Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G37590 Arabidopsis lyrata HOM05D003390 ORTHO05D080705 6.5e-44 180.3 86 100.0
AT1G29820 Arabidopsis thaliana HOM05D003390 ORTHO05D004189 7.7e-13 77.0 82 47.6
Carub.0001s2807 Capsella rubella HOM05D003390 ORTHO05D004189 1.0e-12 76.6 82 47.6
Sp1g25730 Schrenkiella parvula HOM05D003390 ORTHO05D004189 1.3e-12 76.3 82 46.3
Thhalv10007315m.g Eutrema salsugineum HOM05D003390 ORTHO05D004189 1.7e-12 75.9 82 46.3
AL1G43660 Arabidopsis lyrata HOM05D003390 ORTHO05D004189 2.9e-12 75.1 82 46.3
CARHR029610 Cardamine hirsuta HOM05D003390 ORTHO05D004189 3.8e-12 74.7 82 46.3
Aa31LG6G5840 Aethionema arabicum HOM05D003390 ORTHO05D004189 6.6e-12 73.9 82 46.3
BcaC01g00142 Brassica carinata HOM05D003390 ORTHO05D004189 1.1e-11 73.2 82 43.9
A08p24810 Brassica napus HOM05D003390 ORTHO05D004189 1.1e-11 73.2 82 43.9
C03p76240 Brassica napus HOM05D003390 ORTHO05D004189 1.1e-11 73.2 82 43.9
BolC3t19880H Brassica oleracea HOM05D003390 ORTHO05D004189 1.1e-11 73.2 82 43.9
BraA08t34436Z Brassica rapa HOM05D003390 ORTHO05D004189 1.1e-11 73.2 82 43.9
AT1G29830 Arabidopsis thaliana HOM05D003390 ORTHO05D004189 1.9e-11 72.4 82 43.9
THA.LOC104820634 Tarenaya hassleriana HOM05D003390 ORTHO05D004189 1.9e-11 72.4 82 42.7
BcaB03g12182 Brassica carinata HOM05D003390 ORTHO05D004189 4.2e-11 71.2 82 42.7
ATR1131G058 Amborella trichopoda HOM05D003390 ORTHO05D004189 5.2e-09 64.3 76 44.7
Cpa.g.sc17.128 Carica papaya HOM05D003390 ORTHO05D004189 6.8e-09 63.9 82 39.0
Peaxi162Scf00121g00231 Petunia axillaris HOM05D003390 ORTHO05D004189 6.8e-09 63.9 82 41.5
CANSAT35G0642 Cannabis sativa HOM05D003390 ORTHO05D004189 1.2e-08 63.2 82 42.7
CAN.G2018.1 Capsicum annuum HOM05D003390 ORTHO05D004189 1.2e-08 63.2 76 40.8
DCAR_005073 Daucus carota HOM05D003390 ORTHO05D004189 1.5e-08 62.8 77 39.0
PGR031G1555 Punica granatum HOM05D003390 ORTHO05D004189 2.0e-08 62.4 83 41.0
Rhsim06G0115300 Rhododendron simsii HOM05D003390 ORTHO05D004189 2.0e-08 62.4 82 39.0
Ca_06279_v3 Cicer arietinum L. HOM05D003390 ORTHO05D004189 2.6e-08 62.0 76 42.1
Ca_30614_v3 Cicer arietinum L. HOM05D003390 ORTHO05D004189 2.6e-08 62.0 76 42.1
HanXRQChr05g0147821 Helianthus annuus HOM05D003390 ORTHO05D004189 2.6e-08 62.0 76 39.5
Lj1A1183G65 Lonicera japonica HOM05D003390 ORTHO05D004189 2.6e-08 62.0 77 37.7
Lj6g0006873 Lotus japonicus HOM05D003390 ORTHO05D004189 2.6e-08 62.0 82 39.0
Lalb_Chr10g0106641 Lupinus albus HOM05D003390 ORTHO05D004189 2.6e-08 62.0 76 40.8
Ca_11357_v3 Cicer arietinum L. HOM05D003390 ORTHO05D004189 3.4e-08 61.6 82 39.0
