Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G35860 Arabidopsis lyrata HOM05D006830 ORTHO05D008119 2.4e-111 406.8 484 100.0
AT2G38580 Arabidopsis thaliana HOM05D006830 ORTHO05D008119 4.2e-100 369.4 484 95.0
Carub.0004s2057 Capsella rubella HOM05D006830 ORTHO05D008119 7.8e-78 295.4 529 75.8
Thhalv10016585m.g Eutrema salsugineum HOM05D006830 ORTHO05D008119 2.8e-75 287.0 467 76.9
Sp4g20920 Schrenkiella parvula HOM05D006830 ORTHO05D008119 5.8e-73 279.3 467 73.2
CARHR133260 Cardamine hirsuta HOM05D006830 ORTHO05D008119 2.2e-72 277.3 458 72.9
BcaB01g03674 Brassica carinata HOM05D006830 ORTHO05D008119 1.7e-64 251.1 166 82.5
A03p21400 Brassica napus HOM05D006830 ORTHO05D008119 8.4e-64 248.8 172 80.8
C03p25270 Brassica napus HOM05D006830 ORTHO05D008119 1.1e-63 248.4 172 80.2
BolC3t14921H Brassica oleracea HOM05D006830 ORTHO05D008119 1.1e-63 248.4 172 80.2
BraA03t11375Z Brassica rapa HOM05D006830 ORTHO05D008119 1.9e-63 247.7 172 80.2
BcaC01g05528 Brassica carinata HOM05D006830 ORTHO05D008119 4.7e-59 233.0 164 79.3
C03p25310 Brassica napus HOM05D006830 ORTHO05D008119 1.2e-49 201.8 166 69.9
THA.LOC104806205 Tarenaya hassleriana HOM05D006830 ORTHO05D008119 2.1e-35 154.5 186 54.8
Cpa.g.sc72.63 Carica papaya HOM05D006830 ORTHO05D008119 1.9e-28 131.3 181 50.3
Potri.016G139000 Populus trichocarpa HOM05D006830 ORTHO05D008119 3.2e-23 114.0 163 50.9
Sabra04G0154900 Salix brachista HOM05D006830 ORTHO05D008119 3.2e-23 114.0 160 49.4
TWI77G0580 Tripterygium wilfordii HOM05D006830 ORTHO05D008119 4.2e-23 113.6 191 44.0
Manes.08G169600 Manihot esculenta HOM05D006830 ORTHO05D008119 5.1e-21 106.7 170 47.1
Eucgr.A00784 Eucalyptus grandis HOM05D006830 ORTHO05D008119 6.7e-21 106.3 191 42.9
MD12G1191100 Malus domestica HOM05D006830 ORTHO05D008119 6.7e-21 106.3 186 40.9
Atru.chr8.80 Acer truncatum HOM05D006830 ORTHO05D008119 8.8e-21 105.9 185 44.9
Potri.006G110400 Populus trichocarpa HOM05D006830 ORTHO05D008119 1.1e-20 105.5 163 48.5
Gorai.006G236000 Gossypium raimondii HOM05D006830 ORTHO05D008119 2.2e-19 101.3 174 43.7
Gohir.D09G215500 Gossypium hirsutum HOM05D006830 ORTHO05D008119 2.8e-19 100.9 174 42.0
PGR031G0539 Punica granatum HOM05D006830 ORTHO05D008119 3.7e-19 100.5 189 43.9
GSVIVG01025871001 Vitis vinifera HOM05D006830 ORTHO05D008119 4.8e-19 100.1 190 37.9
QL07p031724 Quercus lobata HOM05D006830 ORTHO05D008119 8.2e-19 99.4 189 41.3
RcHm_v2.0_Chr3g0460131 Rosa chinensis HOM05D006830 ORTHO05D008119 1.4e-18 98.6 202 39.6
Gohir.A09G213672 Gossypium hirsutum HOM05D006830 ORTHO05D008119 1.8e-18 98.2 174 42.0
Hund19745 Selenicereus undatus HOM05D006830 ORTHO05D008119 1.8e-18 98.2 160 42.5
Thecc.04G149300 Theobroma cacao HOM05D006830 ORTHO05D008119 1.8e-18 98.2 164 45.7
Lj1g0026994 Lotus japonicus HOM05D006830 ORTHO05D008119 2.4e-18 97.8 184 40.8
Duzib268G1795 Durio zibethinus HOM05D006830 ORTHO05D008119 3.1e-18 97.4 179 39.7
