Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G36810 Arabidopsis lyrata HOM05D006750 ORTHO05D008426 3.5e-88 328.2 158 100.0
AT2G39440 Arabidopsis thaliana HOM05D006750 ORTHO05D008426 1.3e-79 299.7 153 92.2
Carub.0004s2150 Capsella rubella HOM05D006750 ORTHO05D008426 2.8e-77 292.0 153 89.5
Thhalv10017350m.g Eutrema salsugineum HOM05D006750 ORTHO05D008426 5.3e-76 287.7 153 89.5
CARHR134300 Cardamine hirsuta HOM05D006750 ORTHO05D008426 1.2e-75 286.6 153 87.6
Sp4g21740 Schrenkiella parvula HOM05D006750 ORTHO05D008426 1.2e-72 276.6 153 85.6
BolC4t22432H Brassica oleracea HOM05D006750 ORTHO05D008426 1.5e-70 269.6 154 83.8
BcaC02g12068 Brassica carinata HOM05D006750 ORTHO05D008426 1.3e-69 266.5 154 83.1
BcaB02g09122 Brassica carinata HOM05D006750 ORTHO05D008426 1.7e-69 266.2 152 81.6
BcaC02g11618 Brassica carinata HOM05D006750 ORTHO05D008426 8.2e-69 263.8 154 81.8
C04p08300 Brassica napus HOM05D006750 ORTHO05D008426 8.2e-69 263.8 154 81.8
C04p13120 Brassica napus HOM05D006750 ORTHO05D008426 8.2e-69 263.8 154 81.8
A05p06970 Brassica napus HOM05D006750 ORTHO05D008426 2.4e-68 262.3 154 81.2
BraA05t19661Z Brassica rapa HOM05D006750 ORTHO05D008426 2.4e-68 262.3 154 81.2
Sp4g08180 Schrenkiella parvula HOM05D006750 ORTHO05D008426 7.7e-67 257.3 159 78.0
THA.LOC104824253 Tarenaya hassleriana HOM05D006750 ORTHO05D008426 2.0e-59 232.6 154 70.1
Atru.chr12.2220 Acer truncatum HOM05D006750 ORTHO05D008426 1.3e-50 203.4 154 60.4
TWI63G0081 Tripterygium wilfordii HOM05D006750 ORTHO05D008426 2.9e-50 202.2 144 62.5
Thecc.06G141200 Theobroma cacao HOM05D006750 ORTHO05D008426 5.0e-50 201.4 153 62.7
Ciclev10016972m.g Citrus clementina HOM05D006750 ORTHO05D008426 1.1e-49 200.3 154 61.7
Cc09_g06280 Coffea canephora HOM05D006750 ORTHO05D008426 2.5e-49 199.1 151 59.6
Thecc.06G140200 Theobroma cacao HOM05D006750 ORTHO05D008426 2.5e-49 199.1 153 62.1
MELO3C021769.2 Cucumis melo HOM05D006750 ORTHO05D008426 9.4e-49 197.2 137 63.5
Sed0026407 Sechium edule HOM05D006750 ORTHO05D008426 2.1e-48 196.1 147 62.6
CANSAT21G0613 Cannabis sativa HOM05D006750 ORTHO05D008426 4.7e-48 194.9 143 63.6
CsaV3_1G046580 Cucumis sativus L. HOM05D006750 ORTHO05D008426 6.1e-48 194.5 137 62.8
RhsimUnG0232200 Rhododendron simsii HOM05D006750 ORTHO05D008426 6.1e-48 194.5 151 58.3
Gohir.D05G369200 Gossypium hirsutum HOM05D006750 ORTHO05D008426 8.0e-48 194.1 155 62.6
CAN.G1222.19 Capsicum annuum HOM05D006750 ORTHO05D008426 1.0e-47 193.7 152 59.2
Gorai.009G437900 Gossypium raimondii HOM05D006750 ORTHO05D008426 1.8e-47 193.0 151 63.6
