Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G36990 Arabidopsis lyrata HOM05D006083 ORTHO05D007634 0.0e+00 3011.9 1534 100.0
AT2G39580 Arabidopsis thaliana HOM05D006083 ORTHO05D007634 0.0e+00 2658.6 1602 87.0
Carub.0004s2165 Capsella rubella HOM05D006083 ORTHO05D007634 0.0e+00 2531.9 1606 82.1
CARHR134450 Cardamine hirsuta HOM05D006083 ORTHO05D007634 0.0e+00 2387.8 1616 77.7
Thhalv10016135m.g Eutrema salsugineum HOM05D006083 ORTHO05D007634 0.0e+00 2328.9 1621 76.1
Sp4g21870 Schrenkiella parvula HOM05D006083 ORTHO05D007634 0.0e+00 2282.7 1621 74.5
C04p67440 Brassica napus HOM05D006083 ORTHO05D007634 0.0e+00 2099.7 1635 70.5
BolC4t28242H Brassica oleracea HOM05D006083 ORTHO05D007634 0.0e+00 2099.7 1633 70.5
BraA04t18470Z Brassica rapa HOM05D006083 ORTHO05D007634 0.0e+00 2043.5 1621 69.0
A04p30380 Brassica napus HOM05D006083 ORTHO05D007634 0.0e+00 2022.7 1635 68.5
Aa31LG5G20040 Aethionema arabicum HOM05D006083 ORTHO05D007634 0.0e+00 1950.6 1620 66.2
THA.LOC104810174 Tarenaya hassleriana HOM05D006083 ORTHO05D007634 0.0e+00 1598.2 1646 56.2
BcaB06g29099 Brassica carinata HOM05D006083 ORTHO05D007634 0.0e+00 1195.3 1102 63.0
Thecc.10G046700 Theobroma cacao HOM05D006083 ORTHO05D007634 9.2e-274 948.0 1742 39.1
Cfa001507 Carpinus fangiana HOM05D006083 ORTHO05D007634 1.5e-271 940.6 1661 39.1
QL08p059019 Quercus lobata HOM05D006083 ORTHO05D007634 3.1e-269 932.9 1742 38.5
Haze_17036 Corylus avellana HOM05D006083 ORTHO05D007634 1.1e-266 924.5 1768 37.7
Atru.chr12.505 Acer truncatum HOM05D006083 ORTHO05D007634 1.9e-263 913.7 1576 39.8
COL.COLO4_14970 Corchorus olitorius HOM05D006083 ORTHO05D007634 1.3e-259 901.0 1725 38.0
Manes.07G113300 Manihot esculenta HOM05D006083 ORTHO05D007634 2.9e-259 899.8 1675 38.7
Potri.008G052500 Populus trichocarpa HOM05D006083 ORTHO05D007634 7.1e-258 895.2 1703 38.3
Gohir.A05G349900 Gossypium hirsutum HOM05D006083 ORTHO05D007634 7.8e-257 891.7 1739 37.9
Prupe.2G231200 Prunus persica HOM05D006083 ORTHO05D007634 3.6e-254 882.9 1726 37.3
Gohir.D04G062600 Gossypium hirsutum HOM05D006083 ORTHO05D007634 6.2e-254 882.1 1716 37.9
Gorai.012G069900 Gossypium raimondii HOM05D006083 ORTHO05D007634 8.9e-253 878.2 1730 37.9
Duzib114G0803 Durio zibethinus HOM05D006083 ORTHO05D007634 2.2e-251 873.6 1326 42.3
Sabra08G0037800 Salix brachista HOM05D006083 ORTHO05D007634 2.4e-250 870.2 1642 38.7
Potri.010G208200 Populus trichocarpa HOM05D006083 ORTHO05D007634 2.3e-248 863.6 1714 37.5
TWI15G0674 Tripterygium wilfordii HOM05D006083 ORTHO05D007634 3.9e-248 862.8 1711 38.0
CiPaw.01G284100 Carya illinoinensis HOM05D006083 ORTHO05D007634 1.9e-242 844.0 1756 36.8
FAN06G0387 Fragaria x ananassa HOM05D006083 ORTHO05D007634 3.6e-238 829.7 1745 36.2
