Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G36390 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 5.5e-298 1026.9 548 100.0
AT2G39090 Arabidopsis thaliana HOM05D005803 ORTHO05D008090 9.8e-287 989.6 559 95.3
Carub.0004s2114 Capsella rubella HOM05D005803 ORTHO05D008090 1.2e-284 982.6 559 94.8
Sp4g21440 Schrenkiella parvula HOM05D005803 ORTHO05D008090 1.7e-278 962.2 559 92.3
BcaB02g09144 Brassica carinata HOM05D005803 ORTHO05D008090 2.7e-276 954.9 559 91.1
A05p07190 Brassica napus HOM05D005803 ORTHO05D008090 1.7e-275 952.2 560 91.1
BraA05t19684Z Brassica rapa HOM05D005803 ORTHO05D008090 1.7e-275 952.2 560 91.1
CARHR133850 Cardamine hirsuta HOM05D005803 ORTHO05D008090 1.1e-272 943.0 560 90.7
BcaC02g12039 Brassica carinata HOM05D005803 ORTHO05D008090 9.9e-271 936.4 559 89.4
C04p08600 Brassica napus HOM05D005803 ORTHO05D008090 2.4e-269 931.8 560 89.3
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 7.1e-269 930.2 559 89.3
Thhalv10017916m.g Eutrema salsugineum HOM05D005803 ORTHO05D008090 1.5e-266 922.5 530 91.7
THA.LOC104820247 Tarenaya hassleriana HOM05D005803 ORTHO05D008090 5.6e-266 920.6 559 85.9
Aa31LG5G20510 Aethionema arabicum HOM05D005803 ORTHO05D008090 2.6e-255 885.2 574 83.1
Ciclev10004654m.g Citrus clementina HOM05D005803 ORTHO05D008090 5.1e-227 791.2 562 73.7
Thecc.04G279700 Theobroma cacao HOM05D005803 ORTHO05D008090 6.7e-227 790.8 562 74.2
Sabra08G0155700 Salix brachista HOM05D005803 ORTHO05D008090 4.8e-225 784.6 561 73.8
Cfa015360 Carpinus fangiana HOM05D005803 ORTHO05D008090 8.2e-225 783.9 561 73.8
Manes.15G015300 Manihot esculenta HOM05D005803 ORTHO05D008090 8.2e-225 783.9 561 75.2
Gorai.011G187600 Gossypium raimondii HOM05D005803 ORTHO05D008090 1.4e-224 783.1 562 75.4
TWI09G0274 Tripterygium wilfordii HOM05D005803 ORTHO05D008090 2.4e-224 782.3 563 74.1
Gohir.A10G161600 Gossypium hirsutum HOM05D005803 ORTHO05D008090 3.1e-224 781.9 562 73.8
Potri.008G215100 Populus trichocarpa HOM05D005803 ORTHO05D008090 6.9e-224 780.8 561 73.6
Duzib151G0664 Durio zibethinus HOM05D005803 ORTHO05D008090 5.0e-222 774.6 555 75.7
Potri.010G022100 Populus trichocarpa HOM05D005803 ORTHO05D008090 8.5e-222 773.9 561 73.3
GSVIVG01017783001 Vitis vinifera HOM05D005803 ORTHO05D008090 1.4e-221 773.1 562 73.1
Haze_01246 Corylus avellana HOM05D005803 ORTHO05D008090 3.9e-219 765.0 600 69.2
PGR031G1735 Punica granatum HOM05D005803 ORTHO05D008090 3.9e-219 765.0 562 72.4
QL06p007721 Quercus lobata HOM05D005803 ORTHO05D008090 2.0e-218 762.7 560 72.1
Hma1.2p1_0698F.1_g205430 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 2.5e-218 762.3 562 71.9
CsaV3_6G017350 Cucumis sativus L. HOM05D005803 ORTHO05D008090 4.8e-217 758.1 561 70.9
Lj6g0003207 Lotus japonicus HOM05D005803 ORTHO05D008090 5.3e-216 754.6 561 70.9
Prupe.1G140200 Prunus persica HOM05D005803 ORTHO05D008090 7.7e-215 750.7 561 71.7
