Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G36300 Arabidopsis lyrata HOM05D002510 ORTHO05D006928 1.4e-162 576.2 286 100.0
AT2G39000 Arabidopsis thaliana HOM05D002510 ORTHO05D006928 1.5e-153 546.2 279 96.8
Carub.0004s2104 Capsella rubella HOM05D002510 ORTHO05D006928 4.5e-142 508.1 284 89.1
Sp4g21360 Schrenkiella parvula HOM05D002510 ORTHO05D006928 1.0e-138 496.9 285 87.7
Thhalv10017009m.g Eutrema salsugineum HOM05D002510 ORTHO05D006928 8.8e-138 493.8 286 88.1
CARHR133780 Cardamine hirsuta HOM05D002510 ORTHO05D006928 1.3e-136 490.0 293 85.7
BcaC02g12914 Brassica carinata HOM05D002510 ORTHO05D006928 9.2e-127 457.2 284 81.3
C04p67010 Brassica napus HOM05D002510 ORTHO05D006928 1.0e-125 453.8 284 81.0
BolC4t28203H Brassica oleracea HOM05D002510 ORTHO05D006928 1.3e-125 453.4 285 80.7
BraA04t18437Z Brassica rapa HOM05D002510 ORTHO05D006928 1.2e-123 446.8 285 78.9
A04p29730 Brassica napus HOM05D002510 ORTHO05D006928 4.9e-120 434.9 308 73.4
THA.LOC104827063 Tarenaya hassleriana HOM05D002510 ORTHO05D006928 5.6e-116 421.4 288 76.4
Duzib114G0372 Durio zibethinus HOM05D002510 ORTHO05D006928 5.6e-108 394.8 280 71.8
Thecc.10G074800 Theobroma cacao HOM05D002510 ORTHO05D006928 5.6e-108 394.8 279 72.8
Gohir.A10G205600 Gossypium hirsutum HOM05D002510 ORTHO05D006928 3.6e-107 392.1 230 80.0
CiPaw.01G272400 Carya illinoinensis HOM05D002510 ORTHO05D006928 1.8e-106 389.8 283 70.0
Manes.07G100200 Manihot esculenta HOM05D002510 ORTHO05D006928 1.8e-106 389.8 285 69.8
QL08p055746 Quercus lobata HOM05D002510 ORTHO05D006928 6.8e-106 387.9 289 70.2
Prupe.2G213200 Prunus persica HOM05D002510 ORTHO05D006928 8.9e-106 387.5 296 66.6
FAN10G3768 Fragaria x ananassa HOM05D002510 ORTHO05D007210 1.5e-105 386.7 286 69.9
arahy.Tifrunner.gnm1.ann1.D0MVTX Arachis hypogaea HOM05D002510 ORTHO05D006928 2.6e-105 386.0 281 69.4
Dinv31320 Davidia involucrata HOM05D002510 ORTHO05D006928 2.6e-105 386.0 277 71.1
FAN01G2940 Fragaria x ananassa HOM05D002510 ORTHO05D007210 2.6e-105 386.0 284 70.1
RcHm_v2.0_Chr1g0363321 Rosa chinensis HOM05D002510 ORTHO05D006928 3.4e-105 385.6 284 70.4
FvH4_7g19440 Fragaria vesca HOM05D002510 ORTHO05D006928 4.4e-105 385.2 286 70.3
Duzib128G0305 Durio zibethinus HOM05D002510 ORTHO05D006928 5.8e-105 384.8 231 79.7
Glyma.10G210800 Glycine max HOM05D002510 ORTHO05D006928 7.5e-105 384.4 281 68.7
FAN10G0968 Fragaria x ananassa HOM05D002510 ORTHO05D007210 9.8e-105 384.0 290 69.3
Glyma.20G179800 Glycine max HOM05D002510 ORTHO05D006928 1.3e-104 383.6 281 69.4
Psat6g183480 Pisum sativum HOM05D002510 ORTHO05D006928 1.7e-104 383.3 283 68.9
GSVIVG01016268001 Vitis vinifera HOM05D002510 ORTHO05D006928 1.7e-104 383.3 277 70.0
FAN03G1741 Fragaria x ananassa HOM05D002510 ORTHO05D006928 2.2e-104 382.9 286 69.6
arahy.Tifrunner.gnm1.ann1.B5KM0B Arachis hypogaea HOM05D002510 ORTHO05D006928 2.9e-104 382.5 283 69.6
Lj5g0027397 Lotus japonicus HOM05D002510 ORTHO05D006928 3.7e-104 382.1 279 68.5
FAN06G0282 Fragaria x ananassa HOM05D002510 ORTHO05D006928 4.9e-104 381.7 286 69.6
