihot esculenta HOM05D002277 ORTHO05D001770 6.9e-09 65.1 179 37.4
PGR044G1930 Punica granatum HOM05D002277 ORTHO05D001770 6.9e-09 65.1 74 47.3
BcaC08g44774 Brassica carinata HOM05D010959 ORTHO05D001770 9.1e-09 64.7 105 37.1
C06p23450 Brassica napus HOM05D010959 ORTHO05D001770 9.1e-09 64.7 105 37.1
Gorai.011G210700 Gossypium raimondii HOM05D002277 ORTHO05D001770 9.1e-09 64.7 187 32.6
CSS0000970 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 1.2e-08 64.3 158 41.8
VMungo0647G0912 Vigna mungo HOM05D002277 ORTHO05D001770 1.2e-08 64.3 54 57.4
Cc06_g00560 Coffea canephora HOM05D002277 ORTHO05D001770 1.5e-08 63.9 205 29.3
Glyma.02G259200 Glycine max HOM05D002277 ORTHO05D001770 1.5e-08 63.9 54 57.4
Gohir.A10G181050 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.5e-08 63.9 187 32.6
Atru.chr12.148 Acer truncatum HOM05D002277 ORTHO05D001770 2.0e-08 63.5 53 60.4
Eucgr.J00136 Eucalyptus grandis HOM05D002277 ORTHO05D001770 2.0e-08 63.5 83 43.4
Glyma.14G053500 Glycine max HOM05D002277 ORTHO05D001770 2.0e-08 63.5 54 57.4
TPR.G20193 Trifolium pratense HOM05D002277 ORTHO05D001770 2.0e-08 63.5 54 59.3
VMungo1383G0121 Vigna mungo HOM05D002277 ORTHO05D001770 2.0e-08 63.5 96 40.6
Duzib212G0079 Durio zibethinus HOM05D002277 ORTHO05D001770 2.6e-08 63.2 192 33.3
Gohir.A10G149200 Gossypium hirsutum HOM05D002277 ORTHO05D001770 2.6e-08 63.2 156 32.1
Lsat_1_v5_gn_2_125460 Lactuca sativa HOM05D002277 ORTHO05D001770 2.6e-08 63.2 201 29.9
Nitab4.5_0000263g0230 Nicotiana tabacum HOM05D002277 ORTHO05D001770 2.6e-08 63.2 165 34.5
Phvul.008G218400 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 2.6e-08 63.2 54 57.4
VMungo1383G3736 Vigna mungo HOM05D002277 ORTHO05D001770 2.6e-08 63.2 176 30.1
Aa31LG10G11170 Aethionema arabicum HOM05D010959 ORTHO05D001770 3.4e-08 62.8 174 41.4
Lj2C62G11 Lonicera japonica HOM05D002277 ORTHO05D001770 3.4e-08 62.8 53 58.5
Lalb_Chr04g0250281 Lupinus albus HOM05D002277 ORTHO05D001770 3.4e-08 62.8 103 39.8
Lalb_Chr08g0231311 Lupinus albus HOM05D002277 ORTHO05D001770 3.4e-08 62.8 90 41.1
Psat5g132120 Pisum sativum HOM05D002277 ORTHO05D001770 3.4e-08 62.8 105 43.8
Nn2g13334 Nelumbo nucifera HOM05D002277 ORTHO05D001770 4.5e-08 62.4 155 42.6
Nitab4.5_0004650g0010 Nicotiana tabacum HOM05D002277 ORTHO05D001770 4.5e-08 62.4 185 31.4
HPP92_013855 Vanilla planifolia HOM05D002277 ORTHO05D001770 4.5e-08 62.4 173 35.3
Lj3g0001226 Lotus japonicus HOM05D002277 ORTHO05D001770 5.9e-08 62.0 162 31.5
Medtr3g072360 Medicago truncatula HOM05D002277 ORTHO05D001770 5.9e-08 62.0 60 55.0
Oeu033238.1 Olea europaea HOM05D002277 ORTHO05D001770 5.9e-08 62.0 183 31.1
Rhsim09G0183700 Rhododendron simsii HOM05D002277 ORTHO05D001770 5.9e-08 62.0 175 36.0