Psat1g187960 Pisum sativum HOM05D005803 ORTHO05D008090 1.3e-214 750.0 561 71.3
Cpa.g.sc1214.2 Carica papaya HOM05D005803 ORTHO05D008090 1.7e-214 749.6 560 72.5
CSS0017376 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 2.2e-214 749.2 562 70.3
CSS0035312 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 2.2e-214 749.2 562 70.3
Glyma.13G216500 Glycine max HOM05D005803 ORTHO05D008090 5.0e-214 748.0 561 71.8
Glyma.15G096000 Glycine max HOM05D005803 ORTHO05D008090 8.5e-214 747.3 561 72.2
MD16G1173300 Malus domestica HOM05D005803 ORTHO05D008090 1.1e-213 746.9 562 71.2
CAN.G223.20 Capsicum annuum HOM05D005803 ORTHO05D008090 1.9e-213 746.1 562 71.9
Nn3g21354 Nelumbo nucifera HOM05D005803 ORTHO05D008090 1.9e-213 746.1 551 71.5
Gohir.D10G168100 Gossypium hirsutum HOM05D005803 ORTHO05D008090 4.2e-213 745.0 562 73.3
VMungo0540G0998 Vigna mungo HOM05D005803 ORTHO05D008090 1.2e-212 743.4 561 71.8
Sed0014775 Sechium edule HOM05D005803 ORTHO05D008090 1.0e-211 740.3 561 71.3
RcHm_v2.0_Chr4g0421441 Rosa chinensis HOM05D005803 ORTHO05D008090 1.4e-211 740.0 561 70.9
CiPaw.01G151500 Carya illinoinensis HOM05D005803 ORTHO05D008090 1.8e-211 739.6 561 70.4
Sopen01g029400 Solanum pennellii HOM05D005803 ORTHO05D008090 1.8e-211 739.6 562 69.4
Dinv44408 Davidia involucrata HOM05D005803 ORTHO05D008090 1.1e-210 736.9 562 71.0
Peaxi162Scf00386g00615 Petunia axillaris HOM05D005803 ORTHO05D008090 1.5e-210 736.5 562 70.6
EL10Ac3g06553 Beta vulgaris HOM05D005803 ORTHO05D008090 3.3e-210 735.3 551 69.5
Phvul.006G162900 Phaseolus vulgaris HOM05D005803 ORTHO05D008090 3.3e-210 735.3 561 70.2
CANSAT78G2259 Cannabis sativa HOM05D005803 ORTHO05D008090 1.1e-208 730.3 559 70.1
Ca_00559_v3 Cicer arietinum L. HOM05D005803 ORTHO05D008090 1.1e-208 730.3 561 69.7
ClCG06G005310 Citrullus lanatus HOM05D005803 ORTHO05D008090 1.4e-208 729.9 626 64.4
Sc19g0005000 Simmondsia chinensis HOM05D005803 ORTHO05D008090 1.8e-208 729.6 562 69.8
MD13G1171800 Malus domestica HOM05D005803 ORTHO05D008090 5.3e-208 728.0 562 69.8
Eucgr.B01277 Eucalyptus grandis HOM05D005803 ORTHO05D008090 2.0e-207 726.1 562 70.1
Atru.chr4.2785 Acer truncatum HOM05D005803 ORTHO05D008090 2.2e-206 722.6 515 73.6
Lalb_Chr18g0055621 Lupinus albus HOM05D005803 ORTHO05D008090 6.5e-206 721.1 561 68.8
DCAR_027096 Daucus carota HOM05D005803 ORTHO05D008090 1.1e-205 720.3 576 69.4
FAN07G1352 Fragaria x ananassa HOM05D005803 ORTHO05D008090 2.5e-205 719.2 565 70.6
Actinidia40241 Actinidia chinensis HOM05D005803 ORTHO05D008090 1.2e-204 716.8 558 69.0
FAN12G0977 Fragaria x ananassa HOM05D005803 ORTHO05D008090 2.1e-204 716.1 557 70.9
TAR365G0996 Trochodendron aralioides HOM05D005803 ORTHO05D008090 3.0e-203 712.2 562 70.5
FAN12G3070 Fragaria x ananassa HOM05D005803 ORTHO05D008090 5.2e-203 711.4 560 70.7
