Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G37790 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 6.5e-123 444.1 233 100.0
AT4G03160 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 9.6e-50 201.1 237 54.4
CARHR135120 Cardamine hirsuta HOM05D002733 ORTHO05D003856 5.3e-48 195.3 184 56.5
BcaC01g05431 Brassica carinata HOM05D002733 ORTHO05D003856 1.9e-45 186.8 238 46.2
C03p26740 Brassica napus HOM05D002733 ORTHO05D003856 1.6e-44 183.7 238 45.8
BolC3t15059H Brassica oleracea HOM05D002733 ORTHO05D003856 1.6e-44 183.7 238 45.8
BolC4t28286H Brassica oleracea HOM05D002733 ORTHO05D003856 7.9e-44 181.4 174 55.7
BcaC02g07356 Brassica carinata HOM05D002733 ORTHO05D003856 6.7e-43 178.3 174 55.2
A04p30010 Brassica napus HOM05D002733 ORTHO05D003856 5.7e-42 175.3 175 53.7
BraA04t18506Z Brassica rapa HOM05D002733 ORTHO05D003856 5.7e-42 175.3 175 53.7
Sp4g22050 Schrenkiella parvula HOM05D002733 ORTHO05D003856 1.3e-41 174.1 176 52.3
Sp4g22450 Schrenkiella parvula HOM05D002733 ORTHO05D003856 2.9e-38 162.9 200 48.0
Sp5g18240 Schrenkiella parvula HOM05D002733 ORTHO05D003856 6.5e-38 161.8 192 49.0
C03p26370 Brassica napus HOM05D002733 ORTHO05D003856 8.5e-38 161.4 178 50.6
BolC3t15022H Brassica oleracea HOM05D002733 ORTHO05D003856 1.9e-37 160.2 178 50.0
BraA03t11459Z Brassica rapa HOM05D002733 ORTHO05D003856 1.9e-37 160.2 178 50.0
A03p22270 Brassica napus HOM05D002733 ORTHO05D003856 7.2e-37 158.3 178 49.4
BcaB06g29131 Brassica carinata HOM05D002733 ORTHO05D003856 4.6e-36 155.6 194 47.9
Aa31LG7G1520 Aethionema arabicum HOM05D002733 ORTHO05D003856 7.4e-34 148.3 164 47.6
CARHR135110 Cardamine hirsuta HOM05D002733 ORTHO05D003856 3.7e-33 146.0 142 58.5
Thhalv10003384m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 3.1e-32 142.9 153 47.7
Aa31LG3G6410 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.1e-32 142.5 192 44.8
Aa31LG7G1530 Aethionema arabicum HOM05D002733 ORTHO05D003856 9.1e-32 141.4 187 46.5
Aa31LG8G17140 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.5e-31 139.0 181 44.8
Aa31LG8G11380 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.3e-30 137.5 178 45.5
THA.LOC104810048 Tarenaya hassleriana HOM05D002733 ORTHO05D003856 5.0e-30 135.6 175 41.7
BcaC01g05470 Brassica carinata HOM05D002733 ORTHO05D003856 6.5e-30 135.2 175 46.3
Thhalv10017517m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 6.5e-30 135.2 199 45.7
Aa31LG8G17160 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.2e-29 132.5 187 45.5
Aa31LG8G17170 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.2e-28 131.0 167 44.9
Aa31LG7G1540 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.7e-28 129.8 186 44.1
Aa31LG7G1590 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.0e-27 126.3 180 41.7
BcaB02g09048 Brassica carinata HOM05D002733 ORTHO05D003856 5.1e-27 125.6 163 43.6
Aa31LG8G17150 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.3e-26 122.9 162 43.2
C04p07280 Brassica napus HOM05D002733 ORTHO05D003856 4.4e-26 122.5 159 46.5