Ciclev10030497m.g Citrus clementina HOM05D006083 ORTHO05D007634 1.1e-237 828.2 1606 37.9
FAN03G2083 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.8e-237 827.4 1759 36.3
FAN06G5109 Fragaria x ananassa HOM05D006083 ORTHO05D007634 2.4e-237 827.0 1763 36.1
Glyma.18G288300 Glycine max HOM05D006083 ORTHO05D007634 2.6e-236 823.5 1674 36.2
FAN01G1089 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.1e-234 818.1 1762 35.8
MD07G1193600 Malus domestica HOM05D006083 ORTHO05D007634 1.1e-234 818.1 1817 35.1
FvH4_7g21930 Fragaria vesca HOM05D006083 ORTHO05D007634 4.2e-234 816.2 1745 35.9
CANSAT56G1432 Cannabis sativa HOM05D006083 ORTHO05D007634 4.6e-233 812.8 1638 37.1
MELO3C025449.2 Cucumis melo HOM05D006083 ORTHO05D007634 6.0e-233 812.4 1762 36.0
ClCG09G020050 Citrullus lanatus HOM05D006083 ORTHO05D007634 4.8e-230 802.7 1756 35.5
CsaV3_5G026410 Cucumis sativus L. HOM05D006083 ORTHO05D007634 2.6e-228 797.0 1749 35.1
Dinv31433 Davidia involucrata HOM05D006083 ORTHO05D007634 6.4e-227 792.3 1741 35.4
VMungo1383G1537 Vigna mungo HOM05D006083 ORTHO05D007634 8.4e-227 792.0 1690 35.6
CSS0008531 Camellia sinensis var. sinensis HOM05D006083 ORTHO05D007634 1.3e-224 784.6 1747 34.7
GSVIVG01016589001 Vitis vinifera HOM05D006083 ORTHO05D007634 6.2e-222 775.8 1704 35.4
Eucgr.G02918 Eucalyptus grandis HOM05D006083 ORTHO05D007634 1.4e-221 774.6 1693 34.9
arahy.Tifrunner.gnm1.ann1.ES2X5Y Arachis hypogaea HOM05D006083 ORTHO05D007634 2.4e-221 773.9 1630 35.5
arahy.Tifrunner.gnm1.ann1.V7LDKI Arachis hypogaea HOM05D006083 ORTHO05D007634 2.4e-221 773.9 1630 35.5
Actinidia02966 Actinidia chinensis HOM05D006083 ORTHO05D007634 1.2e-220 771.5 1753 34.6
Lj1g0008101 Lotus japonicus HOM05D006083 ORTHO05D007634 2.0e-220 770.8 1686 35.3
PGR142G3850 Punica granatum HOM05D006083 ORTHO05D007634 2.6e-212 743.8 1688 34.1
Sc06g0002680 Simmondsia chinensis HOM05D006083 ORTHO05D007634 6.5e-211 739.2 1248 40.1
Nn2g12936 Nelumbo nucifera HOM05D006083 ORTHO05D007634 6.1e-209 732.6 1804 33.8
Psat3g185080 Pisum sativum HOM05D006083 ORTHO05D007634 6.1e-209 732.6 1707 34.3
Medtr7g024000 Medicago truncatula HOM05D006083 ORTHO05D007634 6.7e-208 729.2 1689 34.9
Rhsim03G0132700 Rhododendron simsii HOM05D006083 ORTHO05D007634 4.3e-207 726.5 1786 33.8
Sed0020975 Sechium edule HOM05D006083 ORTHO05D007634 9.0e-205 718.8 1750 33.9
Lalb_Chr10g0091771 Lupinus albus HOM05D006083 ORTHO05D007634 1.9e-202 711.1 1245 38.3
Ca_07227_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 4.2e-202 709.9 1684 34.5
Hund12547 Selenicereus undatus HOM05D006083 ORTHO05D007634 2.5e-199 700.7 1750 33.5
Lj1A934T60 Lonicera japonica HOM05D006083 ORTHO05D007634 1.4e-197 694.9 1361 36.3
