Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G35770 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 0.0e+00 1513.0 810 100.0
Carub.0004s2047 Capsella rubella HOM05D003671 ORTHO05D004285 0.0e+00 1396.7 810 91.5
CARHR133180 Cardamine hirsuta HOM05D003671 ORTHO05D004285 0.0e+00 1325.1 810 87.9
Thhalv10016251m.g Eutrema salsugineum HOM05D003671 ORTHO05D004285 0.0e+00 1321.6 820 86.5
Sp4g20820 Schrenkiella parvula HOM05D003671 ORTHO05D004285 0.0e+00 1274.2 792 85.9
Aa31LG5G23820 Aethionema arabicum HOM05D003671 ORTHO05D004285 0.0e+00 1158.7 835 77.5
AT3G51650 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 4.2e-302 1041.2 838 69.2
AT3G51640 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 1.6e-301 1039.3 838 69.9
AL5G32090 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 1.8e-300 1035.8 835 69.8
THA.LOC104806637 Tarenaya hassleriana HOM05D003671 ORTHO05D004285 9.4e-286 986.9 809 69.3
BcaB01g00433 Brassica carinata HOM05D003671 ORTHO05D004285 5.9e-272 941.0 810 67.4
BcaB01g00498 Brassica carinata HOM05D003671 ORTHO05D004285 1.1e-265 920.2 815 66.5
BraA09t39938Z Brassica rapa HOM05D003671 ORTHO05D004285 1.1e-265 920.2 810 66.9
BolC8t50300H Brassica oleracea HOM05D003671 ORTHO05D004285 1.2e-264 916.8 815 66.3
A09p44780 Brassica napus HOM05D003671 ORTHO05D004285 2.9e-263 912.1 799 67.2
C08p26840 Brassica napus HOM05D003671 ORTHO05D004285 6.8e-260 901.0 804 66.3
C08p26830 Brassica napus HOM05D003671 ORTHO05D004285 1.3e-258 896.7 828 65.3
BcaB01g00434 Brassica carinata HOM05D003671 ORTHO05D004285 7.0e-257 891.0 833 64.6
BolC8t50298H Brassica oleracea HOM05D003671 ORTHO05D004285 2.9e-255 885.6 849 64.2
BraA09t39936Z Brassica rapa HOM05D003671 ORTHO05D004285 8.6e-247 857.4 857 62.7
A09p44750 Brassica napus HOM05D003671 ORTHO05D004285 1.8e-244 849.7 854 62.5
Manes.09G116100 Manihot esculenta HOM05D003671 ORTHO05D004285 1.8e-228 796.6 879 57.1
Manes.09G115800 Manihot esculenta HOM05D003671 ORTHO05D004285 6.8e-228 794.7 879 56.5
COL.COLO4_30007 Corchorus olitorius HOM05D003671 ORTHO05D004285 3.2e-225 785.8 883 57.0
Thecc.04G154700 Theobroma cacao HOM05D003671 ORTHO05D004285 4.2e-225 785.4 882 55.6
Cpa.g.sc86.30 Carica papaya HOM05D003671 ORTHO05D004285 6.0e-224 781.6 787 60.7
CARHR161250 Cardamine hirsuta HOM05D003671 ORTHO05D004285 6.6e-223 778.1 733 63.2
Duzib212G0018 Durio zibethinus HOM05D003671 ORTHO05D004285 1.9e-222 776.5 885 55.4
Atru.chr8.2376 Acer truncatum HOM05D003671 ORTHO05D004285 3.6e-221 772.3 874 56.9
Duzib151G0206 Durio zibethinus HOM05D003671 ORTHO05D004285 2.6e-219 766.1 884 55.1
Ciclev10011037m.g Citrus clementina HOM05D003671 ORTHO05D004285 9.9e-219 764.2 876 55.3
Potri.006G107500 Populus trichocarpa HOM05D003671 ORTHO05D004285 1.3e-218 763.8 881 55.2
Prupe.6G290600 Prunus persica HOM05D003671 ORTHO05D004285 8.4e-218 761.1 882 54.0
Cfa017060 Carpinus fangiana HOM05D003671 ORTHO05D004285 9.3e-217 757.7 873 56.4
FAN05G3119 Fragaria x ananassa HOM05D003671 ORTHO05D004285 6.6e-215 751.5 872 52.9