BolC4t22351H Brassica oleracea HOM05D002733 ORTHO05D003856 4.4e-26 122.5 159 46.5
Aa31LG8G17210 Aethionema arabicum HOM05D002733 ORTHO05D003856 7.4e-26 121.7 131 48.1
BcaC02g12127 Brassica carinata HOM05D002733 ORTHO05D003856 7.4e-26 121.7 164 45.1
A05p06330 Brassica napus HOM05D002733 ORTHO05D003856 7.4e-26 121.7 164 45.1
AL8G24310 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 2.2e-25 120.2 178 42.1
A05p06630 Brassica napus HOM05D010480 ORTHO05D003856 4.8e-25 119.0 169 39.6
BraA05t19630Z Brassica rapa HOM05D010480 ORTHO05D003856 4.8e-25 119.0 169 39.6
BraA05t19601Z Brassica rapa HOM05D002733 ORTHO05D003856 2.4e-24 116.7 164 45.1
AT4G03170 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 4.1e-24 115.9 172 43.0
AL7G49890 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 5.3e-24 115.5 172 43.6
C04p07760 Brassica napus HOM05D010480 ORTHO05D003856 5.3e-24 115.5 173 38.7
BolC4t22393H Brassica oleracea HOM05D010480 ORTHO05D003856 5.3e-24 115.5 173 38.7
Aa31LG8G17190 Aethionema arabicum HOM05D002733 ORTHO05D003856 9.1e-24 114.8 178 39.3
Aa31LG8G17200 Aethionema arabicum HOM05D002733 ORTHO05D003856 9.1e-24 114.8 131 46.6
Aa31LG7G1510 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.0e-23 113.6 178 39.9
Aa31LG8G17220 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.0e-23 113.6 164 40.2
Sp4g22040 Schrenkiella parvula HOM05D010480 ORTHO05D003856 3.4e-23 112.8 170 40.6
BcaC02g12110 Brassica carinata HOM05D010480 ORTHO05D003856 4.5e-23 112.5 173 37.6
BcaC02g12108 Brassica carinata HOM05D010480 ORTHO05D003856 1.3e-22 110.9 169 37.9
C04p07780 Brassica napus HOM05D010480 ORTHO05D003856 1.3e-22 110.9 169 37.9
BcaC02g12109 Brassica carinata HOM05D010480 ORTHO05D003856 5.0e-22 109.0 175 36.0
BolC4t22394H Brassica oleracea HOM05D010480 ORTHO05D003856 5.0e-22 109.0 175 36.0
Cfa009897 Carpinus fangiana HOM05D002733 ORTHO05D003856 5.0e-22 109.0 160 38.8
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 5.0e-22 109.0 172 37.2
BolC4t22395H Brassica oleracea HOM05D010480 ORTHO05D003856 6.5e-22 108.6 169 37.3
BcaB02g09089 Brassica carinata HOM05D010480 ORTHO05D003856 8.5e-22 108.2 170 35.3
C04p07770 Brassica napus HOM05D010480 ORTHO05D003856 1.1e-21 107.8 177 36.2
Aa31LG7G1600 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.4e-21 107.5 175 40.0
BraA05t19632Z Brassica rapa HOM05D010480 ORTHO05D003856 1.9e-21 107.1 171 37.4
Carub.0003s2754 Capsella rubella HOM05D002733 ORTHO05D003856 2.5e-21 106.7 112 50.9
A05p06660 Brassica napus HOM05D010480 ORTHO05D003856 3.2e-21 106.3 171 36.8
Manes.03G176200 Manihot esculenta HOM05D002733 ORTHO05D003856 1.2e-20 104.4 121 41.3
Carub.0004s2232 Capsella rubella HOM05D002733 ORTHO05D003856 2.7e-20 103.2 173 39.9
CiPaw.03G015000 Carya illinoinensis HOM05D002733 ORTHO05D003856 2.7e-20 103.2 141 39.0
Manes.03G176000 Manihot esculenta HOM05D002733 ORTHO05D003856 2.7e-20 103.2 121 41.3
FvH4_5g06160 Fragaria vesca HOM05D002733 ORTHO05D003856 1.0e-19 101.3 121 43.0
