Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G37960 Arabidopsis lyrata HOM05D007655 ORTHO05D009698 2.0e-125 453.0 339 100.0
AT2G40240 Arabidopsis thaliana HOM05D007655 ORTHO05D009698 4.9e-111 405.2 335 93.4
Carub.0004s2246 Capsella rubella HOM05D007655 ORTHO05D009698 1.3e-100 370.5 333 89.5
CARHR135280 Cardamine hirsuta HOM05D007655 ORTHO05D009698 8.4e-95 351.3 336 84.8
Aa31LG5G19330 Aethionema arabicum HOM05D007655 ORTHO05D009698 1.2e-72 277.7 328 63.4
Sp5g06510 Schrenkiella parvula HOM05D007655 ORTHO05D009698 1.9e-70 270.4 331 64.0
CARHR166100 Cardamine hirsuta HOM05D007655 ORTHO05D009698 2.3e-68 263.5 332 64.2
Thhalv10006093m.g Eutrema salsugineum HOM05D007655 ORTHO05D009698 3.0e-68 263.1 331 66.2
Aa31LG10G10970 Aethionema arabicum HOM05D007655 ORTHO05D009698 5.1e-68 262.3 330 72.4
A09p48980 Brassica napus HOM05D007655 ORTHO05D009698 7.4e-67 258.5 329 62.9
BraA09t40353Z Brassica rapa HOM05D007655 ORTHO05D009698 7.4e-67 258.5 329 62.9
AT3G56030 Arabidopsis thaliana HOM05D007655 ORTHO05D009698 4.8e-66 255.8 334 54.8
AL5G37300 Arabidopsis lyrata HOM05D007655 ORTHO05D009698 1.1e-65 254.6 329 55.0
Carub.0005s2276 Capsella rubella HOM05D007655 ORTHO05D009698 1.2e-64 251.1 334 56.3
C08p31340 Brassica napus HOM05D007655 ORTHO05D009698 7.7e-64 248.4 332 61.1
BolC8t50755H Brassica oleracea HOM05D007655 ORTHO05D009698 7.7e-64 248.4 332 61.1
THA.LOC104810115 Tarenaya hassleriana HOM05D007655 ORTHO05D009698 2.2e-42 177.2 340 62.9
Cpa.g.sc19.153 Carica papaya HOM05D007655 ORTHO05D009698 4.2e-38 162.9 317 60.9
Cfa013933 Carpinus fangiana HOM05D007655 ORTHO05D009698 5.5e-38 162.5 333 39.3
RcHm_v2.0_Chr1g0370651 Rosa chinensis HOM05D007655 ORTHO05D009698 6.1e-37 159.1 331 59.5
Haze_22616 Corylus avellana HOM05D007655 ORTHO05D009698 1.2e-35 154.8 282 45.4
Aqoxy3G03604 Aquilegia oxysepala HOM05D007655 ORTHO05D009698 1.5e-35 154.5 284 65.5
TWI09G1069 Tripterygium wilfordii HOM05D007655 ORTHO05D009698 3.3e-35 153.3 287 64.5
Atru.chr12.88 Acer truncatum HOM05D007655 ORTHO05D009698 2.4e-33 147.1 289 37.7
Manes.09G163100 Manihot esculenta HOM05D004613 ORTHO05D006095 5.3e-33 146.0 288 48.6
Thecc.10G013100 Theobroma cacao HOM05D007655 ORTHO05D009698 5.3e-33 146.0 344 57.8
QL08p063505 Quercus lobata HOM05D007655 ORTHO05D009698 2.0e-32 144.1 337 56.4
Ca_19338_v3 Cicer arietinum L. HOM05D007655 ORTHO05D009698 3.5e-32 143.3 335 40.0
Cc00_g02280 Coffea canephora HOM05D007655 ORTHO05D009698 7.7e-32 142.1 298 45.0
Solyc03g095960.1 Solanum lycopersicum HOM05D007655 ORTHO05D009698 1.0e-31 141.7 305 58.4