Duzib192G0036 Durio zibethinus HOM05D003390 ORTHO05D004189 3.4e-08 61.6 76 40.8
Lsat_1_v5_gn_0_8061 Lactuca sativa HOM05D003390 ORTHO05D004189 3.4e-08 61.6 76 39.5
Nitab4.5_0000206g0100 Nicotiana tabacum HOM05D003390 ORTHO05D004189 3.4e-08 61.6 82 39.0
Nitab4.5_0001826g0010 Nicotiana tabacum HOM05D003390 ORTHO05D004189 3.4e-08 61.6 82 39.0
QL05p060163 Quercus lobata HOM05D003390 ORTHO05D004189 3.4e-08 61.6 82 37.8
Ciclev10014753m.g Citrus clementina HOM05D003390 ORTHO05D004189 4.4e-08 61.2 82 37.8
MBI07_g07829_MAGBIO Magnolia biondii HOM05D003390 ORTHO05D004189 4.4e-08 61.2 77 37.7
MBI07_g35048_MAGBIO Magnolia biondii HOM05D003390 ORTHO05D004189 4.4e-08 61.2 77 37.7
Sopen10g003650 Solanum pennellii HOM05D003390 ORTHO05D004189 4.4e-08 61.2 76 39.5
AUR62035789 Chenopodium quinoa HOM05D003390 ORTHO05D004189 5.7e-08 60.8 82 37.8
ECA232G3556 Erigeron canadensis HOM05D003390 ORTHO05D004189 5.7e-08 60.8 76 39.5
FvH4_6g38330 Fragaria vesca HOM05D003390 ORTHO05D004189 5.7e-08 60.8 76 40.8
MD10G1266700 Malus domestica HOM05D003390 ORTHO05D004189 5.7e-08 60.8 82 37.8
MD16G1203400 Malus domestica HOM05D003390 ORTHO05D004189 5.7e-08 60.8 82 37.8
Medtr2g028770 Medicago truncatula HOM05D003390 ORTHO05D004189 5.7e-08 60.8 82 39.0
Medtr5g091570 Medicago truncatula HOM05D003390 ORTHO05D004189 5.7e-08 60.8 76 40.8
TWI09G1133 Tripterygium wilfordii HOM05D003390 ORTHO05D004189 5.7e-08 60.8 77 39.0
vmacro12466 Vaccinium macrocarpon HOM05D003390 ORTHO05D004189 5.7e-08 60.8 82 39.0
Cfa000990 Carpinus fangiana HOM05D003390 ORTHO05D004189 7.5e-08 60.5 82 36.6
Eucgr.D00339 Eucalyptus grandis HOM05D003390 ORTHO05D004189 7.5e-08 60.5 76 39.5
Glyma.15G125900 Glycine max HOM05D003390 ORTHO05D004189 7.5e-08 60.5 82 37.8
HanXRQChr16g0525801 Helianthus annuus HOM05D003390 ORTHO05D004189 7.5e-08 60.5 71 40.8
LjContig00049g0028197 Lotus japonicus HOM05D003390 ORTHO05D004189 7.5e-08 60.5 76 40.8
Nitab4.5_0002209g0030 Nicotiana tabacum HOM05D003390 ORTHO05D004189 7.5e-08 60.5 76 40.8
Psat1g170120 Pisum sativum HOM05D003390 ORTHO05D004189 7.5e-08 60.5 81 38.3
PGSC0003DMG400021242 Solanum tuberosum HOM05D003390 ORTHO05D004189 7.5e-08 60.5 76 39.5
TAR386G0005 Trochodendron aralioides HOM05D003390 ORTHO05D004189 7.5e-08 60.5 76 40.8
TAR626G0692 Trochodendron aralioides HOM05D003390 ORTHO05D004189 7.5e-08 60.5 76 36.8
TAR627G0573 Trochodendron aralioides HOM05D003390 ORTHO05D004189 7.5e-08 60.5 76 40.8
AL4G41580 Arabidopsis lyrata HOM05D003390 ORTHO05D004189 9.8e-08 60.1 76 40.8
arahy.Tifrunner.gnm1.ann1.QBP2NG Arachis hypogaea HOM05D003390 ORTHO05D004189 9.8e-08 60.1 76 40.8