Potri.008G039300 Populus trichocarpa HOM05D002510 ORTHO05D006928 4.9e-104 381.7 281 69.8
DCAR_019102 Daucus carota HOM05D002510 ORTHO05D006928 8.3e-104 380.9 249 72.3
Gorai.011G239300 Gossypium raimondii HOM05D002510 ORTHO05D006928 8.3e-104 380.9 239 77.0
Haze_16887 Corylus avellana HOM05D002510 ORTHO05D006928 1.1e-103 380.6 284 68.7
Lalb_Chr02g0142201 Lupinus albus HOM05D002510 ORTHO05D006928 1.1e-103 380.6 282 68.4
Sabra08G0027000 Salix brachista HOM05D002510 ORTHO05D006928 1.1e-103 380.6 222 81.1
MD01G1108300 Malus domestica HOM05D002510 ORTHO05D006928 1.4e-103 380.2 293 65.5
Eucgr.G02836 Eucalyptus grandis HOM05D002510 ORTHO05D006928 1.9e-103 379.8 277 70.0
MD07G1174400 Malus domestica HOM05D002510 ORTHO05D006928 2.4e-103 379.4 299 63.9
Medtr1g095000 Medicago truncatula HOM05D002510 ORTHO05D006928 2.4e-103 379.4 287 66.6
Hund12054 Selenicereus undatus HOM05D002510 ORTHO05D006928 2.4e-103 379.4 242 73.1
Phvul.007G094800 Phaseolus vulgaris HOM05D002510 ORTHO05D006928 4.1e-103 378.6 281 66.9
Lj1C913T4 Lonicera japonica HOM05D002510 ORTHO05D006928 5.4e-103 378.3 280 67.1
Ca_10569_v3 Cicer arietinum L. HOM05D002800 ORTHO05D008563 2.7e-102 375.9 279 68.5
Gohir.D10G213800 Gossypium hirsutum HOM05D002510 ORTHO05D006928 4.6e-102 375.2 228 78.5
Atru.chr12.758 Acer truncatum HOM05D002510 ORTHO05D006928 1.0e-101 374.0 277 68.6
MELO3C019798.2 Cucumis melo HOM05D002510 ORTHO05D006928 2.3e-101 372.9 250 71.6
CsaV3_6G036450 Cucumis sativus L. HOM05D002510 ORTHO05D006928 2.3e-101 372.9 250 71.6
PGR142G1169 Punica granatum HOM05D002510 ORTHO05D006928 3.9e-101 372.1 285 66.3
TWI15G0405 Tripterygium wilfordii HOM05D002510 ORTHO05D006928 6.6e-101 371.3 280 67.1
HanXRQChr14g0456861 Helianthus annuus HOM05D002510 ORTHO05D006928 8.6e-101 370.9 249 71.9
Potri.010G222900 Populus trichocarpa HOM05D002510 ORTHO05D006928 1.5e-100 370.2 279 67.7
CSS0017911 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 3.3e-100 369.0 220 79.5
ClCG08G007520 Citrullus lanatus HOM05D002510 ORTHO05D006928 4.3e-100 368.6 270 66.7
Lalb_Chr06g0162351 Lupinus albus HOM05D002510 ORTHO05D006928 4.3e-100 368.6 220 79.5
Cc02_g11320 Coffea canephora HOM05D002510 ORTHO05D006928 1.6e-99 366.7 224 76.3
TAR369G0428 Trochodendron aralioides HOM05D002510 ORTHO05D006928 2.1e-99 366.3 279 66.3
Sc20g0001820 Simmondsia chinensis HOM05D002510 ORTHO05D006928 4.7e-99 365.2 224 76.8
Oeu031347.1 Olea europaea HOM05D002510 ORTHO05D006928 8.1e-99 364.4 277 66.4
Ciclev10032329m.g Citrus clementina HOM05D002510 ORTHO05D006928 1.1e-98 364.0 278 64.7
Sed0007153 Sechium edule HOM05D002510 ORTHO05D006928 1.1e-98 364.0 238 72.7
Lsat_1_v5_gn_2_112320 Lactuca sativa HOM05D002510 ORTHO05D006928 1.4e-98 363.6 229 74.7
Actinidia06769 Actinidia chinensis HOM05D002510 ORTHO05D006928 5.2e-98 361.7 221 78.7
Nn2g10810 Nelumbo nucifera HOM05D002510 ORTHO05D006928 8.9e-98 360.9 222 76.1
Ah.10g032650 Amaranthus hybridus HOM05D002510 ORTHO05D006928 2.0e-97 359.8 220 76.8
EL10Ac3g05855 Beta vulgaris HOM05D002510 ORTHO05D006928 2.6e-97 359.4 279 64.5
