Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G37770 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 2.9e-96 355.1 172 100.0
AT2G40113 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 3.0e-88 328.6 172 93.6
Carub.0004s2229 Capsella rubella HOM05D003761 ORTHO05D004412 5.4e-82 307.8 172 87.8
Sp4g22430 Schrenkiella parvula HOM05D003761 ORTHO05D004412 1.3e-72 276.6 173 78.6
BraA04t18501Z Brassica rapa HOM05D003761 ORTHO05D004412 3.0e-72 275.4 172 80.2
A05p06360 Brassica napus HOM05D003761 ORTHO05D004412 5.1e-72 274.6 173 79.2
BolC4t22355H Brassica oleracea HOM05D003761 ORTHO05D004412 5.1e-72 274.6 173 79.2
BraA05t19604Z Brassica rapa HOM05D003761 ORTHO05D004412 5.1e-72 274.6 173 79.2
A04p30050 Brassica napus HOM05D003761 ORTHO05D004412 8.6e-72 273.9 172 79.7
CARHR135090 Cardamine hirsuta HOM05D003761 ORTHO05D004412 1.9e-71 272.7 167 82.0
BolC4t28284H Brassica oleracea HOM05D003761 ORTHO05D004412 4.0e-69 265.0 172 77.3
BcaB02g09050 Brassica carinata HOM05D003761 ORTHO05D004412 1.5e-68 263.1 172 77.3
BcaC02g07354 Brassica carinata HOM05D003761 ORTHO05D004412 2.6e-68 262.3 172 75.6
Thhalv10017342m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 2.2e-67 259.2 155 80.6
BcaB02g09051 Brassica carinata HOM05D003761 ORTHO05D004412 1.1e-66 256.9 172 76.7
BcaB06g29129 Brassica carinata HOM05D003761 ORTHO05D004412 4.3e-63 245.0 173 72.8
AT5G47635 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 4.0e-53 211.8 170 67.6
Thhalv10001056m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 4.0e-53 211.8 171 66.1
AL8G10320 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 7.6e-52 207.6 170 65.9
Sp2g12340 Schrenkiella parvula HOM05D003761 ORTHO05D004412 9.9e-52 207.2 170 65.3
A06p44900 Brassica napus HOM05D003761 ORTHO05D004412 8.4e-51 204.1 171 64.9
BcaC04g21612 Brassica carinata HOM05D003761 ORTHO05D004412 1.4e-50 203.4 170 64.7
C09p29870 Brassica napus HOM05D003761 ORTHO05D004412 1.4e-50 203.4 170 64.7
BolC7t43669H Brassica oleracea HOM05D003761 ORTHO05D004412 2.4e-50 202.6 162 67.3
A09p23140 Brassica napus HOM05D003761 ORTHO05D004412 5.4e-50 201.4 160 65.6
BraA06t27361Z Brassica rapa HOM05D003761 ORTHO05D004412 5.4e-50 201.4 171 64.3
BraA09t37917Z Brassica rapa HOM05D003761 ORTHO05D004412 5.4e-50 201.4 160 65.6
CARHR173680 Cardamine hirsuta HOM05D003761 ORTHO05D004412 9.3e-50 200.7 162 67.3
Aa31LG9G5380 Aethionema arabicum HOM05D003761 ORTHO05D004412 1.3e-48 196.8 175 61.1
BcaC06g31357 Brassica carinata HOM05D003761 ORTHO05D004412 1.3e-48 196.8 164 64.6
Carub.0008s0015 Capsella rubella HOM05D003761 ORTHO05D004412 2.3e-48 196.1 170 64.1
C07p31280 Brassica napus HOM05D003761 ORTHO05D004412 3.0e-48 195.7 177 62.1
Aa31LG5G19480 Aethionema arabicum HOM05D003761 ORTHO05D004412 4.5e-44 181.8 160 59.4
BcaB07g30768 Brassica carinata HOM05D003761 ORTHO05D004412 3.8e-43 178.7 147 64.6
BcaC06g34236 Brassica carinata HOM05D003761 ORTHO05D004412 4.2e-42 175.3 155 61.9
Thhalv10026465m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 1.8e-40 169.9 157 59.2