Sabra13G0072000 Salix brachista HOM05D002277 ORTHO05D001770 5.9e-08 62.0 193 35.8
AL5G37580 Arabidopsis lyrata HOM05D010959 ORTHO05D001770 7.7e-08 61.6 155 40.6
FAN02G0282 Fragaria x ananassa HOM05D002277 ORTHO05D001770 7.7e-08 61.6 53 52.8
Gorai.011G129500 Gossypium raimondii HOM05D002277 ORTHO05D001770 7.7e-08 61.6 158 36.1
TWI73G0449 Tripterygium wilfordii HOM05D002277 ORTHO05D001770 7.7e-08 61.6 123 41.5
Manes.09G115500 Manihot esculenta HOM05D002277 ORTHO05D001770 1.0e-07 61.2 53 58.5
Prupe.2G261100 Prunus persica HOM05D002277 ORTHO05D001770 1.0e-07 61.2 206 35.9
Sabra06G0083400 Salix brachista HOM05D002277 ORTHO05D001770 1.0e-07 61.2 160 35.0
CDE07G2070 Ceratophyllum demersum HOM05D002277 ORTHO05D001770 1.3e-07 60.8 62 48.4
Haze_21138 Corylus avellana HOM05D002277 ORTHO05D001770 1.3e-07 60.8 53 52.8
Haze_21144 Corylus avellana HOM05D002277 ORTHO05D001770 1.3e-07 60.8 53 52.8
Haze_21148 Corylus avellana HOM05D002277 ORTHO05D001770 1.3e-07 60.8 53 52.8
Nitab4.5_0007794g0020 Nicotiana tabacum HOM05D002277 ORTHO05D001770 1.3e-07 60.8 65 46.2
RcHm_v2.0_Chr3g0460991 Rosa chinensis HOM05D002277 ORTHO05D001770 1.3e-07 60.8 168 30.4
Gohir.D10G187900 Gossypium hirsutum HOM05D002277 ORTHO05D001770 1.7e-07 60.5 187 32.6
MSTRG.8902 Avicennia marina HOM05D002277 ORTHO05D001770 2.2e-07 60.1 198 29.8
CANSAT56G3800 Cannabis sativa HOM05D002277 ORTHO05D001770 2.2e-07 60.1 53 52.8
Gohir.A13G005650 Gossypium hirsutum HOM05D002277 ORTHO05D001770 2.2e-07 60.1 54 59.3
Oeu003223.1 Olea europaea HOM05D002277 ORTHO05D001770 2.2e-07 60.1 171 27.5
Oeu003236.1 Olea europaea HOM05D002277 ORTHO05D001770 2.2e-07 60.1 53 49.1
PSO384G4841 Papaver somniferum HOM05D002277 ORTHO05D001770 2.2e-07 60.1 198 32.8
Ah.16g104180 Amaranthus hybridus HOM05D002277 ORTHO05D001770 2.9e-07 59.7 201 32.8
MSTRG.5517 Avicennia marina HOM05D002277 ORTHO05D001770 2.9e-07 59.7 85 40.0
CDE12G0812 Ceratophyllum demersum HOM05D002277 ORTHO05D001770 2.9e-07 59.7 53 52.8
ClCG04G006490 Citrullus lanatus HOM05D002277 ORTHO05D001770 2.9e-07 59.7 58 56.9
Haze_02921 Corylus avellana HOM05D002277 ORTHO05D001770 2.9e-07 59.7 48 62.5
MELO3C026052.2 Cucumis melo HOM05D002277 ORTHO05D001770 2.9e-07 59.7 58 56.9
QL08p064469 Quercus lobata HOM05D002277 ORTHO05D001770 2.9e-07 59.7 189 30.7
Sabra13G0071200 Salix brachista HOM05D002277 ORTHO05D001770 2.9e-07 59.7 187 36.4
FvH4_6g10240 Fragaria vesca HOM05D002277 ORTHO05D001770 3.8e-07 59.3 53 52.8
TPR.G649 Trifolium pratense HOM05D002277 ORTHO05D001770 3.8e-07 59.3 60 55.0
ATR0681G220 Amborella trichopoda HOM05D002277 ORTHO05D001770 5.0e-07 58.9 90 36.7
COL.COLO4_30002 Corchorus olitorius HOM05D002277 ORTHO05D001770 5.0e-07 58.9 53 56.6
