Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G36080 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 8.8e-230 800.0 435 100.0
AT2G38780 Arabidopsis thaliana HOM05D005646 ORTHO05D006828 1.4e-206 723.0 459 86.9
Carub.0004s2080 Capsella rubella HOM05D005646 ORTHO05D006828 3.4e-197 691.8 436 83.7
Sp4g21170 Schrenkiella parvula HOM05D005646 ORTHO05D006828 1.0e-185 653.7 442 82.4
CARHR133490 Cardamine hirsuta HOM05D005646 ORTHO05D006828 2.9e-180 635.6 438 77.6
A03p21590 Brassica napus HOM05D005646 ORTHO05D006828 3.9e-177 625.2 442 78.3
BraA03t11395Z Brassica rapa HOM05D005646 ORTHO05D006828 3.6e-175 618.6 461 75.7
BolC3t14946H Brassica oleracea HOM05D005646 ORTHO05D006828 1.5e-168 596.7 461 74.0
C03p25580 Brassica napus HOM05D005646 ORTHO05D006828 2.4e-163 579.3 398 80.2
Aa31LG5G20900 Aethionema arabicum HOM05D005646 ORTHO05D006828 5.8e-157 558.1 480 67.1
Thhalv10016593m.g Eutrema salsugineum HOM05D005646 ORTHO05D006828 1.0e-153 547.4 398 76.9
THA.LOC104824183 Tarenaya hassleriana HOM05D005646 ORTHO05D006828 2.3e-145 519.6 456 64.0
Ciclev10031582m.g Citrus clementina HOM05D005646 ORTHO05D006828 2.5e-112 409.8 445 56.6
Manes.11G002900 Manihot esculenta HOM05D005646 ORTHO05D006828 2.9e-108 396.4 470 50.0
Gohir.D10G253200 Gossypium hirsutum HOM05D005646 ORTHO05D006828 5.0e-108 395.6 442 51.4
Gorai.011G293500 Gossypium raimondii HOM05D005646 ORTHO05D006828 1.9e-107 393.7 442 50.9
COL.COLO4_33459 Corchorus olitorius HOM05D005646 ORTHO05D006828 6.1e-106 388.7 459 49.9
CANSAT54G2531 Cannabis sativa HOM05D005646 ORTHO05D006828 1.4e-105 387.5 440 51.6
Gohir.A10G241000 Gossypium hirsutum HOM05D005646 ORTHO05D006828 3.0e-105 386.3 435 51.3
Solyc01g068470.4 Solanum lycopersicum HOM05D005646 ORTHO05D006828 5.1e-105 385.6 421 49.2
Dinv32048 Davidia involucrata HOM05D005646 ORTHO05D006828 6.7e-105 385.2 408 52.2
Lalb_Chr03g0025471 Lupinus albus HOM05D005646 ORTHO05D006828 1.1e-104 384.4 412 54.9
Sabra01G0018200 Salix brachista HOM05D005646 ORTHO05D000112 1.1e-104 384.4 457 51.0
Potri.001G024200 Populus trichocarpa HOM05D005646 ORTHO05D006828 1.5e-104 384.0 463 50.1
arahy.Tifrunner.gnm1.ann1.HJ7TPY Arachis hypogaea HOM05D005646 ORTHO05D006828 2.6e-104 383.3 406 56.2
Thecc.10G006200 Theobroma cacao HOM05D005646 ORTHO05D006828 1.3e-103 380.9 425 50.4
Peaxi162Scf00309g00328 Petunia axillaris HOM05D005646 ORTHO05D006828 3.7e-103 379.4 421 51.1
Duzib128G0351 Durio zibethinus HOM05D005646 ORTHO05D006828 4.8e-103 379.0 408 51.7
Nitab4.5_0000316g0120 Nicotiana tabacum HOM05D005646 ORTHO05D006828 4.8e-103 379.0 412 49.5
Eucgr.J01194 Eucalyptus grandis HOM05D005646 ORTHO05D006828 1.1e-102 377.9 432 49.8
QL04p013757 Quercus lobata HOM05D005646 ORTHO05D006828 2.4e-102 376.7 478 48.7
ClCG01G007660 Citrullus lanatus HOM05D005646 ORTHO05D006828 7.0e-102 375.2 476 48.7