THA.LOC104806736 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 8.7e-40 167.5 161 56.5
BraA01t01941Z Brassica rapa HOM05D003761 ORTHO05D004412 1.9e-39 166.4 137 62.8
BcaC09g50449 Brassica carinata HOM05D003761 ORTHO05D004412 7.4e-39 164.5 159 57.9
C01p25300 Brassica napus HOM05D003761 ORTHO05D004412 7.4e-39 164.5 159 57.9
BolC1t02480H Brassica oleracea HOM05D003761 ORTHO05D004412 7.4e-39 164.5 159 57.9
C04p67800 Brassica napus HOM05D003761 ORTHO05D004412 1.6e-38 163.3 98 80.6
BcaNung03472 Brassica carinata HOM05D003761 ORTHO05D004412 2.1e-38 162.9 147 57.1
CARHR223820 Cardamine hirsuta HOM05D003761 ORTHO05D004412 2.4e-37 159.5 152 56.6
Carub.0007s2420 Capsella rubella HOM05D003761 ORTHO05D004412 3.1e-37 159.1 152 57.2
AL7G37500 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 4.0e-37 158.7 128 62.5
AT4G17215 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 1.2e-36 157.1 152 57.2
BcaC06g33549 Brassica carinata HOM05D003761 ORTHO05D004412 1.2e-36 157.1 153 57.5
A03p50350 Brassica napus HOM05D003761 ORTHO05D004412 1.2e-36 157.1 153 57.5
C07p48660 Brassica napus HOM05D003761 ORTHO05D004412 1.2e-36 157.1 153 57.5
BolC7t45373H Brassica oleracea HOM05D003761 ORTHO05D004412 1.2e-36 157.1 153 57.5
BraA03t14124Z Brassica rapa HOM05D003761 ORTHO05D004412 1.2e-36 157.1 153 57.5
Sp7g16980 Schrenkiella parvula HOM05D003761 ORTHO05D004412 1.7e-35 153.3 157 54.1
BcaNung03474 Brassica carinata HOM05D003761 ORTHO05D004412 9.3e-34 147.5 153 54.2
BcaNung00112 Brassica carinata HOM05D003761 ORTHO05D004412 2.7e-33 146.0 135 56.3
THA.LOC104798379 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 5.7e-31 138.3 150 49.3
BolC9t55850H Brassica oleracea HOM05D003761 ORTHO05D004412 4.8e-30 135.2 102 66.7
CANSAT56G1869 Cannabis sativa HOM05D003761 ORTHO05D004412 5.0e-27 125.2 177 40.1
Lj2C256G8 Lonicera japonica HOM05D003761 ORTHO05D004412 9.3e-26 120.9 136 44.9
Hma1.2p1_1175F.1_g263990 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 2.7e-25 119.4 142 41.5
Lalb_Chr13g0304361 Lupinus albus HOM05D003761 ORTHO05D004412 2.7e-25 119.4 142 47.2
Sc24g0000400 Simmondsia chinensis HOM05D003761 ORTHO05D004412 6.1e-25 118.2 137 47.4
EL10Ac8g20260 Beta vulgaris HOM05D003761 ORTHO05D004412 7.9e-25 117.9 134 46.3
MSTRG.14590 Avicennia marina HOM05D003761 ORTHO05D004412 1.8e-24 116.7 141 46.1
COL.COLO4_31936 Corchorus olitorius HOM05D003761 ORTHO05D004412 1.8e-24 116.7 130 46.2
ECA248G3040 Erigeron canadensis HOM05D003761 ORTHO05D004412 2.3e-24 116.3 163 41.7
Migut.H01629 Erythranthe guttata HOM05D003761 ORTHO05D004412 3.9e-24 115.5 133 47.4
Thecc.06G240300 Theobroma cacao HOM05D003761 ORTHO05D004412 3.9e-24 115.5 135 45.2
Duzib192G0597 Durio zibethinus HOM05D003761 ORTHO05D004412 8.7e-24 114.4 140 42.1
Cpa.g.sc27.232 Carica papaya HOM05D003761 ORTHO05D004412 1.5e-23 113.6 153 38.6
Oeu057021.1 Olea europaea HOM05D003761 ORTHO05D004412 1.5e-23 113.6 132 45.5
QL05p067831 Quercus lobata HOM05D003761 ORTHO05D004412 1.9e-23 113.2 140 43.6
vmacro03612 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 2.5e-23 112.8 170 37.1