FAN05G5788 Fragaria x ananassa HOM05D003671 ORTHO05D004285 1.9e-214 750.0 872 52.5
RcHm_v2.0_Chr3g0460911 Rosa chinensis HOM05D003671 ORTHO05D004285 9.6e-214 747.7 881 53.7
Dinv25318 Davidia involucrata HOM05D003671 ORTHO05D004285 1.3e-210 737.3 881 52.4
Sabra06G0083600 Salix brachista HOM05D003671 ORTHO05D004285 2.9e-210 736.1 880 54.2
FvH4_6g10170 Fragaria vesca HOM05D003671 ORTHO05D004285 9.3e-209 731.1 872 53.7
FAN14G5445 Fragaria x ananassa HOM05D003671 ORTHO05D004285 7.9e-208 728.0 872 53.4
MD12G1185300 Malus domestica HOM05D003671 ORTHO05D004285 3.9e-207 725.7 878 53.4
TWI77G0322 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 3.7e-205 719.2 870 52.3
CSS0037141 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 2.6e-203 713.0 886 50.7
Gorai.005G122800 Gossypium raimondii HOM05D003671 ORTHO05D004285 4.5e-203 712.2 835 52.8
CSS0036424 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 7.6e-203 711.4 886 50.7
Sabra04G0151200 Salix brachista HOM05D003671 ORTHO05D004285 1.4e-201 707.2 880 53.0
QL07p032733 Quercus lobata HOM05D003671 ORTHO05D004285 1.2e-200 704.1 841 54.8
CiPaw.10G164200 Carya illinoinensis HOM05D003671 ORTHO05D004285 3.5e-200 702.6 840 53.0
Potri.016G133700 Populus trichocarpa HOM05D003671 ORTHO05D004285 2.3e-199 699.9 862 52.0
FAN09G2383 Fragaria x ananassa HOM05D003671 ORTHO05D004285 5.1e-199 698.7 870 52.5
TWI74G1343 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 5.1e-199 698.7 877 50.7
Hma1.2p1_1052F.1_g252340 Hydrangea macrophylla HOM05D003671 ORTHO05D004285 1.9e-198 696.8 881 51.9
Actinidia11522 Actinidia chinensis HOM05D003671 ORTHO05D004285 3.7e-197 692.6 884 49.9
TAR636G0316 Trochodendron aralioides HOM05D003671 ORTHO05D004285 3.7e-197 692.6 888 52.3
Rhsim05G0229100 Rhododendron simsii HOM05D003671 ORTHO05D004285 6.3e-197 691.8 890 50.1
TAR636G3051 Trochodendron aralioides HOM05D003671 ORTHO05D004285 1.1e-196 691.0 888 51.9
Actinidia29047 Actinidia chinensis HOM05D003671 ORTHO05D004285 1.5e-195 687.2 881 50.3
TAR633G2716 Trochodendron aralioides HOM05D003671 ORTHO05D004285 1.5e-195 687.2 888 50.8
Lj3C942T7 Lonicera japonica HOM05D003671 ORTHO05D004285 2.6e-195 686.4 831 53.9
Gohir.A03G087500 Gossypium hirsutum HOM05D003671 ORTHO05D004285 3.4e-195 686.0 836 55.6
FAN02G1273 Fragaria x ananassa HOM05D003671 ORTHO05D004285 2.2e-194 683.3 831 54.2
Dinv11386 Davidia involucrata HOM05D003671 ORTHO05D004285 8.4e-194 681.4 772 55.4
Gohir.A03G088100 Gossypium hirsutum HOM05D003671 ORTHO05D004285 1.9e-193 680.2 835 55.6
TWI53G1222 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 3.2e-193 679.5 865 51.9
Glyma.18G211200 Glycine max HOM05D003671 ORTHO05D004285 7.2e-193 678.3 879 52.4
Lj1g0018847 Lotus japonicus HOM05D003671 ORTHO05D004285 7.2e-193 678.3 872 52.3
PGR004G1797 Punica granatum HOM05D003671 ORTHO05D004285 1.6e-192 677.2 859 50.9
MSTRG.18954 Avicennia marina HOM05D003671 ORTHO05D004285 2.7e-192 676.4 869 51.9
CANSAT35G0504 Cannabis sativa HOM05D003671 ORTHO05D004285 2.7e-192 676.4 876 52.4
Gohir.D02G108300 Gossypium hirsutum HOM05D003671 ORTHO05D004285 4.6e-192 675.6 835 55.8