Hma1.2p1_0523F.1_g172110 Hydrangea macrophylla HOM05D007655 ORTHO05D009698 1.7e-31 141.0 281 47.7
Nitab4.5_0006468g0020 Nicotiana tabacum HOM05D007655 ORTHO05D009698 3.8e-31 139.8 329 56.2
Sopen03g025960 Solanum pennellii HOM05D007655 ORTHO05D009698 5.0e-31 139.4 305 57.4
Nitab4.5_0002701g0030 Nicotiana tabacum HOM05D007655 ORTHO05D009698 1.5e-30 137.9 306 44.8
Lj1P959T25 Lonicera japonica HOM05D007655 ORTHO05D009698 1.9e-30 137.5 324 56.8
PGR044G0328 Punica granatum HOM05D007655 ORTHO05D009698 1.9e-30 137.5 278 48.9
CAN.G1161.24 Capsicum annuum HOM05D007655 ORTHO05D009698 3.2e-30 136.7 309 39.2
Psat1g113880 Pisum sativum HOM05D007655 ORTHO05D009698 3.2e-30 136.7 328 31.1
TPR.G40357 Trifolium pratense HOM05D007655 ORTHO05D009698 3.2e-30 136.7 329 31.3
PGSC0003DMG400027723 Solanum tuberosum HOM05D007655 ORTHO05D009698 9.4e-30 135.2 292 59.6
COL.COLO4_06431 Corchorus olitorius HOM05D007655 ORTHO05D009698 1.2e-29 134.8 336 54.5
TAR131G0001 Trochodendron aralioides HOM05D007655 ORTHO05D009698 1.6e-29 134.4 279 62.7
TAR623G1347 Trochodendron aralioides HOM05D007655 ORTHO05D009698 1.6e-29 134.4 279 62.7
Lalb_Chr03g0033351 Lupinus albus HOM05D007655 ORTHO05D009698 3.6e-29 133.3 330 30.6
Medtr6g065100 Medicago truncatula HOM05D007655 ORTHO05D009698 8.0e-29 132.1 330 42.1
Ciclev10033792m.g Citrus clementina HOM05D007655 ORTHO05D000636 1.0e-28 131.7 312 59.0
FAN06G4929 Fragaria x ananassa HOM05D007655 ORTHO05D009698 3.0e-28 130.2 327 45.3
CiPaw.02G194200 Carya illinoinensis HOM05D007655 ORTHO05D009698 5.2e-28 129.4 328 39.9
DCAR_029510 Daucus carota HOM05D007655 ORTHO05D009698 1.2e-27 128.3 283 32.5
Actinidia00669 Actinidia chinensis HOM05D007655 ORTHO05D009698 1.5e-27 127.9 288 31.9
Ca_25253_v3 Cicer arietinum L. HOM05D007655 ORTHO05D009698 2.0e-27 127.5 314 35.7
FvH4_7g24790 Fragaria vesca HOM05D007655 ORTHO05D009698 3.4e-27 126.7 327 45.0
Sopen03g025950 Solanum pennellii HOM05D007655 ORTHO05D009698 3.4e-27 126.7 309 55.3
Rhsim09G0178900 Rhododendron simsii HOM05D007655 ORTHO05D009698 1.3e-26 124.8 285 60.4
MSTRG.197 Avicennia marina HOM05D007655 ORTHO05D009698 2.8e-26 123.6 281 31.7
Lj2g0024512 Lotus japonicus HOM05D007655 ORTHO05D009698 3.7e-26 123.2 323 41.5
Sc14g0002050 Simmondsia chinensis HOM05D007655 ORTHO05D009698 4.1e-25 119.8 295 55.3
Migut.F01479 Erythranthe guttata HOM05D007655 ORTHO05D009698 7.0e-25 119.0 295 56.9
CANSAT56G4119 Cannabis sativa HOM05D007655 ORTHO05D009698 3.5e-24 116.7 283 59.4
Gohir.A06G170600 Gossypium hirsutum HOM05D007655 ORTHO05D009698 1.3e-23 114.8 288 49.0
FAN10G0222 Fragaria x ananassa HOM05D007655 ORTHO05D009698 2.3e-23 114.0 327 45.0