Actinidia39257 Actinidia chinensis HOM05D003761 ORTHO05D004412 3.3e-23 112.5 138 43.5
Nn1g07502 Nelumbo nucifera HOM05D003761 ORTHO05D004412 3.3e-23 112.5 134 44.0
Ciclev10016770m.g Citrus clementina HOM05D003761 ORTHO05D004412 4.3e-23 112.1 164 39.0
Haze_07014 Corylus avellana HOM05D003761 ORTHO05D004412 4.3e-23 112.1 165 40.0
Lsat_1_v5_gn_7_13080 Lactuca sativa HOM05D003761 ORTHO05D004412 4.3e-23 112.1 178 39.3
Cfa000041 Carpinus fangiana HOM05D003761 ORTHO05D004412 5.7e-23 111.7 165 40.0
Aa31LG2G12410 Aethionema arabicum HOM05D003761 ORTHO05D004412 9.7e-23 110.9 152 44.1
Rhsim13G0141000 Rhododendron simsii HOM05D003761 ORTHO05D004412 9.7e-23 110.9 171 36.8
Lsat_1_v5_gn_1_130120 Lactuca sativa HOM05D003761 ORTHO05D004412 1.3e-22 110.5 169 40.2
Lalb_Chr15g0088211 Lupinus albus HOM05D003761 ORTHO05D004412 1.3e-22 110.5 170 39.4
TAR626G0912 Trochodendron aralioides HOM05D003761 ORTHO05D004412 1.3e-22 110.5 185 41.1
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 1.7e-22 110.2 173 38.2
CiPaw.09G108600 Carya illinoinensis HOM05D003761 ORTHO05D004412 2.2e-22 109.8 166 42.2
Dinv15342 Davidia involucrata HOM05D003761 ORTHO05D004412 2.2e-22 109.8 129 44.2
MBI18_g42884_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 2.2e-22 109.8 165 41.2
SGA_v2.0_scaffold186G40120 Striga asiatica HOM05D003761 ORTHO05D004412 2.2e-22 109.8 131 45.0
Eucgr.L00155 Eucalyptus grandis HOM05D003761 ORTHO05D004412 2.8e-22 109.4 189 37.0
PGR042G2523 Punica granatum HOM05D003761 ORTHO05D004412 2.8e-22 109.4 166 40.4
Sopen11g007440 Solanum pennellii HOM05D003761 ORTHO05D004412 3.7e-22 109.0 141 44.7
Cc09_g00350 Coffea canephora HOM05D003761 ORTHO05D004412 4.8e-22 108.6 145 41.4
Oeu025960.1 Olea europaea HOM05D003761 ORTHO05D004412 4.8e-22 108.6 162 39.5
Solyc11g012705.2 Solanum lycopersicum HOM05D003761 ORTHO05D004412 4.8e-22 108.6 141 44.7
CSS0009294 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 6.3e-22 108.2 144 39.6
CSS0045719 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 6.3e-22 108.2 144 39.6
Lj6g0023004 Lotus japonicus HOM05D003761 ORTHO05D004412 6.3e-22 108.2 168 39.9
PGSC0003DMG400013274 Solanum tuberosum HOM05D003761 ORTHO05D004412 8.2e-22 107.8 139 41.0
GSVIVG01005138001 Vitis vinifera HOM05D003761 ORTHO05D004412 8.2e-22 107.8 131 44.3
HanXRQChr15g0470241 Helianthus annuus HOM05D003761 ORTHO05D004412 1.1e-21 107.5 150 43.3
Oeu002779.1 Olea europaea HOM05D003761 ORTHO05D004412 1.4e-21 107.1 134 44.8
AUR62021816 Chenopodium quinoa HOM05D003761 ORTHO05D004412 1.8e-21 106.7 140 44.3
PGSC0003DMG400013298 Solanum tuberosum HOM05D003761 ORTHO05D004412 1.8e-21 106.7 170 42.9
Actinidia11903 Actinidia chinensis HOM05D003761 ORTHO05D004412 2.4e-21 106.3 171 38.6
Glyma.17G005900 Glycine max HOM05D003761 ORTHO05D004412 2.4e-21 106.3 139 43.9
vmacro03611 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 3.1e-21 105.9 138 40.6
vmacro23224 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 3.1e-21 105.9 138 40.6
Gohir.D06G217400 Gossypium hirsutum HOM05D003761 ORTHO05D004412 4.1e-21 105.5 137 40.9