arahy.Tifrunner.gnm1.ann1.WT2YK3 Arachis hypogaea HOM05D003390 ORTHO05D004189 9.8e-08 60.1 76 40.8
EL10Ac8g19781 Beta vulgaris HOM05D003390 ORTHO05D004189 9.8e-08 60.1 82 37.8
Lsat_1_v5_gn_4_29721 Lactuca sativa HOM05D003390 ORTHO05D004189 9.8e-08 60.1 53 52.8
Nitab4.5_0003104g0070 Nicotiana tabacum HOM05D003390 ORTHO05D004189 9.8e-08 60.1 76 40.8
PGSC0003DMG400003171 Solanum tuberosum HOM05D003390 ORTHO05D004189 9.8e-08 60.1 82 40.2
TPR.G17499 Trifolium pratense HOM05D003390 ORTHO05D004189 9.8e-08 60.1 82 39.0
unitig_748.g7439 Utricularia gibba HOM05D003390 ORTHO05D004189 9.8e-08 60.1 82 39.0
Aqoxy1G01824 Aquilegia oxysepala HOM05D003390 ORTHO05D004189 1.3e-07 59.7 76 38.2
AUR62027570 Chenopodium quinoa HOM05D003390 ORTHO05D004189 1.3e-07 59.7 82 36.6
SalBow7G4851 Salvia bowleyana HOM05D003390 ORTHO05D004189 1.3e-07 59.7 76 38.2
Solyc10g007740.3 Solanum lycopersicum HOM05D003390 ORTHO05D004189 1.3e-07 59.7 76 39.5
Sopen02g005990 Solanum pennellii HOM05D003390 ORTHO05D004189 1.3e-07 59.7 82 39.0
Atru.chr10.1372 Acer truncatum HOM05D003390 ORTHO05D004189 1.7e-07 59.3 83 38.6
Actinidia39555 Actinidia chinensis HOM05D003390 ORTHO05D004189 1.7e-07 59.3 82 35.4
AT2G42950 Arabidopsis thaliana HOM05D003390 ORTHO05D004189 1.7e-07 59.3 76 40.8
MSTRG.7463 Avicennia marina HOM05D003390 ORTHO05D004189 1.7e-07 59.3 82 35.4
Carub.0004s2542 Capsella rubella HOM05D003390 ORTHO05D004189 1.7e-07 59.3 76 40.8
CiPaw.09G127300 Carya illinoinensis HOM05D003390 ORTHO05D004189 1.7e-07 59.3 82 36.6
CiPaw.09G127400 Carya illinoinensis HOM05D003390 ORTHO05D004189 1.7e-07 59.3 82 36.6
DCAR_013317 Daucus carota HOM05D003390 ORTHO05D004189 1.7e-07 59.3 76 39.5
Dinv30696 Davidia involucrata HOM05D003390 ORTHO05D004189 1.7e-07 59.3 77 36.4
Migut.M00950 Erythranthe guttata HOM05D003390 ORTHO05D004189 1.7e-07 59.3 82 36.6
FAN25G2602 Fragaria x ananassa HOM05D003390 ORTHO05D004189 1.7e-07 59.3 82 36.6
Gohir.A06G198200 Gossypium hirsutum HOM05D003390 ORTHO05D004189 1.7e-07 59.3 76 39.5
Gohir.D06G205600 Gossypium hirsutum HOM05D003390 ORTHO05D004189 1.7e-07 59.3 76 39.5
Gorai.010G239900 Gossypium raimondii HOM05D003390 ORTHO05D004189 1.7e-07 59.3 76 39.5
Lj2A310T45 Lonicera japonica HOM05D003390 ORTHO05D004189 1.7e-07 59.3 76 38.2
Lalb_Chr18g0057721 Lupinus albus HOM05D003390 ORTHO05D004189 1.7e-07 59.3 82 37.8
MD05G1290900 Malus domestica HOM05D003390 ORTHO05D004189 1.7e-07 59.3 82 36.6
Thecc.06G156600 Theobroma cacao HOM05D003390 ORTHO05D004189 1.7e-07 59.3 76 39.5
Migut.H02104 Erythranthe guttata HOM05D003390 ORTHO05D004189 2.2e-07 58.9 76 36.8