Phvul.004G132400 Phaseolus vulgaris HOM05D007655 ORTHO05D009698 2.9e-23 113.6 325 37.8
HanXRQChr09g0253251 Helianthus annuus HOM05D007655 ORTHO05D009698 2.5e-22 110.5 307 35.8
GSVIVG01032781001 Vitis vinifera HOM05D007655 ORTHO05D009698 4.2e-22 109.8 300 58.3
vmacro10028 Vaccinium macrocarpon HOM05D007655 ORTHO05D009698 5.5e-22 109.4 290 59.3
Duzib106G0934 Durio zibethinus HOM05D007655 ORTHO05D009698 3.6e-21 106.7 338 52.7
Glyma.09G157400 Glycine max HOM05D007655 ORTHO05D009698 1.0e-20 105.1 333 42.0
VMungo0464G0151 Vigna mungo HOM05D007655 ORTHO05D009698 1.0e-20 105.1 291 43.0
ECA232G4997 Erigeron canadensis HOM05D007655 ORTHO05D009698 3.7e-18 96.7 305 40.7
CSS0030670 Camellia sinensis var. sinensis HOM05D007655 ORTHO05D009698 4.9e-18 96.3 81 55.6
Oeu029071.1 Olea europaea HOM05D007655 ORTHO05D009698 2.4e-17 94.0 274 60.2
Haze_17251 Corylus avellana HOM05D007655 ORTHO05D009698 5.4e-17 92.8 105 43.8
SalBow5G5388 Salvia bowleyana HOM05D007655 ORTHO05D009698 3.5e-16 90.1 154 39.6
arahy.Tifrunner.gnm1.ann1.L8T4NM Arachis hypogaea HOM05D007655 ORTHO05D009698 4.5e-16 89.7 143 39.9
Gorai.N006800 Gossypium raimondii HOM05D007655 ORTHO05D009698 7.8e-16 89.0 288 49.7
Lsat_1_v5_gn_9_61061 Lactuca sativa HOM05D007655 ORTHO05D009698 7.8e-16 89.0 303 55.8
Gohir.D06G178400 Gossypium hirsutum HOM05D007655 ORTHO05D009698 1.0e-15 88.6 288 49.3
Peaxi162Scf00304g00006 Petunia axillaris HOM05D007655 ORTHO05D009698 7.3e-14 82.4 329 24.9
CDE06G0331 Ceratophyllum demersum HOM05D007655 ORTHO05D009698 8.0e-13 79.0 322 46.6
Nn2g13207 Nelumbo nucifera HOM05D007655 ORTHO05D009698 3.1e-12 77.0 75 53.3
CDE12G0438 Ceratophyllum demersum HOM05D007655 ORTHO05D009698 4.0e-12 76.6 137 37.2
MBI15_g28821_MAGBIO Magnolia biondii HOM05D007655 ORTHO05D009698 6.8e-12 75.9 119 37.0
FAN03G2547 Fragaria x ananassa HOM05D007655 ORTHO05D009698 1.2e-11 75.1 245 46.1
arahy.Tifrunner.gnm1.ann1.P4Y6YZ Arachis hypogaea HOM05D000585 ORTHO05D001841 2.6e-11 73.9 113 40.7
Lalb_Chr19g0131421 Lupinus albus HOM05D007655 ORTHO05D009698 4.4e-11 73.2 82 43.9
ATR0030G034 Amborella trichopoda HOM05D007655 ORTHO05D009698 9.8e-11 72.0 144 33.3
ATR0174G045 Amborella trichopoda HOM05D007655 ORTHO05D009698 3.5e-08 63.5 113 35.4
FAN01G0024 Fragaria x ananassa HOM05D007655 ORTHO05D009698 6.0e-08 62.8 80 42.5
CDE04G2579 Ceratophyllum demersum HOM05D007655 ORTHO05D009698 3.9e-07 60.1 134 32.8
Potri.008G141700 Populus trichocarpa HOM05D007655 ORTHO05D009698 5.6e-06 56.2 57 47.4


User provided reference genes

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