FAN13G0375 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.0e-19 101.3 121 43.0
FAN18G0094 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.0e-19 101.3 121 43.0
A05p06650 Brassica napus HOM05D010480 ORTHO05D003856 1.4e-19 100.9 168 37.5
BraA05t19631Z Brassica rapa HOM05D010480 ORTHO05D003856 1.4e-19 100.9 168 37.5
Potri.001G397100 Populus trichocarpa HOM05D002733 ORTHO05D003856 1.4e-19 100.9 127 40.9
BolC3t19780H Brassica oleracea HOM05D010480 ORTHO05D003856 3.9e-19 99.4 148 39.9
Duzib213G1035 Durio zibethinus HOM05D002733 ORTHO05D003856 3.9e-19 99.4 121 39.7
RcHm_v2.0_Chr7g0192641 Rosa chinensis HOM05D002733 ORTHO05D003856 5.2e-19 99.0 138 41.3
Aa31LG6G10180 Aethionema arabicum HOM05D002733 ORTHO05D003856 8.8e-19 98.2 150 40.7
CiPaw.03G015300 Carya illinoinensis HOM05D002733 ORTHO05D003856 8.8e-19 98.2 121 40.5
Duzib213G0038 Durio zibethinus HOM05D002733 ORTHO05D003856 1.5e-18 97.4 176 34.7
Prupe.7G223900 Prunus persica HOM05D002733 ORTHO05D003856 2.0e-18 97.1 118 43.2
Sabra16G0260100 Salix brachista HOM05D002733 ORTHO05D003856 2.6e-18 96.7 127 39.4
CiPaw.03G014700 Carya illinoinensis HOM05D002733 ORTHO05D003856 3.3e-18 96.3 125 38.4
Peaxi162Scf00023g00136 Petunia axillaris HOM05D002733 ORTHO05D003856 7.4e-18 95.1 144 37.5
Thecc.07G171000 Theobroma cacao HOM05D002733 ORTHO05D003856 9.7e-18 94.7 175 36.6
MD02G1059300 Malus domestica HOM05D002733 ORTHO05D003856 1.3e-17 94.4 120 41.7
CSS0001293 Camellia sinensis var. sinensis HOM05D002733 ORTHO05D003856 1.7e-17 94.0 137 37.2
Nitab4.5_0001888g0040 Nicotiana tabacum HOM05D002733 ORTHO05D003856 4.8e-17 92.4 127 37.0
Actinidia20408 Actinidia chinensis HOM05D002733 ORTHO05D003856 6.3e-17 92.0 148 35.8
DCAR_014131 Daucus carota HOM05D002733 ORTHO05D003856 8.2e-17 91.7 173 30.1
FvH4_1g24261 Fragaria vesca HOM05D002733 ORTHO05D003856 8.2e-17 91.7 121 40.5
FAN26G1179 Fragaria x ananassa HOM05D002733 ORTHO05D003856 8.2e-17 91.7 121 40.5
FAN28G1642 Fragaria x ananassa HOM05D000949 ORTHO05D001276 8.2e-17 91.7 121 40.5
Nitab4.5_0000316g0140 Nicotiana tabacum HOM05D002733 ORTHO05D003856 8.2e-17 91.7 127 37.0
Cpa.g.sc81.85 Carica papaya HOM05D002733 ORTHO05D003856 1.1e-16 91.3 117 41.0
Prupe.7G223800 Prunus persica HOM05D002733 ORTHO05D003856 1.1e-16 91.3 118 40.7
Hma1.2p1_1080F.1_g255020 Hydrangea macrophylla HOM05D002733 ORTHO05D003856 1.8e-16 90.5 116 40.5
Aa31LG7G1550 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.4e-16 90.1 173 36.4
CiPaw.03G014800 Carya illinoinensis HOM05D002733 ORTHO05D003856 4.1e-16 89.4 123 39.8
RcHm_v2.0_Chr2g0120751 Rosa chinensis HOM05D002733 ORTHO05D003856 4.1e-16 89.4 118 40.7
AT1G20600 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 5.3e-16 89.0 148 43.2
Rhsim05G0042200 Rhododendron simsii HOM05D002733 ORTHO05D003856 5.3e-16 89.0 134 40.3
Sed0022151 Sechium edule HOM05D002733 ORTHO05D003856 9.1e-16 88.2 121 40.5
FvH4_1g16231 Fragaria vesca HOM05D002733 ORTHO05D003856 2.6e-15 86.7 160 34.4