Glyma.02G285600 Glycine max HOM05D003390 ORTHO05D004189 2.2e-07 58.9 76 39.5
Peaxi162Scf00035g02617 Petunia axillaris HOM05D003390 ORTHO05D004189 2.2e-07 58.9 76 38.2
Prupe.4G074800 Prunus persica HOM05D003390 ORTHO05D004189 2.2e-07 58.9 82 36.6
TPR.G12521 Trifolium pratense HOM05D003390 ORTHO05D004189 2.2e-07 58.9 76 38.2
Ah.09g232910 Amaranthus hybridus HOM05D003390 ORTHO05D004189 3.7e-07 58.2 82 39.0
Eucgr.A01981 Eucalyptus grandis HOM05D003390 ORTHO05D004189 3.7e-07 58.2 76 36.8
FvH4_3g06290 Fragaria vesca HOM05D003390 ORTHO05D004189 3.7e-07 58.2 82 35.4
FAN11G2053 Fragaria x ananassa HOM05D003390 ORTHO05D004189 3.7e-07 58.2 82 35.4
FAN16G0009 Fragaria x ananassa HOM05D003390 ORTHO05D004189 3.7e-07 58.2 82 35.4
FAN21G1255 Fragaria x ananassa HOM05D003390 ORTHO05D004189 3.7e-07 58.2 82 35.4
Psat2g016080 Pisum sativum HOM05D003390 ORTHO05D004189 3.7e-07 58.2 76 38.2
Potri.001G353000 Populus trichocarpa HOM05D003390 ORTHO05D004189 3.7e-07 58.2 77 36.4
SalBow8G0013 Salvia bowleyana HOM05D003390 ORTHO05D002303 3.7e-07 58.2 82 36.6
SGA_v2.0_scaffold333G49014 Striga asiatica HOM05D003390 ORTHO05D004189 3.7e-07 58.2 82 35.4
VMungo0540G2227 Vigna mungo HOM05D003390 ORTHO05D004189 3.7e-07 58.2 82 36.6
Manes.17G065600 Manihot esculenta HOM05D003390 ORTHO05D004189 4.9e-07 57.8 82 36.6
Os01g0601000 Oryza sativa ssp. japonica HOM05D003390 ORTHO05D004189 4.9e-07 57.8 69 43.5
Phvul.006G132300 Phaseolus vulgaris HOM05D003390 ORTHO05D004189 4.9e-07 57.8 82 36.6
QL08p044424 Quercus lobata HOM05D003390 ORTHO05D004189 4.9e-07 57.8 76 38.2
Sed0005552 Sechium edule HOM05D003390 ORTHO05D004189 4.9e-07 57.8 82 36.6
SGA_v2.0_scaffold4G02117 Striga asiatica HOM05D003390 ORTHO05D004189 4.9e-07 57.8 76 38.2
Cc05_g09550 Coffea canephora HOM05D003390 ORTHO05D004189 6.3e-07 57.4 76 38.2
MD17G1138500 Malus domestica HOM05D003390 ORTHO05D004189 6.3e-07 57.4 76 36.8
Sabra16G0232300 Salix brachista HOM05D003390 ORTHO05D004189 6.3e-07 57.4 82 37.8
ECA234G1186 Erigeron canadensis HOM05D003390 ORTHO05D004189 8.3e-07 57.0 77 36.4
PGR042G1945 Punica granatum HOM05D003390 ORTHO05D004189 1.1e-06 56.6 76 38.2
HPP92_008031 Vanilla planifolia HOM05D003390 ORTHO05D004189 1.1e-06 56.6 76 39.5
Oeu020929.2 Olea europaea HOM05D003390 ORTHO05D004189 1.4e-06 56.2 76 36.8
SEGI_06697 Sequoiadendron giganteum HOM05D003390 ORTHO05D004189 1.4e-06 56.2 76 39.5
Sc05g0006540 Simmondsia chinensis HOM05D003390 ORTHO05D004189 1.4e-06 56.2 82 34.1
Ciclev10031790m.g Citrus clementina HOM05D003390 ORTHO05D004189 1.8e-06 55.8 76 36.8