Lsat_1_v5_gn_5_69681 Lactuca sativa HOM05D005803 ORTHO05D008090 2.4e-200 702.6 562 69.0
Cc03_g02160 Coffea canephora HOM05D005803 ORTHO05D008090 1.2e-199 700.3 560 67.5
arahy.Tifrunner.gnm1.ann1.7QB25Q Arachis hypogaea HOM05D005803 ORTHO05D008090 2.0e-199 699.5 561 66.7
arahy.Tifrunner.gnm1.ann1.FSUI8I Arachis hypogaea HOM05D005803 ORTHO05D008090 2.0e-199 699.5 561 66.7
HanXRQChr13g0410111 Helianthus annuus HOM05D005803 ORTHO05D008090 2.9e-198 695.7 562 68.1
FAN22G2255 Fragaria x ananassa HOM05D005803 ORTHO05D008090 1.8e-195 686.4 542 70.8
Rhsim04G0218200 Rhododendron simsii HOM05D005803 ORTHO05D008090 4.0e-195 685.3 613 63.3
COL.COLO4_13910 Corchorus olitorius HOM05D005803 ORTHO05D008090 4.4e-194 681.8 501 72.3
MSTRG.3937 Avicennia marina HOM05D005803 ORTHO05D008090 1.3e-193 680.2 565 65.3
Aqoxy5G00678 Aquilegia oxysepala HOM05D005803 ORTHO05D008090 2.2e-193 679.5 555 65.8
FvH4_4g17530 Fragaria vesca HOM05D005803 ORTHO05D008090 2.2e-193 679.5 513 71.0
Ah.13g074480 Amaranthus hybridus HOM05D005803 ORTHO05D008090 8.3e-193 677.6 544 66.9
Nitab4.5_0000644g0090 Nicotiana tabacum HOM05D005803 ORTHO05D008090 3.1e-192 675.6 576 64.9
Medtr2g019850 Medicago truncatula HOM05D005803 ORTHO05D008090 1.6e-191 673.3 561 65.8
Migut.G00189 Erythranthe guttata HOM05D005803 ORTHO05D008090 2.7e-191 672.5 566 65.4
HPP92_015179 Vanilla planifolia HOM05D005803 ORTHO05D008090 6.5e-190 667.9 564 64.7
Lj6C671G13 Lonicera japonica HOM05D005803 ORTHO05D008090 3.2e-189 665.6 504 71.0
PSO832G0201 Papaver somniferum HOM05D005803 ORTHO05D008090 3.4e-186 655.6 562 63.9
ATR0706G085 Amborella trichopoda HOM05D005803 ORTHO05D008090 2.2e-185 652.9 562 60.9
PSO210G1989 Papaver somniferum HOM05D005803 ORTHO05D008090 2.7e-183 646.0 562 63.3
MELO3C021349.2 Cucumis melo HOM05D005803 ORTHO05D008090 3.3e-181 639.0 583 61.4
MBI19_g01944_MAGBIO Magnolia biondii HOM05D005803 ORTHO05D008090 1.8e-179 633.3 533 65.9
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 3.0e-179 632.5 521 70.6
SGA_v2.0_scaffold57G20231 Striga asiatica HOM05D005803 ORTHO05D008090 1.1e-173 614.0 470 68.3
vmacro22476 Vaccinium macrocarpon HOM05D005803 ORTHO05D008090 3.6e-172 609.0 595 59.7
Hma1.2p1_0698F.1_g205440 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 3.4e-170 602.4 393 77.9
unitig_26.g9058 Utricularia gibba HOM05D005803 ORTHO05D008090 5.2e-163 578.6 455 67.0
Os05g0149900 Oryza sativa ssp. japonica HOM05D005803 ORTHO05D008090 2.7e-159 566.2 433 67.9
Pp3c23_6980 Physcomitrium patens HOM05D005803 ORTHO05D008090 3.0e-158 562.8 562 55.2
Mapoly0073s0077 Marchantia polymorpha HOM05D005803 ORTHO05D008090 4.3e-157 558.9 563 55.1
AagrBONN_evm.TU.Sc2ySwM_228.1968 Anthoceros agrestis HOM05D005803 ORTHO05D008090 7.3e-149 531.6 565 52.0
SMO119G0467 Selaginella moellendorffii HOM05D005803 ORTHO05D008090 7.3e-149 531.6 569 51.7