FAN23G1126 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.6e-15 86.7 175 32.6
CAN.G1774.3 Capsicum annuum HOM05D002733 ORTHO05D003856 3.5e-15 86.3 114 36.8
Lj1g0000886 Lotus japonicus HOM05D002733 ORTHO05D003856 3.5e-15 86.3 120 38.3
Ciclev10010395m.g Citrus clementina HOM05D002733 ORTHO05D003856 1.0e-14 84.7 124 37.1
Duzib168G2229 Durio zibethinus HOM05D002733 ORTHO05D003856 1.0e-14 84.7 121 39.7
Cfa016245 Carpinus fangiana HOM05D002733 ORTHO05D003856 1.3e-14 84.3 136 34.6
DCAR_003269 Daucus carota HOM05D002733 ORTHO05D003856 1.3e-14 84.3 114 37.7
PGSC0003DMG400000368 Solanum tuberosum HOM05D002733 ORTHO05D003856 1.3e-14 84.3 114 38.6
FAN19G2118 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.7e-14 84.0 157 33.1
Actinidia09441 Actinidia chinensis HOM05D002733 ORTHO05D003856 2.2e-14 83.6 143 33.6
Aa31LG7G1580 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.2e-14 83.6 119 41.2
Gohir.A06G065650 Gossypium hirsutum HOM05D002733 ORTHO05D003856 2.9e-14 83.2 132 34.8
Thecc.09G104200 Theobroma cacao HOM05D002733 ORTHO05D003856 2.9e-14 83.2 131 37.4
TPR.G8024 Trifolium pratense HOM05D002733 ORTHO05D003856 2.9e-14 83.2 115 35.7
QL02p042555 Quercus lobata HOM05D002733 ORTHO05D003856 3.8e-14 82.8 141 35.5
Gorai.010G075000 Gossypium raimondii HOM05D002733 ORTHO05D003856 5.0e-14 82.4 132 34.8
TPR.G1395 Trifolium pratense HOM05D002733 ORTHO05D003856 5.0e-14 82.4 115 35.7
Medtr3g013920 Medicago truncatula HOM05D002733 ORTHO05D003856 6.5e-14 82.0 116 33.6
Haze_00185 Corylus avellana HOM05D002733 ORTHO05D003856 8.5e-14 81.6 114 39.5
DCAR_003268 Daucus carota HOM05D002733 ORTHO05D003856 8.5e-14 81.6 113 36.3
CsaV3_3G004840 Cucumis sativus L. HOM05D002733 ORTHO05D003856 1.1e-13 81.3 114 41.2
Medtr0267s0030 Medicago truncatula HOM05D002733 ORTHO05D003856 1.1e-13 81.3 116 33.6
Medtr3g013900 Medicago truncatula HOM05D002733 ORTHO05D003856 1.5e-13 80.9 116 33.6
QL02p042807 Quercus lobata HOM05D002733 ORTHO05D003856 1.5e-13 80.9 141 34.8
Gohir.D06G064250 Gossypium hirsutum HOM05D002733 ORTHO05D003856 1.9e-13 80.5 119 36.1
TPR.G12039 Trifolium pratense HOM05D002733 ORTHO05D003856 1.9e-13 80.5 115 34.8
MELO3C004101.2 Cucumis melo HOM05D002733 ORTHO05D003856 2.5e-13 80.1 114 39.5
Eucgr.L02178 Eucalyptus grandis HOM05D002733 ORTHO05D003856 2.5e-13 80.1 135 37.8
Medtr3g013820 Medicago truncatula HOM05D002733 ORTHO05D003856 2.5e-13 80.1 116 32.8
FAN23G1485 Fragaria x ananassa HOM05D002733 ORTHO05D003856 3.2e-13 79.7 160 31.2
MD02G1060300 Malus domestica HOM05D002733 ORTHO05D003856 3.2e-13 79.7 110 40.0
MD15G1316300 Malus domestica HOM05D002733 ORTHO05D003856 3.2e-13 79.7 113 38.1
Medtr3g013810 Medicago truncatula HOM05D002733 ORTHO05D003856 4.2e-13 79.3 116 32.8
MD00G1107900 Malus domestica HOM05D002733 ORTHO05D003856 5.5e-13 79.0 111 39.6
Haze_00196 Corylus avellana HOM05D002733 ORTHO05D003856 9.4e-13 78.2 114 39.5
COL.COLO4_34789 Corchorus olitorius HOM05D002733 ORTHO05D003856 1.2e-12 77.8 179 34.6
