Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G36180 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 6.8e-69 263.8 131 100.0
AL4G42200 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 1.3e-56 223.0 119 94.1
AT2G43465 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 6.8e-45 184.1 119 78.2
Carub.0004s2592 Capsella rubella HOM05D001295 ORTHO05D005319 5.8e-36 154.5 124 67.7
Thhalv10001762m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 3.3e-31 138.7 119 63.9
A05p03770 Brassica napus HOM05D001295 ORTHO05D005319 2.4e-29 132.5 119 59.7
Sp4g25550 Schrenkiella parvula HOM05D001295 ORTHO05D005319 2.4e-29 132.5 119 63.0
BraA05t19365Z Brassica rapa HOM05D001295 ORTHO05D005319 3.1e-29 132.1 120 60.8
CARHR138550 Cardamine hirsuta HOM05D001295 ORTHO05D005319 4.0e-29 131.7 123 63.4
BcaC02g12392 Brassica carinata HOM05D001295 ORTHO05D005319 6.9e-29 131.0 118 61.0
C04p04470 Brassica napus HOM05D001295 ORTHO05D005319 6.9e-29 131.0 118 61.0
BcaB02g08938 Brassica carinata HOM05D001295 ORTHO05D005319 1.5e-28 129.8 119 60.5
Aa31LG1G25200 Aethionema arabicum HOM05D001295 ORTHO05D005319 5.8e-28 127.9 116 60.3
C01p44730 Brassica napus HOM05D001295 ORTHO05D005319 9.9e-28 127.1 138 52.2
BolC4t22080H Brassica oleracea HOM05D001295 ORTHO05D005319 1.3e-27 126.7 118 59.3
THA.LOC104803837 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 1.1e-21 107.1 149 46.3
A09p42860 Brassica napus HOM05D001295 ORTHO05D005319 9.0e-21 104.0 101 55.4
Manes.11G126000 Manihot esculenta HOM05D001295 ORTHO05D005319 1.6e-17 93.2 133 39.1
COL.COLO4_09274 Corchorus olitorius HOM05D001295 ORTHO05D005319 2.3e-16 89.4 126 38.9
Thecc.04G173300 Theobroma cacao HOM05D001295 ORTHO05D005319 2.3e-16 89.4 131 38.9
Gohir.D02G111400 Gossypium hirsutum HOM05D001295 ORTHO05D005319 6.7e-16 87.8 131 39.7
Gohir.A02G093300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.5e-15 86.7 131 38.9
Prupe.1G199500 Prunus persica HOM05D001295 ORTHO05D005319 2.5e-15 85.9 121 45.5
VMungo1080G0958 Vigna mungo HOM05D001295 ORTHO05D005319 3.3e-15 85.5 128 42.2
Gorai.005G126300 Gossypium raimondii HOM05D001295 ORTHO05D005319 4.3e-15 85.1 131 38.2
Potri.007G132100 Populus trichocarpa HOM05D001295 ORTHO05D005319 3.7e-14 82.0 129 38.8
Hund12401 Selenicereus undatus HOM05D001295 ORTHO05D005319 4.8e-14 81.6 129 41.9
QL10p051312 Quercus lobata HOM05D001295 ORTHO05D005319 8.2e-14 80.9 124 40.3
QL10p051666 Quercus lobata HOM05D001295 ORTHO05D005319 8.2e-14 80.9 124 41.1
Medtr2g099125 Medicago truncatula HOM05D001295 ORTHO05D005319 2.4e-13 79.3 126 42.9
Dinv05087 Davidia involucrata HOM05D001295 ORTHO05D005319 1.2e-12 77.0 131 38.2
Phvul.005G154600 Phaseolus vulgaris HOM05D001295 ORTHO05D005319 1.5e-12 76.6 128 40.6
GSVIVG01004102001 Vitis vinifera HOM05D001295 ORTHO05D005319 1.5e-12 76.6 128 39.1
Lj3g0016601 Lotus japonicus HOM05D001295 ORTHO05D005319 2.0e-12 76.3 125 40.0
Atru.chr4.1272 Acer truncatum HOM05D001295 ORTHO05D005319 3.4e-12 75.5 135 39.3
Cfa015203 Carpinus fangiana HOM05D001295 ORTHO05D005319 4.5e-12 75.1 124 40.3
HanXRQChr13g0419451 Helianthus annuus HOM05D001295 ORTHO05D005319 4.5e-12 75.1 128 35.9
SalBow5G4879 Salvia bowleyana HOM05D001295 ORTHO05D005319 4.5e-12 75.1 130 35.4
AUR62002356 Chenopodium quinoa HOM05D001295 ORTHO05D005319 1.3e-11 73.6 134 37.3
Psat5g290520 Pisum sativum HOM05D001295 ORTHO05D005319 1.3e-11 73.6 130 38.5
TPR.G6512 Trifolium pratense HOM05D001295 ORTHO05D005319 1.3e-11 73.6 130 40.8
EL10Ac3g06020 Beta vulgaris HOM05D001295 ORTHO05D005319 2.2e-11 72.8 120 39.2
CiPaw.01G095500 Carya illinoinensis HOM05D001295 ORTHO05D005319 2.2e-11 72.8 120 38.3
Ciclev10021418m.g Citrus clementina HOM05D001295 ORTHO05D005319 2.2e-11 72.8 133 35.3
Cc03_g12290 Coffea canephora HOM05D001295 ORTHO05D005319 2.9e-11 72.4 129 38.0
Haze_01445 Corylus avellana HOM05D001295 ORTHO05D005319 2.9e-11 72.4 123 39.8