Sc20g0007150 Simmondsia chinensis HOM05D006830 ORTHO05D008119 3.1e-18 97.4 174 44.8
Haze_21197 Corylus avellana HOM05D006830 ORTHO05D008119 5.3e-18 96.7 203 40.4
Glyma.09G273000 Glycine max HOM05D006830 ORTHO05D008119 5.3e-18 96.7 192 39.1
Prupe.6G296200 Prunus persica HOM05D006830 ORTHO05D008119 6.9e-18 96.3 179 42.5
TAR636G3618 Trochodendron aralioides HOM05D006830 ORTHO05D008119 6.9e-18 96.3 181 40.9
Duzib151G0823 Durio zibethinus HOM05D006830 ORTHO05D008119 9.1e-18 95.9 169 40.8
FvH4_6g09531 Fragaria vesca HOM05D006830 ORTHO05D008119 1.5e-17 95.1 198 39.4
FAN14G4211 Fragaria x ananassa HOM05D006830 ORTHO05D008119 1.5e-17 95.1 198 39.4
AUR62029792 Chenopodium quinoa HOM05D006830 ORTHO05D008119 3.4e-17 94.0 183 38.8
FAN09G0658 Fragaria x ananassa HOM05D006830 ORTHO05D008119 3.4e-17 94.0 195 40.5
Lalb_Chr01g0023901 Lupinus albus HOM05D006830 ORTHO05D008119 3.4e-17 94.0 175 42.3
FAN05G1111 Fragaria x ananassa HOM05D006830 ORTHO05D008119 5.9e-17 93.2 191 38.7
Medtr7g073700 Medicago truncatula HOM05D006830 ORTHO05D008119 5.9e-17 93.2 181 39.8
arahy.Tifrunner.gnm1.ann1.E2XN58 Arachis hypogaea HOM05D006830 ORTHO05D008119 7.7e-17 92.8 182 40.1
MBI15_g32284_MAGBIO Magnolia biondii HOM05D006830 ORTHO05D008119 7.7e-17 92.8 199 39.7
Cfa017009 Carpinus fangiana HOM05D006830 ORTHO05D008119 1.3e-16 92.0 206 40.3
AUR62006437 Chenopodium quinoa HOM05D006830 ORTHO05D008119 2.2e-16 91.3 183 38.3
TWI74G0093 Tripterygium wilfordii HOM05D006830 ORTHO05D008119 2.2e-16 91.3 190 37.9
Nn5g26811 Nelumbo nucifera HOM05D006830 ORTHO05D008119 2.9e-16 90.9 180 40.6
Hund03691 Selenicereus undatus HOM05D006830 ORTHO05D008119 2.9e-16 90.9 180 39.4
Ah.08g209170 Amaranthus hybridus HOM05D006830 ORTHO05D008119 3.8e-16 90.5 172 38.4
Glyma.18G216100 Glycine max HOM05D006830 ORTHO05D008119 5.0e-16 90.1 177 39.0
Ciclev10011645m.g Citrus clementina HOM05D006830 ORTHO05D008119 6.5e-16 89.7 177 40.7
COL.COLO4_21252 Corchorus olitorius HOM05D006830 ORTHO05D008119 6.5e-16 89.7 179 43.0
arahy.Tifrunner.gnm1.ann1.QV5EPW Arachis hypogaea HOM05D006830 ORTHO05D008119 8.5e-16 89.4 181 39.8
Sed0004389 Sechium edule HOM05D006830 ORTHO05D008119 2.5e-15 87.8 185 38.4
FAN02G1118 Fragaria x ananassa HOM05D006830 ORTHO05D008119 3.2e-15 87.4 215 35.8
Rhsim05G0232400 Rhododendron simsii HOM05D006830 ORTHO05D008119 9.4e-15 85.9 207 35.7
EL10Ac7g17129 Beta vulgaris HOM05D006830 ORTHO05D008119 4.7e-14 83.6 175 37.1
MELO3C009096.2 Cucumis melo HOM05D006830 ORTHO05D008119 4.7e-14 83.6 184 36.4
Lj2A57T75 Lonicera japonica HOM05D006830 ORTHO05D008119 6.1e-14 83.2 201 34.3
Aa31LG5G23390 Aethionema arabicum HOM05D006830 ORTHO05D008119 3.9e-13 80.5 111 50.5
Oeu030099.2 Olea europaea HOM05D006830 ORTHO05D008119 5.1e-13 80.1 200 34.0
BolC3t14925H Brassica oleracea HOM05D006830 ORTHO05D008119 8.8e-13 79.3 43 95.3
TPR.G24307 Trifolium pratense HOM05D006830 ORTHO05D008119 1.5e-12 78.6 186 37.6
