Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 7.6e-250 866.7 436 100.0
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 4.3e-237 824.3 436 94.7
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 2.0e-229 798.9 442 92.1
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 1.3e-228 796.2 436 91.3
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 2.0e-226 788.9 437 90.6
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 3.0e-222 775.0 439 88.6
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 4.1e-211 738.0 437 84.7
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 1.8e-206 722.6 436 82.1
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 2.3e-206 722.2 436 81.4
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 8.3e-204 713.8 436 82.8
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 1.1e-203 713.4 436 81.2
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 1.8e-203 712.6 436 80.5
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 7.0e-203 710.7 436 81.2
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 3.3e-200 701.8 437 79.2
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 4.2e-200 701.4 437 79.2
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 1.2e-199 699.9 437 78.7
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 1.0e-198 696.8 437 78.5
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 9.8e-197 690.3 437 78.0
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 9.8e-197 690.3 437 78.0
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 7.8e-194 680.6 439 78.1
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 1.3e-188 663.3 437 76.0
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 1.3e-188 663.3 437 76.0
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 1.2e-186 656.8 437 74.8
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 4.6e-186 654.8 437 74.8
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 6.2e-183 644.4 436 73.9
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 6.8e-182 641.0 442 73.5
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 3.7e-180 635.2 439 74.3
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 1.2e-175 620.2 440 72.5
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 8.1e-175 617.5 438 73.1
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 6.8e-174 614.4 438 72.1
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 6.8e-174 614.4 439 71.8
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 3.5e-170 602.1 417 73.9
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 6.6e-169 597.8 438 70.3
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 6.6e-169 597.8 438 70.3
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 6.6e-169 597.8 438 70.3
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 1.5e-168 596.7 438 70.3
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 1.5e-168 596.7 438 70.8
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 5.3e-158 561.6 468 61.5
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 6.6e-153 544.7 469 60.6
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 1.7e-148 530.0 466 57.1
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 6.4e-148 528.1 465 58.5
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 3.2e-147 525.8 466 57.9
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 2.7e-146 522.7 442 59.0
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 3.5e-146 522.3 465 57.4
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 6.0e-146 521.5 468 58.5
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 6.0e-146 521.5 437 60.2
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 1.0e-145 520.8 466 57.7
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.9e-145 518.8 458 57.4
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 6.7e-145 518.1 470 55.7
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 6.7e-145 518.1 466 57.1
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 8.7e-145 517.7 467 56.1
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.5e-144 516.9 458 57.2
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 3.3e-144 515.8 470 57.2
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 4.3e-144 515.4 466 56.0
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 7.4e-144 514.6 467 55.9
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.6e-143 513.5 458 57.0
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.1e-143 513.1 464 56.9
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 2.8e-143 512.7 464 56.9
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 3.7e-143 512.3 468 57.7
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 6.2e-143 511.5 466 55.4
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 8.1e-143 511.1 467 54.6
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 2.4e-142 509.6 468 55.3
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 4.0e-142 508.8 465 55.7
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 5.3e-142 508.4 467 55.5
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 6.9e-142 508.1 464 56.5
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 9.0e-142 507.7 469 55.4
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 2.6e-141 506.1 458 55.7
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 4.5e-141 505.4 473 54.1
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 4.5e-141 505.4 467 55.0
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 4.9e-140 501.9 473 53.3
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 4.9e-140 501.9 466 55.2
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 3.2e-139 499.2 471 54.1
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 4.2e-139 498.8 467 54.4
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 5.5e-139 498.4 469 55.0
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 2.1e-138 496.5 458 54.1
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 6.0e-138 495.0 468 55.1
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 7.9e-138 494.6 466 54.7
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 2.3e-137 493.0 470 53.2
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 3.9e-137 492.3 473 55.0
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 6.7e-137 491.5 449 56.3
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 8.7e-137 491.1 466 56.2
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 1.1e-136 490.7 453 54.7
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 1.5e-136 490.3 448 57.1
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 3.3e-136 489.2 464 53.0
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 8.2e-135 484.6 468 53.6
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 5.3e-134 481.9 451 53.7
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 1.2e-133 480.7 473 53.1