Peaxi162Scf00464g00005 Petunia axillaris HOM05D002277 ORTHO05D001770 5.0e-07 58.9 177 33.3
Thecc.04G155300 Theobroma cacao HOM05D002277 ORTHO05D001770 5.0e-07 58.9 159 36.5
MSTRG.18959 Avicennia marina HOM05D002277 ORTHO05D001770 8.5e-07 58.2 53 49.1
Ah.08g209750 Amaranthus hybridus HOM05D002277 ORTHO05D001770 1.1e-06 57.8 195 31.8
ClCG11G005770 Citrullus lanatus HOM05D002277 ORTHO05D001770 1.1e-06 57.8 198 36.4
HanXRQChr11g0337191 Helianthus annuus HOM05D002277 ORTHO05D001770 1.1e-06 57.8 53 56.6
Sabra04G0150900 Salix brachista HOM05D002277 ORTHO05D001770 1.1e-06 57.8 168 35.1
FAN03G3432 Fragaria x ananassa HOM05D002277 ORTHO05D001770 1.4e-06 57.4 56 55.4
Gorai.005G006100 Gossypium raimondii HOM05D002277 ORTHO05D001770 1.4e-06 57.4 69 46.4
Potri.006G107200 Populus trichocarpa HOM05D002277 ORTHO05D001770 1.4e-06 57.4 175 34.3
Rhsim03G0150300 Rhododendron simsii HOM05D002277 ORTHO05D001770 1.4e-06 57.4 58 51.7
SalBow3G1041 Salvia bowleyana HOM05D002277 ORTHO05D001770 1.4e-06 57.4 144 34.7
HPP92_013870 Vanilla planifolia HOM05D002277 ORTHO05D001770 1.4e-06 57.4 173 34.1
CDE04G2321 Ceratophyllum demersum HOM05D002277 ORTHO05D001770 2.5e-06 56.6 62 51.6
MELO3C019998.2 Cucumis melo HOM05D002277 ORTHO05D001770 3.2e-06 56.2 206 35.0
FAN14G3640 Fragaria x ananassa HOM05D002277 ORTHO05D001770 3.2e-06 56.2 155 31.6
Peaxi162Scf00167g00134 Petunia axillaris HOM05D002277 ORTHO05D001770 3.2e-06 56.2 165 30.3
Phvul.008G086700 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 3.2e-06 56.2 175 30.3
TWI09G0487 Tripterygium wilfordii HOM05D002277 ORTHO05D001770 3.2e-06 56.2 105 32.4
EL10Ac7g17051 Beta vulgaris HOM05D002277 ORTHO05D001770 4.2e-06 55.8 199 29.1
ECA248G3625 Erigeron canadensis HOM05D002277 ORTHO05D001770 4.2e-06 55.8 184 35.3
Ciclev10012858m.g Citrus clementina HOM05D002277 ORTHO05D001770 5.5e-06 55.5 186 31.7
Medtr4g029130 Medicago truncatula HOM05D002277 ORTHO05D001770 5.5e-06 55.5 176 27.8
Sc11g0005700 Simmondsia chinensis HOM05D002277 ORTHO05D001770 5.5e-06 55.5 175 36.6
CDE04G2385 Ceratophyllum demersum HOM05D002277 ORTHO05D001770 7.2e-06 55.1 197 34.0
Lsat_1_v5_gn_5_148320 Lactuca sativa HOM05D002277 ORTHO05D001770 7.2e-06 55.1 53 49.1
Psat7g229920 Pisum sativum HOM05D002277 ORTHO05D001770 7.2e-06 55.1 163 28.8
Glyma.18G211300 Glycine max HOM05D002277 ORTHO05D001770 9.4e-06 54.7 182 31.9
Os05g0476000 Oryza sativa ssp. japonica HOM05D002277 ORTHO05D001770 9.4e-06 54.7 60 46.7
Potri.016G133200 Populus trichocarpa HOM05D002277 ORTHO05D001770 9.4e-06 54.7 174 29.9
Sed0016478 Sechium edule HOM05D002277 ORTHO05D001770 9.4e-06 54.7 201 40.3


User provided reference genes

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