Lsat_1_v5_gn_3_110661 Lactuca sativa HOM05D001295 ORTHO05D005319 2.9e-11 72.4 126 38.1
SalBow8G2942 Salvia bowleyana HOM05D001295 ORTHO05D005319 2.9e-11 72.4 130 34.6
arahy.Tifrunner.gnm1.ann1.CA0DYB Arachis hypogaea HOM05D001295 ORTHO05D005319 3.8e-11 72.0 125 41.6
MD04G1046100 Malus domestica HOM05D001295 ORTHO05D005319 3.8e-11 72.0 126 40.5
ClCG06G001010 Citrullus lanatus HOM05D001295 ORTHO05D005319 5.0e-11 71.6 124 36.3
PGSC0003DMG400026920 Solanum tuberosum HOM05D001295 ORTHO05D005319 6.5e-11 71.2 133 37.6
Glyma.15G028500 Glycine max HOM05D001295 ORTHO05D005319 8.4e-11 70.9 129 38.0
Nitab4.5_0002553g0060 Nicotiana tabacum HOM05D001295 ORTHO05D005319 8.4e-11 70.9 131 37.4
PGR142G2463 Punica granatum HOM05D001295 ORTHO05D005319 8.4e-11 70.9 131 35.9
Sabra07G0119200 Salix brachista HOM05D001295 ORTHO05D005319 8.4e-11 70.9 130 36.2
Sopen06g029480 Solanum pennellii HOM05D001295 ORTHO05D005319 8.4e-11 70.9 130 36.9
Ca_01246_v3 Cicer arietinum L. HOM05D001295 ORTHO05D005319 1.1e-10 70.5 130 40.0
Lj3C135G1 Lonicera japonica HOM05D001295 ORTHO05D005319 1.4e-10 70.1 126 35.7
arahy.Tifrunner.gnm1.ann1.1HI5HP Arachis hypogaea HOM05D001295 ORTHO05D005319 1.9e-10 69.7 124 41.1
arahy.Tifrunner.gnm1.ann1.982DXJ Arachis hypogaea HOM05D001295 ORTHO05D005319 1.9e-10 69.7 124 41.1
BolC2t06464H Brassica oleracea HOM05D001295 ORTHO05D005319 2.5e-10 69.3 116 41.4
AUR62023829 Chenopodium quinoa HOM05D001295 ORTHO05D005319 2.5e-10 69.3 132 35.6
COL.COLO4_21796 Corchorus olitorius HOM05D001295 ORTHO05D005319 7.2e-10 67.8 124 38.7
DCAR_028425 Daucus carota HOM05D001295 ORTHO05D005319 9.3e-10 67.4 131 37.4
CAN.G65.159 Capsicum annuum HOM05D001295 ORTHO05D005319 1.2e-09 67.0 133 36.1
Solyc06g073130.4 Solanum lycopersicum HOM05D001295 ORTHO05D005319 1.2e-09 67.0 133 36.1
PSO017G5265 Papaver somniferum HOM05D001295 ORTHO05D005319 1.6e-09 66.6 117 36.8
Sabra07G0107500 Salix brachista HOM05D001295 ORTHO05D005319 1.6e-09 66.6 127 33.1
Sabra07G0119300 Salix brachista HOM05D001295 ORTHO05D005319 2.1e-09 66.2 127 33.1
Sed0017723 Sechium edule HOM05D001295 ORTHO05D005319 2.1e-09 66.2 125 34.4
TWI15G0408 Tripterygium wilfordii HOM05D001295 ORTHO05D005319 2.7e-09 65.9 138 34.1
Actinidia34573 Actinidia chinensis HOM05D001295 ORTHO05D005319 3.5e-09 65.5 130 33.1
Sc21g0002910 Simmondsia chinensis HOM05D001295 ORTHO05D005319 3.5e-09 65.5 128 32.0
SGA_v2.0_scaffold12G06175 Striga asiatica HOM05D001295 ORTHO05D005319 6.1e-09 64.7 129 35.7
ATR0743G262 Amborella trichopoda HOM05D001295 ORTHO05D005319 7.9e-09 64.3 129 37.2
PSO837G0039 Papaver somniferum HOM05D001295 ORTHO05D005319 1.0e-08 63.9 119 36.1
Sabra07G0119100 Salix brachista HOM05D001295 ORTHO05D005319 1.0e-08 63.9 130 33.1
Aqoxy5G00377 Aquilegia oxysepala HOM05D001295 ORTHO05D005319 1.8e-08 63.2 129 31.8
Peaxi162Scf00180g00045 Petunia axillaris HOM05D001295 ORTHO05D005319 2.3e-08 62.8 130 36.2
vmacro00675 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 3.9e-08 62.0 140 30.0
Lalb_Chr22g0352051 Lupinus albus HOM05D001295 ORTHO05D005319 6.7e-08 61.2 117 36.8
MSTRG.4291 Avicennia marina HOM05D001295 ORTHO05D005319 1.1e-07 60.5 129 34.9
HPP92_007597 Vanilla planifolia HOM05D001295 ORTHO05D005319 3.3e-07 58.9 127 34.6
Eucgr.H00340 Eucalyptus grandis HOM05D001295 ORTHO05D005319 9.7e-07 57.4 130 33.1
Duzib212G0222 Durio zibethinus HOM05D001295 ORTHO05D005319 1.6e-06 56.6 136 33.1
Thecc.04G173200 Theobroma cacao HOM05D001295 ORTHO05D005319 3.7e-06 55.5 130 32.3
CSS0006680 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 4.8e-06 55.1 106 34.9
CSS0045865 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 4.8e-06 55.1 106 34.9
Manes.04G047700 Manihot esculenta HOM05D001295 ORTHO05D005319 6.3e-06 54.7 128 32.8


User provided reference genes

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