Sopen11g006960 Solanum pennellii HOM05D003761 ORTHO05D004412 4.1e-21 105.5 139 40.3
SGA_v2.0_scaffold49G18223 Striga asiatica HOM05D003761 ORTHO05D004412 4.1e-21 105.5 159 41.5
CsaV3_1G015780 Cucumis sativus L. HOM05D003761 ORTHO05D004412 6.9e-21 104.8 147 42.2
CsaV3_UNG065500 Cucumis sativus L. HOM05D003761 ORTHO05D004412 6.9e-21 104.8 147 42.2
Prupe.4G004300 Prunus persica HOM05D003761 ORTHO05D004412 6.9e-21 104.8 146 38.4
DCAR_030834 Daucus carota HOM05D003761 ORTHO05D004412 9.1e-21 104.4 136 41.9
FAN25G2178 Fragaria x ananassa HOM05D003761 ORTHO05D004412 9.1e-21 104.4 148 41.9
Gohir.A06G204100 Gossypium hirsutum HOM05D003761 ORTHO05D004412 9.1e-21 104.4 138 40.6
Solyc11g012170.1 Solanum lycopersicum HOM05D003761 ORTHO05D004412 9.1e-21 104.4 139 40.3
CAN.G1186.30 Capsicum annuum HOM05D003761 ORTHO05D004412 1.2e-20 104.0 169 38.5
Eucgr.E03855 Eucalyptus grandis HOM05D003761 ORTHO05D004412 1.5e-20 103.6 134 41.8
Manes.09G083000 Manihot esculenta HOM05D003761 ORTHO05D004412 1.5e-20 103.6 139 42.4
Actinidia02285 Actinidia chinensis HOM05D000829 ORTHO05D000690 2.0e-20 103.2 124 44.4
FvH4_3g00370 Fragaria vesca HOM05D003761 ORTHO05D004412 2.0e-20 103.2 146 41.1
AUR62012843 Chenopodium quinoa HOM05D003761 ORTHO05D004412 2.6e-20 102.8 141 43.3
Gorai.010G248800 Gossypium raimondii HOM05D003761 ORTHO05D004412 2.6e-20 102.8 137 40.1
Lj4g0001357 Lotus japonicus HOM05D003761 ORTHO05D004412 3.4e-20 102.4 143 42.0
CAN.G1156.14 Capsicum annuum HOM05D003761 ORTHO05D004412 4.5e-20 102.1 135 42.2
Peaxi162Scf00442g00073 Petunia axillaris HOM05D003761 ORTHO05D004412 4.5e-20 102.1 138 42.8
Eucgr.L00154 Eucalyptus grandis HOM05D003761 ORTHO05D004412 5.9e-20 101.7 185 36.8
Peaxi162Scf00558g00515 Petunia axillaris HOM05D003761 ORTHO05D004412 5.9e-20 101.7 138 42.0
Psat4g002880 Pisum sativum HOM05D003761 ORTHO05D004412 5.9e-20 101.7 149 41.6
FAN21G2431 Fragaria x ananassa HOM05D003761 ORTHO05D004412 7.7e-20 101.3 144 40.3
MBI18_g27019_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 7.7e-20 101.3 128 41.4
Sed0014180 Sechium edule HOM05D003761 ORTHO05D004412 7.7e-20 101.3 147 40.8
MELO3C025526.2 Cucumis melo HOM05D003761 ORTHO05D004412 1.0e-19 100.9 147 40.8
HanXRQChr01g0003591 Helianthus annuus HOM05D003761 ORTHO05D004412 1.0e-19 100.9 160 37.5
MD10G1338600 Malus domestica HOM05D003761 ORTHO05D004412 1.3e-19 100.5 152 38.2
SGA_v2.0_scaffold7G03701 Striga asiatica HOM05D003761 ORTHO05D004412 1.3e-19 100.5 132 42.4
MD05G1360900 Malus domestica HOM05D003761 ORTHO05D004412 1.7e-19 100.1 150 36.7
SalBow8G1906 Salvia bowleyana HOM05D003761 ORTHO05D004412 1.7e-19 100.1 162 38.9
arahy.Tifrunner.gnm1.ann1.UZ71G8 Arachis hypogaea HOM05D003761 ORTHO05D004412 2.2e-19 99.8 178 37.6
MSTRG.7132 Avicennia marina HOM05D003761 ORTHO05D004412 2.2e-19 99.8 158 39.2
Ca_20995_v3 Cicer arietinum L. HOM05D003761 ORTHO05D004412 2.2e-19 99.8 138 44.9
arahy.Tifrunner.gnm1.ann1.YY2BB8 Arachis hypogaea HOM05D003761 ORTHO05D004412 2.9e-19 99.4 179 37.4
Sabra06G0004500 Salix brachista HOM05D003761 ORTHO05D004412 3.8e-19 99.0 166 35.5