Potri.012G120100 Populus trichocarpa HOM05D006750 ORTHO05D008426 4.0e-47 191.8 153 57.5
FvH4_3g12150 Fragaria vesca HOM05D006750 ORTHO05D008426 5.2e-47 191.4 158 56.3
Gohir.A04G017000 Gossypium hirsutum HOM05D006750 ORTHO05D008426 5.2e-47 191.4 155 61.9
Potri.012G120220 Populus trichocarpa HOM05D006750 ORTHO05D008426 5.2e-47 191.4 153 57.5
vmacro03507 Vaccinium macrocarpon HOM05D006750 ORTHO05D008426 5.2e-47 191.4 136 64.0
Nitab4.5_0003773g0080 Nicotiana tabacum HOM05D006750 ORTHO05D008426 6.8e-47 191.0 152 58.6
Solyc02g069070.3 Solanum lycopersicum HOM05D006750 ORTHO05D008426 6.8e-47 191.0 152 57.9
CSS0027015 Camellia sinensis var. sinensis HOM05D006750 ORTHO05D008426 8.8e-47 190.7 152 55.9
ClCG01G009300 Citrullus lanatus HOM05D006750 ORTHO05D008426 1.2e-46 190.3 151 57.6
FAN16G3293 Fragaria x ananassa HOM05D006750 ORTHO05D008426 2.0e-46 189.5 159 54.7
FAN25G1681 Fragaria x ananassa HOM05D006750 ORTHO05D008426 2.6e-46 189.1 158 55.7
TAR627G0115 Trochodendron aralioides HOM05D006750 ORTHO05D008426 2.6e-46 189.1 157 58.0
Nn7g38126 Nelumbo nucifera HOM05D006750 ORTHO05D008426 4.4e-46 188.3 154 55.8
Duzib235G0570 Durio zibethinus HOM05D006750 ORTHO05D008426 7.5e-46 187.6 145 63.4
Lj1A1143T38 Lonicera japonica HOM05D006750 ORTHO05D008426 7.5e-46 187.6 142 63.4
Prupe.4G110300 Prunus persica HOM05D006750 ORTHO05D008426 9.8e-46 187.2 158 53.8
Nitab4.5_0002056g0050 Nicotiana tabacum HOM05D006750 ORTHO05D008426 1.7e-45 186.4 152 57.2
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 2.8e-45 185.7 107 83.2
Actinidia22388 Actinidia chinensis HOM05D006750 ORTHO05D008426 6.3e-45 184.5 168 53.6
DCAR_004323 Daucus carota HOM05D006750 ORTHO05D008426 1.1e-44 183.7 143 59.4
HanXRQChr07g0189661 Helianthus annuus HOM05D006750 ORTHO05D008426 1.1e-44 183.7 149 56.4
Sabra15G0136900 Salix brachista HOM05D006750 ORTHO05D008426 1.8e-44 183.0 152 57.2
MD10G1234600 Malus domestica HOM05D006750 ORTHO05D008426 3.1e-44 182.2 144 56.9
Lsat_1_v5_gn_5_36321 Lactuca sativa HOM05D006750 ORTHO05D008426 4.1e-44 181.8 158 54.4
RcHm_v2.0_Chr5g0019891 Rosa chinensis HOM05D006750 ORTHO05D008426 4.1e-44 181.8 153 56.2
Hma1.2p1_0040F.1_g025070 Hydrangea macrophylla HOM05D006750 ORTHO05D008426 9.1e-44 180.6 129 59.7
SGA_v2.0_scaffold298G47680 Striga asiatica HOM05D006750 ORTHO05D008426 1.2e-43 180.3 149 55.0
CiPaw.10G065100 Carya illinoinensis HOM05D006750 ORTHO05D008426 3.5e-43 178.7 147 54.4
MD05G1254400 Malus domestica HOM05D006750 ORTHO05D008426 3.5e-43 178.7 144 56.9