AUR62037755 Chenopodium quinoa HOM05D002510 ORTHO05D006928 1.3e-96 357.1 235 72.3
PGSC0003DMG400033889 Solanum tuberosum HOM05D002510 ORTHO05D006928 8.4e-96 354.4 223 73.5
CAN.G131.8 Capsicum annuum HOM05D002510 ORTHO05D006928 1.4e-95 353.6 223 72.6
MSTRG.9172 Avicennia marina HOM05D002510 ORTHO05D006928 3.2e-95 352.4 263 68.4
Nitab4.5_0002524g0010 Nicotiana tabacum HOM05D002510 ORTHO05D006928 9.2e-95 350.9 281 63.3
AUR62018249 Chenopodium quinoa HOM05D002510 ORTHO05D006928 1.2e-94 350.5 289 63.0
Sabra10G0172300 Salix brachista HOM05D002510 ORTHO05D006928 1.6e-94 350.1 229 73.4
Nitab4.5_0001053g0060 Nicotiana tabacum HOM05D002510 ORTHO05D006928 1.0e-93 347.4 280 62.1
Migut.F01984 Erythranthe guttata HOM05D002510 ORTHO05D006928 3.0e-93 345.9 222 72.5
TAR623G0044 Trochodendron aralioides HOM05D002510 ORTHO05D006928 5.1e-93 345.1 284 63.7
Actinidia38854 Actinidia chinensis HOM05D002510 ORTHO05D006928 1.1e-92 344.0 279 63.4
PSO063G7611 Papaver somniferum HOM05D002510 ORTHO05D006928 1.5e-92 343.6 277 61.7
Glyma.02G074000 Glycine max HOM05D002510 ORTHO05D006928 7.3e-92 341.3 229 72.9
PSO339G5277 Papaver somniferum HOM05D002510 ORTHO05D006928 1.2e-91 340.5 277 62.1
CSS0041581 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 1.6e-91 340.1 280 60.7
CSS0006577 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D006928 2.8e-91 339.3 280 60.4
Aqoxy1G01228 Aquilegia oxysepala HOM05D002510 ORTHO05D006928 6.2e-91 338.2 242 66.5
Phvul.004G083200 Phaseolus vulgaris HOM05D002510 ORTHO05D006928 7.6e-89 331.3 234 68.8
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 2.9e-88 329.3 260 65.4
VMungo1197G0001 Vigna mungo HOM05D002510 ORTHO05D006928 6.4e-88 328.2 286 60.1
Lj3g0006441 Lotus japonicus HOM05D002510 ORTHO05D006928 1.4e-87 327.0 222 70.7
Rhsim03G0120400 Rhododendron simsii HOM05D002510 ORTHO05D006928 2.4e-87 326.2 221 71.5
HPP92_014717 Vanilla planifolia HOM05D002510 ORTHO05D006928 2.3e-85 319.7 218 67.4
vmacro04869 Vaccinium macrocarpon HOM05D002510 ORTHO05D006928 2.5e-84 316.2 220 68.2
SGA_v2.0_scaffold62G21410 Striga asiatica HOM05D002510 ORTHO05D006928 5.6e-84 315.1 251 63.7
ECA238G3090 Erigeron canadensis HOM05D002510 ORTHO05D006928 1.3e-83 313.9 226 66.8
Lalb_Chr03g0035921 Lupinus albus HOM05D002510 ORTHO05D006928 1.6e-83 313.5 286 59.1
Migut.F01753 Erythranthe guttata HOM05D002510 ORTHO05D006928 2.8e-83 312.8 224 67.0
CDE04G1444 Ceratophyllum demersum HOM05D002510 ORTHO05D006928 1.2e-81 307.4 223 64.6
Cpa.g.sc53.85 Carica papaya HOM05D002510 ORTHO05D006928 7.6e-81 304.7 172 83.1
Os02g0806000 Oryza sativa ssp. japonica HOM05D002510 ORTHO05D006928 2.2e-80 303.1 241 58.9
VMungo0464G1224 Vigna mungo HOM05D002510 ORTHO05D006928 1.9e-79 300.1 233 63.9
ATR0048G011 Amborella trichopoda HOM05D002510 ORTHO05D006928 3.2e-79 299.3 228 59.6
arahy.Tifrunner.gnm1.ann1.DB5KD4 Arachis hypogaea HOM05D002510 ORTHO05D006928 7.1e-79 298.1 258 59.7
arahy.Tifrunner.gnm1.ann1.L5PTYD Arachis hypogaea HOM05D002510 ORTHO05D006928 2.7e-78 296.2 258 59.3