TWI38G1412 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 3.8e-19 99.0 158 38.6
Sed0021615 Sechium edule HOM05D003761 ORTHO05D004412 5.0e-19 98.6 147 40.1
ClCG01G010750 Citrullus lanatus HOM05D003761 ORTHO05D004412 6.5e-19 98.2 143 39.9
HPP92_024932 Vanilla planifolia HOM05D003761 ORTHO05D004412 6.5e-19 98.2 132 40.9
HPP92_024936 Vanilla planifolia HOM05D003761 ORTHO05D004412 6.5e-19 98.2 132 40.9
Phvul.003G086700 Phaseolus vulgaris HOM05D003761 ORTHO05D004412 8.5e-19 97.8 133 41.4
VMungo1215G0779 Vigna mungo HOM05D003761 ORTHO05D004412 8.5e-19 97.8 133 40.6
MSTRG.13107 Avicennia marina HOM05D003761 ORTHO05D004412 1.1e-18 97.4 136 39.0
CDE10G1059 Ceratophyllum demersum HOM05D003761 ORTHO05D004412 1.1e-18 97.4 130 38.5
MBI19_g14888_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 1.1e-18 97.4 154 38.3
Oeu025400.1 Olea europaea HOM05D003761 ORTHO05D004412 1.1e-18 97.4 136 38.2
PSO675G1588 Papaver somniferum HOM05D003761 ORTHO05D004412 1.1e-18 97.4 171 36.8
Atru.chr1.2273 Acer truncatum HOM05D003761 ORTHO05D004412 1.4e-18 97.1 133 39.8
PSO541G3650 Papaver somniferum HOM05D003761 ORTHO05D004412 1.4e-18 97.1 171 36.8
Potri.006G005600 Populus trichocarpa HOM05D003761 ORTHO05D004412 1.4e-18 97.1 168 35.7
TPR.G5987 Trifolium pratense HOM05D003761 ORTHO05D004412 1.4e-18 97.1 134 44.0
TWI38G2030 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 1.4e-18 97.1 141 39.7
Medtr4g133932 Medicago truncatula HOM05D003761 ORTHO05D004412 1.9e-18 96.7 155 39.4
Nitab4.5_0000143g0280 Nicotiana tabacum HOM05D003761 ORTHO05D004412 4.2e-18 95.5 142 40.1
PGR004G2813 Punica granatum HOM05D003761 ORTHO05D004412 4.2e-18 95.5 157 36.9
Potri.016G006200 Populus trichocarpa HOM05D003761 ORTHO05D004412 7.2e-18 94.7 169 35.5
Ah.09g233900 Amaranthus hybridus HOM05D003761 ORTHO05D004412 6.1e-17 91.7 138 39.1
Os10g0208600 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 1.8e-16 90.1 152 36.2
unitig_52.g17560 Utricularia gibba HOM05D003761 ORTHO05D004412 5.1e-16 88.6 202 32.7
Hma1.2p1_1175F.1_g263980 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 6.7e-16 88.2 91 46.2
Os10g0206500 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 3.3e-15 85.9 144 36.1
Sabra16G0011000 Salix brachista HOM05D003761 ORTHO05D004412 4.4e-15 85.5 172 32.6
Nitab4.5_0001198g0070 Nicotiana tabacum HOM05D003761 ORTHO05D004412 1.7e-14 83.6 165 36.4
Migut.M01442 Erythranthe guttata HOM05D003761 ORTHO05D004412 1.4e-13 80.5 176 35.8
Zm00001eb050510 Zea mays HOM05D003761 ORTHO05D004412 9.1e-13 77.8 148 31.8
Sc05g0009870 Simmondsia chinensis HOM05D003761 ORTHO05D004412 2.0e-12 76.6 103 43.7
ATR0827G170 Amborella trichopoda HOM05D003761 ORTHO05D004412 1.3e-11 73.9 111 35.1
Cpa.g.sc27.234 Carica papaya HOM05D003761 ORTHO05D004412 5.0e-11 72.0 105 36.2
C02p48790 Brassica napus HOM05D003761 ORTHO05D039658 1.1e-10 70.9 94 44.7
BcaC03g16979 Brassica carinata HOM05D003761 ORTHO05D039658 5.5e-10 68.6 66 56.1
Dinv34907 Davidia involucrata HOM05D003328 ORTHO05D003722 1.3e-06 57.4 120 33.3


User provided reference genes

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