Dinv16956 Davidia involucrata HOM05D006830 ORTHO05D008119 3.3e-12 77.4 228 32.0
CSS0029082 Camellia sinensis var. sinensis HOM05D006830 ORTHO05D008119 4.4e-12 77.0 209 30.6
CsaV3_3G032990 Cucumis sativus L. HOM05D006830 ORTHO05D008119 5.7e-12 76.6 184 34.8
ECA248G1589 Erigeron canadensis HOM05D006830 ORTHO05D008119 5.7e-12 76.6 187 36.9
Nitab4.5_0000048g0180 Nicotiana tabacum HOM05D006830 ORTHO05D008119 7.4e-12 76.3 205 32.2
Actinidia29020 Actinidia chinensis HOM05D006830 ORTHO05D008119 9.7e-12 75.9 197 35.0
Peaxi162Scf00732g00253 Petunia axillaris HOM05D006830 ORTHO05D008119 4.8e-11 73.6 199 35.7
Ca_07782_v3 Cicer arietinum L. HOM05D006830 ORTHO05D008119 6.3e-11 73.2 184 36.4
Solyc09g016940.4 Solanum lycopersicum HOM05D006830 ORTHO05D008119 8.2e-11 72.8 199 32.7
Sopen09g010200 Solanum pennellii HOM05D006830 ORTHO05D008119 1.4e-10 72.0 199 32.2
HanXRQChr01g0000521 Helianthus annuus HOM05D006830 ORTHO05D008119 1.8e-10 71.6 202 33.7
Hma1.2p1_0537F.1_g174220 Hydrangea macrophylla HOM05D006830 ORTHO05D008119 4.1e-10 70.5 226 29.2
SGA_v2.0_scaffold85G26596 Striga asiatica HOM05D006830 ORTHO05D008119 5.3e-10 70.1 195 33.3
Oeu026939.4 Olea europaea HOM05D006830 ORTHO05D008119 2.6e-09 67.8 196 34.2
Phvul.008G080600 Phaseolus vulgaris HOM05D006830 ORTHO05D008119 3.5e-09 67.4 153 35.3
Migut.J00020 Erythranthe guttata HOM05D006830 ORTHO05D008119 7.7e-09 66.2 216 33.8
PSO339G2021 Papaver somniferum HOM05D006830 ORTHO05D008119 7.7e-09 66.2 123 39.8
vmacro20384 Vaccinium macrocarpon HOM05D006830 ORTHO05D008119 1.3e-08 65.5 198 34.3
AL4G35410 Arabidopsis lyrata HOM05D039041 ORTHO05D008119 2.9e-08 64.3 46 76.1
AL4G35440 Arabidopsis lyrata HOM05D039041 ORTHO05D008119 2.9e-08 64.3 46 76.1
AL4G35470 Arabidopsis lyrata HOM05D039041 ORTHO05D008119 3.8e-08 63.9 51 70.6
VMungo1383G1745 Vigna mungo HOM05D006830 ORTHO05D008119 5.0e-08 63.5 152 32.9
Nitab4.5_0001876g0080 Nicotiana tabacum HOM05D006830 ORTHO05D008119 6.5e-08 63.2 194 32.5
PSO384G2539 Papaver somniferum HOM05D006830 ORTHO05D008119 8.5e-08 62.8 173 31.8
Cc06_g00270 Coffea canephora HOM05D002857 ORTHO05D008347 1.9e-07 61.6 102 44.1
DCAR_023967 Daucus carota HOM05D006830 ORTHO05D008119 2.5e-07 61.2 223 29.1
MSTRG.18932 Avicennia marina HOM05D006830 ORTHO05D008119 3.2e-07 60.8 62 54.8
CANSAT21G1452 Cannabis sativa HOM05D006830 ORTHO05D008119 5.5e-07 60.1 134 35.1
CANSAT60G0001 Cannabis sativa HOM05D006830 ORTHO05D008119 9.4e-07 59.3 134 35.1
Zm00001eb015900 Zea mays HOM05D006830 ORTHO05D008119 1.6e-06 58.5 67 53.7
ClCG10G022820 Citrullus lanatus HOM05D006830 ORTHO05D008119 4.7e-06 57.0 232 30.2
Lsat_1_v5_gn_5_151701 Lactuca sativa HOM05D006830 ORTHO05D008119 8.0e-06 56.2 75 48.0
HPP92_012541 Vanilla planifolia HOM05D006830 ORTHO05D008119 8.0e-06 56.2 37 78.4
HPP92_012572 Vanilla planifolia HOM05D006830 ORTHO05D008119 8.0e-06 56.2 28 92.9


User provided reference genes

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