GSVIVG01000839001 Vitis vinifera HOM05D005646 ORTHO05D006828 7.0e-102 375.2 451 48.3
CsaV3_5G024710 Cucumis sativus L. HOM05D005646 ORTHO05D006828 9.1e-102 374.8 474 49.2
SalBow5G2332 Salvia bowleyana HOM05D005646 ORTHO05D006828 1.5e-101 374.0 414 52.9
CAN.G1571.4 Capsicum annuum HOM05D005646 ORTHO05D006828 2.0e-101 373.6 402 50.2
Cc02_g29140 Coffea canephora HOM05D005646 ORTHO05D006828 2.0e-101 373.6 411 50.6
Sopen01g030430 Solanum pennellii HOM05D005646 ORTHO05D006828 2.0e-101 373.6 443 46.7
MD02G1293900 Malus domestica HOM05D005646 ORTHO05D006828 7.7e-101 371.7 491 47.9
Ca_20909_v3 Cicer arietinum L. HOM05D005646 ORTHO05D006828 1.0e-100 371.3 458 47.4
PGR142G3067 Punica granatum HOM05D005646 ORTHO05D006828 1.3e-100 370.9 416 52.9
Hma1.2p1_0902F.1_g234850 Hydrangea macrophylla HOM05D005646 ORTHO05D006828 1.7e-100 370.5 401 51.9
CiPaw.13G011000 Carya illinoinensis HOM05D005646 ORTHO05D006828 3.8e-100 369.4 473 48.8
MELO3C005130.2 Cucumis melo HOM05D005646 ORTHO05D006828 5.0e-100 369.0 469 49.7
Medtr4g071010 Medicago truncatula HOM05D005646 ORTHO05D006828 6.5e-100 368.6 445 52.8
Sed0017230 Sechium edule HOM05D005646 ORTHO05D006828 6.5e-100 368.6 394 52.3
Atru.chr11.2492 Acer truncatum HOM05D005646 ORTHO05D006828 8.5e-100 368.2 478 45.8
AUR62032557 Chenopodium quinoa HOM05D005646 ORTHO05D006828 1.1e-99 367.9 330 56.4
arahy.Tifrunner.gnm1.ann1.2P0PPD Arachis hypogaea HOM05D005646 ORTHO05D006828 1.9e-99 367.1 392 55.4
Lsat_1_v5_gn_4_30541 Lactuca sativa HOM05D005646 ORTHO05D006828 4.2e-99 365.9 434 49.1
TWI63G1320 Tripterygium wilfordii HOM05D005646 ORTHO05D006828 9.4e-99 364.8 449 50.6
AUR62031673 Chenopodium quinoa HOM05D005646 ORTHO05D006828 1.6e-98 364.0 330 56.1
CSS0034883 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 2.1e-98 363.6 434 47.2
Atru.chr11.2464 Acer truncatum HOM05D005646 ORTHO05D006828 2.7e-98 363.2 409 50.4
EL10Ac2g02850 Beta vulgaris HOM05D005646 ORTHO05D006828 2.7e-98 363.2 307 57.7
Lj3g0019487 Lotus japonicus HOM05D005646 ORTHO05D006828 4.7e-98 362.5 458 48.5
MBI19_g40603_MAGBIO Magnolia biondii HOM05D005646 ORTHO05D006828 6.1e-98 362.1 404 52.5
Ah.10g030810 Amaranthus hybridus HOM05D005646 ORTHO05D006828 8.0e-98 361.7 322 56.2
CSS0050243 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 8.0e-98 361.7 434 47.5
HanXRQChr16g0525351 Helianthus annuus HOM05D005646 ORTHO05D006828 1.8e-97 360.5 378 52.1
Glyma.11G113800 Glycine max HOM05D005646 ORTHO05D006828 3.0e-97 359.8 395 52.4
Hund13332 Selenicereus undatus HOM05D005646 ORTHO05D006828 5.2e-97 359.0 297 59.6
VMungo1127G2196 Vigna mungo HOM05D005646 ORTHO05D006828 1.5e-96 357.5 444 48.9
AL4G20430 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 3.3e-96 356.3 333 65.2
Sc17g0003830 Simmondsia chinensis HOM05D005646 ORTHO05D006828 7.4e-96 355.1 432 48.6