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 1.5e-133 480.3 478 53.6
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 3.4e-133 479.2 469 52.7
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 4.5e-133 478.8 479 52.8
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 7.6e-133 478.0 458 52.6
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 1.3e-132 477.2 459 53.6
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 2.9e-132 476.1 454 54.0
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 2.9e-132 476.1 470 52.8
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 6.5e-132 474.9 473 53.7
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 8.4e-132 474.6 454 54.0
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 1.1e-131 474.2 470 53.2
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 3.2e-131 472.6 452 53.1
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 5.5e-131 471.9 457 54.5
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 7.1e-131 471.5 454 51.8
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 9.3e-131 471.1 464 53.2
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 1.3e-129 467.2 450 52.4
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 3.0e-129 466.1 447 53.0
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 5.1e-129 465.3 471 52.7
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 1.5e-128 463.8 473 52.2
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 4.3e-128 462.2 455 53.6
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 4.8e-127 458.8 469 52.5
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 1.1e-126 457.6 324 71.0
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 1.1e-126 457.6 463 51.6
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 1.8e-126 456.8 448 52.0
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 2.4e-126 456.4 463 51.6
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 2.4e-126 456.4 438 57.5
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 4.1e-126 455.7 448 54.5
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 9.0e-126 454.5 452 51.3
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 1.5e-125 453.8 462 51.9
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 2.6e-125 453.0 465 51.8
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 3.4e-125 452.6 449 51.9
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 1.0e-124 451.1 473 49.5
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.0e-124 451.1 467 50.5
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 1.3e-124 450.7 448 52.2
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 2.9e-124 449.5 447 51.7
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 1.1e-123 447.6 444 51.6
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 1.4e-123 447.2 452 49.1
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 1.4e-123 447.2 458 50.7
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 1.2e-122 444.1 464 50.4
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 1.6e-122 443.7 452 50.2
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 1.6e-122 443.7 447 51.2
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 2.1e-122 443.4 467 50.5
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.4e-121 440.7 467 49.5
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 3.9e-121 439.1 444 51.1
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 8.8e-121 438.0 433 51.5
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.5e-120 437.2 465 50.8
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 7.4e-120 434.9 433 52.9
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 9.7e-120 434.5 471 51.2
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.7e-119 433.7 462 50.0
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 6.3e-119 431.8 466 50.4
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 6.5e-116 421.8 447 49.2
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 6.1e-114 415.2 442 49.3
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 1.4e-110 404.1 468 46.2
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 4.1e-110 402.5 400 51.8
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 2.3e-105 386.7 380 52.1
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 1.4e-102 377.5 416 48.1
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 7.0e-102 375.2 430 46.5
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 2.0e-101 373.6 444 47.3
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 2.0e-101 373.6 459 44.7
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 6.8e-97 358.6 290 61.0
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 6.8e-97 358.6 290 61.0
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 8.3e-95 351.7 425 44.5
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 8.5e-92 341.7 427 42.9
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 3.7e-87 326.2 431 41.1
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 4.9e-87 325.9 481 39.3
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.8e-86 323.9 430 41.4
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 9.1e-86 321.6 468 39.5
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 1.7e-79 300.8 203 74.4
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 2.2e-79 300.4 203 74.4
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 9.2e-78 295.0 419 40.3
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 2.5e-67 260.4 164 79.9
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 3.3e-59 233.4 333 38.7
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 6.8e-57 225.7 338 43.2
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 8.9e-57 225.3 212 53.3
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 8.6e-52 208.8 277 45.1
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 2.2e-47 194.1 203 52.2
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.2e-45 188.3 163 55.8
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 1.3e-42 178.3 201 47.3
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 9.3e-30 135.6 123 61.8
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 7.9e-29 132.5 128 50.8
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 3.7e-26 123.6 88 71.6
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 8.1e-26 122.5 337 29.1
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 2.0e-24 117.9 90 70.0
BcaC02g07346 Brassica carinata HOM05D003903 ORTHO05D095566 5.3e-17 93.2 63 77.8
BcaC02g07345 Brassica carinata HOM05D003903 ORTHO05D091390 5.9e-16 89.7 108 47.2
C05p20030 Brassica napus HOM05D003903 ORTHO05D004828 3.3e-11 73.9 47 76.6
VMungo0540G2232 Vigna mungo HOM05D003903 ORTHO05D004828 1.0e-07 62.4 148 30.4


User provided reference genes

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