Lj3g0019343 Lotus japonicus HOM05D002510 ORTHO05D006928 5.1e-77 292.0 234 62.8
SalBow4G2249 Salvia bowleyana HOM05D002510 ORTHO05D006928 5.1e-77 292.0 229 61.1
Gohir.D10G213900 Gossypium hirsutum HOM05D002510 ORTHO05D006928 4.8e-75 285.4 170 78.8
Dinv36437 Davidia involucrata HOM05D002510 ORTHO05D006928 9.0e-74 281.2 234 65.8
Atru.chr12.782 Acer truncatum HOM05D002510 ORTHO05D006928 5.8e-73 278.5 172 77.9
Gohir.A10G205500 Gossypium hirsutum HOM05D002510 ORTHO05D006928 4.9e-72 275.4 167 79.0
Peaxi162Scf01719g00013 Petunia axillaris HOM05D002510 ORTHO05D006928 1.9e-71 273.5 240 56.2
unitig_88.g27817 Utricularia gibba HOM05D002510 ORTHO05D006928 4.2e-71 272.3 277 53.8
SEGI_15474 Sequoiadendron giganteum HOM05D002510 ORTHO05D006928 1.6e-70 270.4 219 58.4
Aa31LG5G20680 Aethionema arabicum HOM05D002510 ORTHO05D006928 1.5e-68 263.8 188 74.5
SalBow3G0053 Salvia bowleyana HOM05D002510 ORTHO05D006928 1.1e-66 257.7 163 74.8
Oeu014386.1 Olea europaea HOM05D002510 ORTHO05D006928 8.7e-61 238.0 161 70.2
CDE06G2540 Ceratophyllum demersum HOM05D002510 ORTHO05D006928 4.2e-55 219.2 175 60.6
CAN.G790.5 Capsicum annuum HOM05D002510 ORTHO05D006928 5.1e-53 212.2 135 70.4
vmacro07070 Vaccinium macrocarpon HOM05D002510 ORTHO05D006928 1.3e-51 207.6 197 58.4
Mapoly0033s0159 Marchantia polymorpha HOM05D002510 ORTHO05D006928 1.7e-48 197.2 207 45.9
Sopen04g011630 Solanum pennellii HOM05D002510 ORTHO05D006928 6.1e-46 188.7 134 65.7
Solyc04g025240.2 Solanum lycopersicum HOM05D002510 ORTHO05D006928 1.5e-44 184.1 134 64.2
Zm00001eb172140 Zea mays HOM05D002510 ORTHO05D006928 9.7e-44 181.4 157 58.0
Glyma.16G155400 Glycine max HOM05D002510 ORTHO05D006928 2.8e-43 179.9 172 56.4
SMO134G0014 Selaginella moellendorffii HOM05D002510 ORTHO05D006928 2.4e-42 176.8 205 44.9
Lj2g0015916 Lotus japonicus HOM05D002510 ORTHO05D006928 2.9e-40 169.9 193 53.4
Solyc04g025230.1 Solanum lycopersicum HOM05D002510 ORTHO05D006928 3.0e-29 133.3 90 68.9
Haze_18780 Corylus avellana HOM05D000278 ORTHO05D005754 2.6e-28 130.2 131 55.0
Ciclev10024578m.g Citrus clementina HOM05D002510 ORTHO05D006928 2.5e-23 113.6 90 60.0
Nn3g20716 Nelumbo nucifera HOM05D002510 ORTHO05D006928 1.4e-21 107.8 148 46.6
AagrBONN_evm.TU.Sc2ySwM_117.96 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.5e-20 104.4 127 46.5
Actinidia32448 Actinidia chinensis HOM05D002510 ORTHO05D006928 5.9e-17 92.4 82 57.3
Cre16.g662650 Chlamydomonas reinhardtii HOM05D002510 ORTHO05D006928 2.5e-15 87.0 124 37.9
A03p21800 Brassica napus HOM05D002510 ORTHO05D006928 6.8e-13 79.0 39 87.2
PRCOL_00005349 Prasinoderma coloniale HOM05D002510 ORTHO05D006928 1.6e-09 67.8 77 48.1
Actinidia37356 Actinidia chinensis HOM05D002510 ORTHO05D006928 5.9e-09 65.9 67 52.2
AagrBONN_evm.TU.Sc2ySwM_117.2238 Anthoceros agrestis HOM05D004023 ORTHO05D004681 5.6e-07 59.3 63 44.4
MCO13G231 Micromonas commoda HOM05D005733 ORTHO05D006928 2.8e-06 57.0 84 33.3


User provided reference genes

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