Lalb_Chr04g0257841 Lupinus albus HOM05D006083 ORTHO05D007634 1.3e-195 688.3 1250 37.6
Peaxi162Scf00060g00026 Petunia axillaris HOM05D006083 ORTHO05D007634 9.4e-194 682.2 1590 33.9
Sopen04g005570 Solanum pennellii HOM05D006083 ORTHO05D007634 3.6e-193 680.2 1759 33.3
TPR.G15506 Trifolium pratense HOM05D006083 ORTHO05D007634 3.0e-192 677.2 1278 37.0
Solyc04g011380.4 Solanum lycopersicum HOM05D006083 ORTHO05D007634 3.3e-191 673.7 1753 32.7
EL10Ac2g03425 Beta vulgaris HOM05D006083 ORTHO05D007634 4.4e-191 673.3 1692 32.3
CAN.G786.23 Capsicum annuum HOM05D006083 ORTHO05D007634 3.8e-187 660.2 1745 32.8
AUR62040954 Chenopodium quinoa HOM05D006083 ORTHO05D007634 3.8e-187 660.2 1646 33.3
Cc02_g08180 Coffea canephora HOM05D006083 ORTHO05D007634 1.8e-184 651.4 1634 32.7
Aqoxy4G02985 Aquilegia oxysepala HOM05D006083 ORTHO05D007634 2.0e-183 647.9 1726 31.7
AUR62038373 Chenopodium quinoa HOM05D006083 ORTHO05D007634 1.4e-181 641.7 1589 33.9
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 1.5e-178 631.7 1643 33.2
DCAR_027665 Daucus carota HOM05D006083 ORTHO05D007634 6.1e-177 626.3 1824 29.4
CANSAT56G0880 Cannabis sativa HOM05D006083 ORTHO05D007634 1.0e-176 625.5 810 44.9
Lsat_1_v5_gn_9_65161 Lactuca sativa HOM05D006083 ORTHO05D007634 1.4e-173 615.1 1575 33.5
vmacro07157 Vaccinium macrocarpon HOM05D006083 ORTHO05D007634 5.4e-173 613.2 2070 30.0
TAR623G0128 Trochodendron aralioides HOM05D006083 ORTHO05D007634 7.0e-173 612.8 1645 32.6
Oeu040905.3 Olea europaea HOM05D006083 ORTHO05D007634 9.1e-173 612.5 1203 35.7
Cpa.g.sc1.374 Carica papaya HOM05D006083 ORTHO05D007634 1.3e-171 608.6 669 50.5
HanXRQChr09g0247731 Helianthus annuus HOM05D006083 ORTHO05D007634 2.5e-170 604.4 1676 31.0
Phvul.008G013732 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 1.0e-168 599.0 828 41.8
MBI14_g18543_MAGBIO Magnolia biondii HOM05D006083 ORTHO05D007634 1.2e-167 595.5 1310 34.1
PSO384G3245 Papaver somniferum HOM05D006083 ORTHO05D007634 9.1e-165 585.9 1686 31.4
PSO339G3664 Papaver somniferum HOM05D006083 ORTHO05D007634 3.5e-164 583.9 1698 30.8
FAN10G0925 Fragaria x ananassa HOM05D006083 ORTHO05D007634 2.8e-153 547.7 1481 32.6
SHI22592 Sapria himalayana HOM05D006083 ORTHO05D007634 1.7e-150 538.5 1704 30.7
RcHm_v2.0_Chr1g0366211 Rosa chinensis HOM05D006083 ORTHO05D007634 2.2e-150 538.1 638 46.9
TAR369G0895 Trochodendron aralioides HOM05D006083 ORTHO05D007634 1.5e-146 525.4 655 48.7
Ca_29789_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 2.1e-145 521.5 773 41.3
Nitab4.5_0005525g0010 Nicotiana tabacum HOM05D006083 ORTHO05D007634 9.9e-135 486.1 1731 29.2
Zm00001eb028750 Zea mays HOM05D006083 ORTHO05D007634 3.9e-131 474.2 1272 31.0