MSTRG.20533 Avicennia marina HOM05D005646 ORTHO05D006828 9.7e-96 354.8 419 49.6
DCAR_022352 Daucus carota HOM05D005646 ORTHO05D006828 9.7e-96 354.8 412 49.0
FAN18G3275 Fragaria x ananassa HOM05D005646 ORTHO05D006828 1.7e-95 354.0 436 48.9
FAN13G1025 Fragaria x ananassa HOM05D005646 ORTHO05D006828 3.7e-95 352.8 435 49.0
FvH4_5g29000 Fragaria vesca HOM05D005646 ORTHO05D006828 4.8e-95 352.4 436 48.6
ECA234G1046 Erigeron canadensis HOM05D005646 ORTHO05D006828 6.3e-95 352.1 378 49.5
Lj9A646T48 Lonicera japonica HOM05D005646 ORTHO05D006828 2.4e-94 350.1 315 57.5
TPR.G30507 Trifolium pratense HOM05D005646 ORTHO05D006828 3.1e-94 349.7 433 47.3
Migut.B01206 Erythranthe guttata HOM05D005646 ORTHO05D006828 9.1e-94 348.2 441 46.3
RcHm_v2.0_Chr7g0221681 Rosa chinensis HOM05D005646 ORTHO05D006828 1.2e-93 347.8 322 56.5
ATR0217G018 Amborella trichopoda HOM05D005646 ORTHO05D006828 2.0e-93 347.1 399 48.6
SGA_v2.0_scaffold249G44948 Striga asiatica HOM05D005646 ORTHO05D006828 3.5e-93 346.3 517 43.9
Cpa.g.sc197.4 Carica papaya HOM05D005646 ORTHO05D006828 5.9e-93 345.5 389 53.7
FAN08G2254 Fragaria x ananassa HOM05D005646 ORTHO05D006828 5.9e-93 345.5 433 48.5
CDE08G1053 Ceratophyllum demersum HOM05D005646 ORTHO05D006828 7.2e-91 338.6 437 47.1
Aqoxy1G00222 Aquilegia oxysepala HOM05D005646 ORTHO05D006828 2.3e-89 333.6 431 45.7
PSO341G0002 Papaver somniferum HOM05D005646 ORTHO05D006828 5.7e-88 328.9 298 54.4
SalBow5G2661 Salvia bowleyana HOM05D005646 ORTHO05D006828 2.2e-87 327.0 413 49.2
Haze_03084 Corylus avellana HOM05D005646 ORTHO05D006828 7.0e-86 322.0 392 50.3
Actinidia19445 Actinidia chinensis HOM05D005646 ORTHO05D006828 2.7e-85 320.1 326 51.2
PSO063G6839 Papaver somniferum HOM05D005646 ORTHO05D006828 5.9e-85 318.9 435 43.0
Prupe.2G029800 Prunus persica HOM05D005646 ORTHO05D006828 1.9e-83 313.9 473 43.6
unitig_746.g26627 Utricularia gibba HOM05D005646 ORTHO05D006828 2.5e-83 313.5 307 53.7
Nitab4.5_0013777g0020 Nicotiana tabacum HOM05D005646 ORTHO05D006828 5.5e-83 312.4 406 43.6
SEGI_25656 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 9.4e-83 311.6 458 42.8
Nn7g36491 Nelumbo nucifera HOM05D005646 ORTHO05D006828 3.0e-81 306.6 306 52.9
HPP92_001013 Vanilla planifolia HOM05D005646 ORTHO05D006828 1.5e-80 304.3 323 49.5
TAR053G0001 Trochodendron aralioides HOM05D005646 ORTHO05D006828 3.4e-72 276.6 450 41.3
Mapoly0066s0082 Marchantia polymorpha HOM05D005646 ORTHO05D006828 7.0e-70 268.9 293 51.9
Rhsim07G0062900 Rhododendron simsii HOM05D005646 ORTHO05D006828 2.9e-68 263.5 258 51.2
vmacro13731 Vaccinium macrocarpon HOM05D005646 ORTHO05D006828 2.9e-68 263.5 276 50.4
SMO145G0178 Selaginella moellendorffii HOM05D005646 ORTHO05D006828 1.3e-63 248.1 296 44.6
Dinv31492 Davidia involucrata HOM05D005646 ORTHO05D006828 2.2e-63 247.3 320 46.6
Zm00001eb347150 Zea mays HOM05D005646 ORTHO05D006828 1.9e-62 244.2 298 43.0