Cc09_g09610 Coffea canephora HOM05D003390 ORTHO05D004189 1.8e-06 55.8 82 35.4
Mapoly0130s0010 Marchantia polymorpha HOM05D003390 ORTHO05D004189 1.8e-06 55.8 76 39.5
Pp3c9_16960 Physcomitrium patens HOM05D003390 ORTHO05D004189 1.8e-06 55.8 78 37.2
Rhsim12G0071900 Rhododendron simsii HOM05D003390 ORTHO05D004189 1.8e-06 55.8 77 36.4
Sp4g25080 Schrenkiella parvula HOM05D003390 ORTHO05D004189 1.8e-06 55.8 76 38.2
vmacro15692 Vaccinium macrocarpon HOM05D000244 ORTHO05D000179 1.8e-06 55.8 53 49.1
Zm00001eb359660 Zea mays HOM05D003390 ORTHO05D004189 1.8e-06 55.8 76 38.2
MELO3C002711.2 Cucumis melo HOM05D003390 ORTHO05D004189 2.4e-06 55.5 82 35.4
CsaV3_1G032710 Cucumis sativus L. HOM05D003390 ORTHO05D004189 2.4e-06 55.5 82 35.4
Os01g0664100 Oryza sativa ssp. japonica HOM05D003390 ORTHO05D004189 2.4e-06 55.5 76 38.2
PSO135G0210 Papaver somniferum HOM05D003390 ORTHO05D004189 2.4e-06 55.5 76 36.8
Prupe.3G173900 Prunus persica HOM05D003390 ORTHO05D004189 2.4e-06 55.5 76 36.8
RcHm_v2.0_Chr5g0013021 Rosa chinensis HOM05D003390 ORTHO05D004189 3.1e-06 55.1 82 34.1
BcaB06g29273 Brassica carinata HOM05D003390 ORTHO05D004189 4.1e-06 54.7 76 36.8
BcaC02g07214 Brassica carinata HOM05D003390 ORTHO05D004189 4.1e-06 54.7 76 36.8
BNapus_Darmor_BZH_scaffold_64p00180 Brassica napus HOM05D003390 ORTHO05D004189 4.1e-06 54.7 76 36.8
BolC4t28499H Brassica oleracea HOM05D003390 ORTHO05D004189 4.1e-06 54.7 76 36.8
BraA04t18699Z Brassica rapa HOM05D003390 ORTHO05D004189 4.1e-06 54.7 76 36.8
CARHR138010 Cardamine hirsuta HOM05D003390 ORTHO05D004189 4.1e-06 54.7 76 36.8
Thhalv10016539m.g Eutrema salsugineum HOM05D003390 ORTHO05D004189 4.1e-06 54.7 76 36.8
Gohir.A09G007100 Gossypium hirsutum HOM05D003390 ORTHO05D004189 4.1e-06 54.7 76 36.8
Gohir.D09G006300 Gossypium hirsutum HOM05D003390 ORTHO05D004189 4.1e-06 54.7 76 36.8
Gorai.006G007900 Gossypium raimondii HOM05D003390 ORTHO05D004189 4.1e-06 54.7 76 36.8
Aa31LG1G24700 Aethionema arabicum HOM05D003390 ORTHO05D004189 5.4e-06 54.3 76 36.8
Thecc.01G163000 Theobroma cacao HOM05D003390 ORTHO05D004189 5.4e-06 54.3 76 36.8
COL.COLO4_08451 Corchorus olitorius HOM05D003390 ORTHO05D004189 7.0e-06 53.9 76 36.8
TPR.G17505 Trifolium pratense HOM05D003390 ORTHO05D004189 7.0e-06 53.9 69 39.1
arahy.Tifrunner.gnm1.ann1.0JHG5Q Arachis hypogaea HOM05D003390 ORTHO05D004189 9.2e-06 53.5 82 35.4
arahy.Tifrunner.gnm1.ann1.VAF4MI Arachis hypogaea HOM05D003390 ORTHO05D004189 9.2e-06 53.5 82 35.4
Nn4g26479 Nelumbo nucifera HOM05D003390 ORTHO05D004189 9.2e-06 53.5 76 35.5


User provided reference genes

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