Solyc12g007300.1 Solanum lycopersicum HOM05D002733 ORTHO05D003856 1.2e-12 77.8 129 35.7
Sopen12g003260 Solanum pennellii HOM05D002733 ORTHO05D003856 1.2e-12 77.8 129 35.7
TPR.G1412 Trifolium pratense HOM05D002733 ORTHO05D003856 4.7e-12 75.9 214 29.4
VMungo1080G0152 Vigna mungo HOM05D002733 ORTHO05D003856 8.0e-12 75.1 115 39.1
Ciclev10007038m.g Citrus clementina HOM05D002733 ORTHO05D003856 1.0e-11 74.7 163 31.9
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 1.0e-11 74.7 132 34.8
Lj3g0006952 Lotus japonicus HOM05D002733 ORTHO05D003856 1.4e-11 74.3 116 37.9
Eucgr.C01014 Eucalyptus grandis HOM05D002733 ORTHO05D003856 2.3e-11 73.6 124 34.7
Glyma.04G133200 Glycine max HOM05D002733 ORTHO05D003856 4.0e-11 72.8 153 30.7
VMungo1080G0686 Vigna mungo HOM05D002733 ORTHO05D003856 6.7e-11 72.0 110 38.2
Haze_00197 Corylus avellana HOM05D002733 ORTHO05D003856 8.8e-11 71.6 114 37.7
Phvul.005G031300 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 8.8e-11 71.6 114 37.7
DCAR_028226 Daucus carota HOM05D002733 ORTHO05D003856 1.2e-10 71.2 118 36.4
QL01p018939 Quercus lobata HOM05D002733 ORTHO05D003856 2.6e-10 70.1 163 30.7
Prupe.7G224000 Prunus persica HOM05D002733 ORTHO05D003856 5.7e-10 68.9 118 39.0
Prupe.7G224100 Prunus persica HOM05D002733 ORTHO05D003856 5.7e-10 68.9 122 33.6
Peaxi162Scf00665g00139 Petunia axillaris HOM05D002733 ORTHO05D003856 1.7e-09 67.4 123 35.0
QL01p018928 Quercus lobata HOM05D002733 ORTHO05D003856 1.7e-09 67.4 182 29.7
TPR.G1447 Trifolium pratense HOM05D002733 ORTHO05D003856 1.7e-09 67.4 128 35.9
Sed0027145 Sechium edule HOM05D002733 ORTHO05D003856 3.7e-09 66.2 114 37.7
COL.COLO4_32232 Corchorus olitorius HOM05D002733 ORTHO05D003856 1.1e-08 64.7 112 35.7
Aqoxy1G01499 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 1.8e-08 63.9 167 32.9
Cfa016244 Carpinus fangiana HOM05D002733 ORTHO05D003856 3.1e-08 63.2 118 31.4
PGSC0003DMG400000106 Solanum tuberosum HOM05D015341 ORTHO05D011718 3.1e-08 63.2 156 30.1
Aa31LG6G9550 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.1e-08 62.8 75 45.3
QL01p018935 Quercus lobata HOM05D002733 ORTHO05D003856 1.2e-07 61.2 109 34.9
Dinv41650 Davidia involucrata HOM05D002733 ORTHO05D003856 2.0e-07 60.5 101 34.7
Sed0017653 Sechium edule HOM05D002733 ORTHO05D003856 2.0e-07 60.5 149 30.9
PSO566G0305 Papaver somniferum HOM05D002733 ORTHO05D003856 2.7e-07 60.1 105 36.2
Peaxi162Scf00665g00148 Petunia axillaris HOM05D002733 ORTHO05D003856 5.9e-07 58.9 115 31.3
CiPaw.03G015100 Carya illinoinensis HOM05D002733 ORTHO05D003856 7.7e-07 58.5 160 31.2
Phvul.005G028900 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 7.7e-07 58.5 114 30.7
ATR1159G057 Amborella trichopoda HOM05D020218 ORTHO05D013427 1.0e-06 58.2 108 30.6
Peaxi162Scf00665g00126 Petunia axillaris HOM05D002733 ORTHO05D003856 1.0e-06 58.2 151 27.8
Aqoxy1G01498 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 3.8e-06 56.2 105 35.2


User provided reference genes

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