ATR0559G184 Amborella trichopoda HOM05D006083 ORTHO05D007634 3.3e-130 471.1 1300 29.8
CDE05G2458 Ceratophyllum demersum HOM05D006083 ORTHO05D007634 6.2e-121 440.3 1595 29.0
Nitab4.5_0003969g0020 Nicotiana tabacum HOM05D006083 ORTHO05D007634 2.4e-109 401.7 1344 30.1
SEGI_22945 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 8.4e-94 350.1 910 29.2
FAN10G2882 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.0e-91 343.2 414 46.4
Cpa.g.sc1.375 Carica papaya HOM05D006083 ORTHO05D007634 2.2e-78 298.9 526 39.9
HPP92_018996 Vanilla planifolia HOM05D006083 ORTHO05D007634 1.1e-74 286.6 629 31.8
RcHm_v2.0_Chr1g0366201 Rosa chinensis HOM05D006083 ORTHO05D007634 3.3e-74 285.0 1084 29.8
Peaxi162Scf00060g00126 Petunia axillaris HOM05D006083 ORTHO05D007634 3.6e-68 265.0 441 37.9
Mapoly0075s0039 Marchantia polymorpha HOM05D006083 ORTHO05D007634 4.8e-65 254.6 914 27.6
Os12g0566500 Oryza sativa ssp. japonica HOM05D006083 ORTHO05D007634 1.0e-59 236.9 455 32.5
SEGI_25206 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 7.5e-58 230.7 538 30.5
Pp3c6_12750 Physcomitrium patens HOM05D006083 ORTHO05D007634 3.7e-49 201.8 826 24.1
AagrBONN_evm.TU.Sc2ySwM_228.2795 Anthoceros agrestis HOM05D000140 ORTHO05D007634 4.5e-47 194.9 889 26.0
Phvul.008G013666 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 9.8e-42 177.2 615 31.7
SMO367G1201 Selaginella moellendorffii HOM05D006083 ORTHO05D007634 2.7e-39 169.1 1287 23.9
TAR369G0795 Trochodendron aralioides HOM05D006083 ORTHO05D007634 5.6e-37 161.4 841 27.6
Ca_07226_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 5.4e-24 118.2 131 48.1
Actinidia07719 Actinidia chinensis HOM05D001446 ORTHO05D001360 4.3e-21 108.6 654 21.6
Hund24433 Selenicereus undatus HOM05D006083 ORTHO05D007634 1.1e-19 104.0 735 26.1
AL7G29000 Arabidopsis lyrata HOM05D006083 ORTHO05D011291 4.9e-17 95.1 126 43.7
HPP92_018997 Vanilla planifolia HOM05D006083 ORTHO05D007634 1.2e-12 80.5 443 27.5
Cpa.g.sc1.376 Carica papaya HOM05D006083 ORTHO05D007634 6.9e-11 74.7 322 28.6
Lsat_1_v5_gn_7_4020 Lactuca sativa HOM05D006083 ORTHO05D007634 7.6e-10 71.2 59 62.7
Lalb_Chr04g0257831 Lupinus albus HOM05D006083 ORTHO05D007634 7.6e-10 71.2 287 30.7
TPR.G40211 Trifolium pratense HOM05D006083 ORTHO05D007634 2.2e-09 69.7 344 30.5
Lalb_Chr10g0091761 Lupinus albus HOM05D006083 ORTHO05D007634 4.9e-09 68.6 324 27.2
Sc06g0002670 Simmondsia chinensis HOM05D006083 ORTHO05D007634 3.2e-08 65.9 277 26.7
AagrBONN_evm.TU.Sc2ySwM_228.2798 Anthoceros agrestis HOM05D006083 ORTHO05D007634 6.0e-07 61.6 338 24.9
ATR0618G162 Amborella trichopoda HOM05D006083 ORTHO05D007634 3.0e-06 59.3 93 38.7


User provided reference genes

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