Dinv11873 Davidia involucrata HOM05D006750 ORTHO05D008426 5.9e-43 177.9 141 57.4
Haze_06024 Corylus avellana HOM05D006750 ORTHO05D008426 1.3e-42 176.8 141 58.2
CSS0019703 Camellia sinensis var. sinensis HOM05D006750 ORTHO05D008426 2.2e-42 176.0 143 54.5
Haze_06026 Corylus avellana HOM05D006750 ORTHO05D008426 3.8e-42 175.3 141 57.4
Manes.11G104340 Manihot esculenta HOM05D006750 ORTHO05D008426 6.5e-42 174.5 139 54.0
Migut.M01971 Erythranthe guttata HOM05D006750 ORTHO05D008426 8.5e-42 174.1 149 51.0
Aqoxy1G01469 Aquilegia oxysepala HOM05D006750 ORTHO05D008426 1.1e-41 173.7 152 52.0
GSVIVG01012094001 Vitis vinifera HOM05D006750 ORTHO05D008426 1.1e-41 173.7 150 51.3
ECA246G4127 Erigeron canadensis HOM05D006750 ORTHO05D008426 1.9e-41 172.9 131 57.3
SalBow8G0594 Salvia bowleyana HOM05D006750 ORTHO05D008426 1.9e-41 172.9 136 55.1
SalBow8G2736 Salvia bowleyana HOM05D006750 ORTHO05D008426 1.9e-41 172.9 136 55.1
Eucgr.D01041 Eucalyptus grandis HOM05D006750 ORTHO05D008426 2.5e-41 172.6 152 53.9
PGR142G2582 Punica granatum HOM05D006750 ORTHO05D008426 5.5e-41 171.4 149 53.7
PSO675G8070 Papaver somniferum HOM05D006750 ORTHO05D008426 1.2e-40 170.2 143 53.8
PSO541G1844 Papaver somniferum HOM05D006750 ORTHO05D008426 1.6e-40 169.9 143 53.1
Oeu052673.2 Olea europaea HOM05D006750 ORTHO05D008426 6.1e-40 167.9 140 55.0
CARHR087370 Cardamine hirsuta HOM05D006750 ORTHO05D008426 8.0e-40 167.5 92 85.9
MSTRG.22268 Avicennia marina HOM05D006750 ORTHO05D008426 4.0e-39 165.2 141 52.5
unitig_748.g7497 Utricularia gibba HOM05D006750 ORTHO05D008426 4.0e-39 165.2 149 51.0
QL11p018076 Quercus lobata HOM05D006750 ORTHO05D008426 8.8e-39 164.1 153 53.6
Lj4g0008374 Lotus japonicus HOM05D006750 ORTHO05D008426 1.2e-38 163.7 137 54.0
CDE06G2778 Ceratophyllum demersum HOM05D006750 ORTHO05D008426 9.8e-38 160.6 130 56.2
Phvul.003G153500 Phaseolus vulgaris HOM05D006750 ORTHO05D008426 3.7e-37 158.7 149 48.3
EL10Ac2g02809 Beta vulgaris HOM05D006750 ORTHO05D008426 4.9e-37 158.3 158 48.7
VMungo1215G0360 Vigna mungo HOM05D006750 ORTHO05D008426 1.4e-36 156.8 153 48.4
AUR62007362 Chenopodium quinoa HOM05D006750 ORTHO05D008426 1.8e-36 156.4 139 52.5
HPP92_004186 Vanilla planifolia HOM05D006750 ORTHO05D008426 1.8e-36 156.4 151 48.3
Psat0s3953g0080 Pisum sativum HOM05D006750 ORTHO05D008426 5.4e-36 154.8 151 47.7
Ca_21154_v3 Cicer arietinum L. HOM05D006750 ORTHO05D008426 7.0e-36 154.5 150 50.0
Glyma.02G206800 Glycine max HOM05D006750 ORTHO05D008426 1.2e-35 153.7 152 48.7
COL.COLO4_30981 Corchorus olitorius HOM05D006750 ORTHO05D008426 1.6e-35 153.3 107 68.2