Pp3c21_7940 Physcomitrium patens HOM05D005646 ORTHO05D006828 7.0e-62 242.3 373 41.0
Psat7g183120 Pisum sativum HOM05D005646 ORTHO05D006828 1.6e-61 241.1 312 46.2
AagrBONN_evm.TU.Sc2ySwM_228.261 Anthoceros agrestis HOM05D005646 ORTHO05D006828 6.6e-60 235.7 366 38.5
Phvul.011G041800 Phaseolus vulgaris HOM05D005646 ORTHO05D006828 6.2e-58 229.2 332 45.5
Sc15g0003140 Simmondsia chinensis HOM05D005646 ORTHO05D006828 7.1e-54 215.7 284 41.9
Os05g0381500 Oryza sativa ssp. japonica HOM05D005646 ORTHO05D006828 1.1e-49 201.8 203 50.2
AL4G20290 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 6.8e-49 199.1 125 80.8
GSVIVG01000664001 Vitis vinifera HOM05D005646 ORTHO05D006828 4.1e-46 189.9 174 59.8
RcHm_v2.0_Chr4g0400611 Rosa chinensis HOM05D005646 ORTHO05D006828 2.4e-41 174.1 165 53.9
RcHm_v2.0_Chr2g0113191 Rosa chinensis HOM05D005646 ORTHO05D006828 3.4e-40 170.2 208 46.2
CBR_g29393 Chara braunii HOM05D005646 ORTHO05D006828 5.8e-40 169.5 218 39.9
Cre13.g607900 Chlamydomonas reinhardtii HOM05D005646 ORTHO05D006828 5.4e-38 162.9 230 38.7
PGSC0003DMG400000847 Solanum tuberosum HOM05D005646 ORTHO05D006828 1.6e-34 151.4 111 63.1
CARHR125840 Cardamine hirsuta HOM05D005646 ORTHO05D006828 8.4e-31 139.0 134 59.0
Glyma.12G039666 Glycine max HOM05D005646 ORTHO05D006828 3.2e-30 137.1 146 50.0
Glyma.18G124100 Glycine max HOM05D005646 ORTHO05D006828 5.4e-30 136.3 124 54.8
RcHm_v2.0_Chr2g0154951 Rosa chinensis HOM05D005646 ORTHO05D006828 2.3e-28 131.0 118 56.8
PRCOL_00006924 Prasinoderma coloniale HOM05D005646 ORTHO05D006828 1.3e-26 125.2 234 34.2
PSO017G4843 Papaver somniferum HOM05D005646 ORTHO05D006828 2.8e-26 124.0 129 48.1
SalBow1G3971 Salvia bowleyana HOM05D005646 ORTHO05D006828 2.4e-25 120.9 206 38.3
SEGI_07819 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 1.3e-23 115.2 126 53.2
SEGI_35855 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 1.3e-23 115.2 126 53.2
RcHm_v2.0_Chr4g0400621 Rosa chinensis HOM05D005646 ORTHO05D006828 2.4e-22 110.9 87 60.9
arahy.Tifrunner.gnm1.ann1.7I4JN8 Arachis hypogaea HOM05D005646 ORTHO05D006828 2.5e-19 100.9 62 74.2
COL.COLO4_25675 Corchorus olitorius HOM05D005646 ORTHO05D006828 8.4e-15 85.9 64 57.8
arahy.Tifrunner.gnm1.ann1.B52RT5 Arachis hypogaea HOM05D005646 ORTHO05D006828 3.5e-13 80.5 52 69.2
MCO02G103 Micromonas commoda HOM05D005646 ORTHO05D006828 8.7e-12 75.9 105 34.3
RcHm_v2.0_Chr4g0400631 Rosa chinensis HOM05D005646 ORTHO05D006828 2.1e-10 71.2 46 69.6
PGSC0003DMG400000846 Solanum tuberosum HOM05D005646 ORTHO05D006828 1.8e-09 68.2 70 44.3
RcHm_v2.0_Chr1g0326961 Rosa chinensis HOM05D005646 ORTHO05D006828 2.4e-09 67.8 46 65.2
Glyma.12G039732 Glycine max HOM05D005646 ORTHO05D006828 3.8e-07 60.5 125 40.0


User provided reference genes

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