AUR62042651 Chenopodium quinoa HOM05D005803 ORTHO05D008090 1.2e-148 530.8 540 55.7
CBR_g37168 Chara braunii HOM05D005803 ORTHO05D000048 1.9e-141 506.9 568 49.8
Nitab4.5_0000829g0230 Nicotiana tabacum HOM05D005803 ORTHO05D008090 3.2e-136 489.6 339 75.8
AUR62043505 Chenopodium quinoa HOM05D005803 ORTHO05D008090 3.6e-132 476.1 382 65.7
TPR.G1478 Trifolium pratense HOM05D005803 ORTHO05D008090 1.9e-128 463.8 306 80.7
CDE06G0920 Ceratophyllum demersum HOM05D005803 ORTHO05D008090 1.1e-123 448.0 349 68.5
Zm00001eb418180 Zea mays HOM05D005803 ORTHO05D008090 5.0e-97 359.4 356 53.7
ECA240G2219 Erigeron canadensis HOM05D005803 ORTHO05D008090 4.8e-92 342.8 341 57.2
TPR.G35525 Trifolium pratense HOM05D005803 ORTHO05D008090 1.1e-75 288.5 260 58.5
MCO16G459 Micromonas commoda HOM05D005803 ORTHO05D008090 1.0e-73 282.0 543 35.9
Oeu029260.1 Olea europaea HOM05D005803 ORTHO05D008090 4.9e-68 263.1 208 68.3
ECA240G4135 Erigeron canadensis HOM05D005803 ORTHO05D008090 5.2e-62 243.0 198 68.7
Oeu032270.1 Olea europaea HOM05D005803 ORTHO05D008090 5.0e-57 226.5 144 75.7
AL92U10050 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 4.7e-55 219.9 119 99.2
SEGI_31260 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 6.2e-55 219.5 183 59.6
Hma1.2p1_2251F.1_g318140 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 5.4e-51 206.5 130 79.2
Solyc01g067490.4 Solanum lycopersicum HOM05D005803 ORTHO05D008090 2.7e-50 204.1 198 58.1
BcaC07g41552 Brassica carinata HOM05D000238 ORTHO05D020090 4.3e-40 170.2 180 58.3
BcaC09g48072 Brassica carinata HOM05D005803 ORTHO05D020090 1.4e-38 165.2 178 57.3
C06p17250 Brassica napus HOM05D005803 ORTHO05D020090 1.5e-37 161.8 160 60.0
BolC6t36924H Brassica oleracea HOM05D005803 ORTHO05D020090 1.5e-37 161.8 160 60.0
TPR.G29244 Trifolium pratense HOM05D005803 ORTHO05D008090 1.4e-35 155.2 153 58.2
C04p44010 Brassica napus HOM05D005803 ORTHO05D020090 1.5e-32 145.2 168 56.0
Hma1.2p1_0055F.1_g031500 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.7e-28 131.7 85 78.8
TPR.G29241 Trifolium pratense HOM05D005803 ORTHO05D008090 3.2e-27 127.5 90 64.4
BcaC08g44302 Brassica carinata HOM05D005803 ORTHO05D020090 2.1e-23 114.8 58 96.6
SEGI_25333 Sequoiadendron giganteum HOM05D005803 ORTHO05D020090 6.2e-23 113.2 77 68.8
Atru.chr4.2782 Acer truncatum HOM05D005803 ORTHO05D008090 1.5e-16 92.0 87 62.1
Hma1.2p1_1012F.1_g247600 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 2.5e-16 91.3 85 60.0
Hma1.2p1_2251F.1_g318130 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 9.9e-13 79.3 118 44.1
SEGI_04834 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 6.7e-09 66.6 48 62.5
SEGI_29512 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 1.9e-08 65.1 74 47.3


User provided reference genes

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