TPR.G24866 Trifolium pratense HOM05D006750 ORTHO05D008426 2.0e-35 152.9 150 48.0
AUR62018626 Chenopodium quinoa HOM05D006750 ORTHO05D008426 1.0e-34 150.6 139 52.5
Sc05g0005750 Simmondsia chinensis HOM05D006750 ORTHO05D008426 2.1e-32 142.9 118 54.2
arahy.Tifrunner.gnm1.ann1.RPZE8L Arachis hypogaea HOM05D006750 ORTHO05D008426 4.7e-32 141.7 137 44.5
Lalb_Chr02g0152091 Lupinus albus HOM05D006750 ORTHO05D008426 4.7e-32 141.7 143 48.3
arahy.Tifrunner.gnm1.ann1.8322W6 Arachis hypogaea HOM05D006750 ORTHO05D008426 6.1e-32 141.4 137 44.5
Ah.12g055560 Amaranthus hybridus HOM05D002269 ORTHO05D002421 8.0e-32 141.0 162 43.8
Os02g0168900 Oryza sativa ssp. japonica HOM05D006750 ORTHO05D008426 1.4e-31 140.2 144 48.6
Cfa000723 Carpinus fangiana HOM05D006750 ORTHO05D008426 2.2e-29 132.9 142 49.3
Hma1.2p1_0040F.1_g025080 Hydrangea macrophylla HOM05D006750 ORTHO05D008426 6.4e-29 131.3 95 60.0
ATR0763G132 Amborella trichopoda HOM05D006750 ORTHO05D008426 4.1e-28 128.6 139 45.3
Peaxi162Scf00149g00921 Petunia axillaris HOM05D006750 ORTHO05D008426 1.6e-27 126.7 152 45.4
CBR_g39953 Chara braunii HOM05D006750 ORTHO05D008426 1.1e-25 120.6 164 39.6
SHI31544 Sapria himalayana HOM05D006750 ORTHO05D008426 3.6e-24 115.5 203 32.5
SMO367G1186 Selaginella moellendorffii HOM05D006750 ORTHO05D008426 4.0e-23 112.1 131 39.7
Pp3c2_9480 Physcomitrium patens HOM05D006750 ORTHO05D008426 6.8e-23 111.3 131 41.2
Mapoly0007s0049 Marchantia polymorpha HOM05D006750 ORTHO05D008426 5.8e-22 108.2 140 38.6
Cpa.g.sc135.32 Carica papaya HOM05D006750 ORTHO05D008426 3.5e-19 99.0 74 56.8
Hund11170 Selenicereus undatus HOM05D006750 ORTHO05D008426 6.6e-18 94.7 76 57.9
Sopen02g018170 Solanum pennellii HOM05D006750 ORTHO05D008426 2.3e-15 86.3 62 62.9
Cre08.g378100 Chlamydomonas reinhardtii HOM05D006750 ORTHO05D008426 1.9e-12 76.6 133 32.3
Zm00001eb233030 Zea mays HOM05D006750 ORTHO05D008426 3.2e-12 75.9 144 31.2
AagrBONN_evm.TU.Sc2ySwM_344.3424 Anthoceros agrestis HOM05D006750 ORTHO05D008426 7.8e-11 71.2 104 36.5
Hund11169 Selenicereus undatus HOM05D006750 ORTHO05D008426 1.5e-09 67.0 88 40.9
TPR.G24917 Trifolium pratense HOM05D006750 ORTHO05D008426 1.2e-06 57.4 75 41.3
Cfa010446 Carpinus fangiana HOM05D006750 ORTHO05D008426 1.5e-06 57.0 42 57.1
PRCOL_00005799 Prasinoderma coloniale HOM05D006750 ORTHO05D008426 2.0e-06 56.6 128 30.5
Zm00001eb233050 Zea mays HOM05D006750 ORTHO05D008426 2.0e-06 56.6 126 34.9


User provided reference genes

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