Eucgr.K01274 Eucalyptus grandis HOM05D003671 ORTHO05D004285 6.1e-192 675.2 861 51.5
Cc06_g00530 Coffea canephora HOM05D003671 ORTHO05D004285 1.0e-191 674.5 873 50.9
Glyma.09G277700 Glycine max HOM05D003671 ORTHO05D004285 1.0e-191 674.5 880 52.7
arahy.Tifrunner.gnm1.ann1.616PIC Arachis hypogaea HOM05D003671 ORTHO05D004285 5.1e-191 672.2 891 51.5
CSS0031435 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 6.7e-191 671.8 886 48.5
Gorai.005G122900 Gossypium raimondii HOM05D003671 ORTHO05D004285 6.7e-191 671.8 835 55.7
arahy.Tifrunner.gnm1.ann1.8XV151 Arachis hypogaea HOM05D003671 ORTHO05D004285 8.7e-191 671.4 891 51.5
CSS0025205 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 3.3e-190 669.5 886 48.4
MD04G1172000 Malus domestica HOM05D003671 ORTHO05D004285 1.3e-189 667.5 881 52.8
vmacro20357 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 2.2e-189 666.8 859 49.8
Glyma.18G212400 Glycine max HOM05D003671 ORTHO05D004285 6.3e-189 665.2 875 52.7
CsaV3_3G033210 Cucumis sativus L. HOM05D003671 ORTHO05D004285 2.4e-188 663.3 887 50.4
Lalb_Chr03g0043701 Lupinus albus HOM05D003671 ORTHO05D004285 3.1e-188 662.9 873 52.2
MELO3C009114.2 Cucumis melo HOM05D003671 ORTHO05D004285 5.3e-188 662.1 887 50.1
Haze_21147 Corylus avellana HOM05D003671 ORTHO05D004285 2.5e-185 653.3 790 54.6
Sed0011007 Sechium edule HOM05D003671 ORTHO05D004285 2.5e-185 653.3 890 49.7
Haze_21142 Corylus avellana HOM05D003671 ORTHO05D004285 7.2e-185 651.7 790 54.4
Glyma.09G277602 Glycine max HOM05D003671 ORTHO05D004285 2.7e-184 649.8 857 52.2
Lalb_Chr01g0023661 Lupinus albus HOM05D003671 ORTHO05D004285 1.4e-183 647.5 863 52.0
Ca_07750_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 1.8e-183 647.1 826 52.8
Phvul.008G084500 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 6.7e-183 645.2 875 51.4
Medtr7g072520 Medicago truncatula HOM05D003671 ORTHO05D004285 7.4e-182 641.7 875 51.2
VMungo1383G1272 Vigna mungo HOM05D003671 ORTHO05D004285 7.4e-182 641.7 840 53.0
Lalb_Chr19g0124051 Lupinus albus HOM05D003671 ORTHO05D004285 1.3e-181 641.0 836 52.4
Psat0s1450g0040 Pisum sativum HOM05D003671 ORTHO05D004285 6.3e-181 638.6 881 50.1
ClCG10G022620 Citrullus lanatus HOM05D003671 ORTHO05D004285 8.2e-181 638.3 889 49.6
Phvul.008G084400 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 8.2e-181 638.3 875 50.7
Ca_07746_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 5.3e-180 635.6 876 50.2
Migut.J00060 Erythranthe guttata HOM05D003671 ORTHO05D004285 5.3e-180 635.6 876 50.0
Nn2g10354 Nelumbo nucifera HOM05D003671 ORTHO05D004285 1.2e-179 634.4 893 48.8
MSTRG.5514 Avicennia marina HOM05D003671 ORTHO05D004285 1.5e-179 634.0 869 49.4
SGA_v2.0_scaffold373G50172 Striga asiatica HOM05D003671 ORTHO05D004285 2.0e-179 633.6 867 51.8
CiPaw.09G218900 Carya illinoinensis HOM05D003671 ORTHO05D004285 4.5e-179 632.5 817 52.0
Medtr7g072590 Medicago truncatula HOM05D003671 ORTHO05D004285 1.7e-178 630.6 825 51.3
MBI15_g31431_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 1.9e-177 627.1 881 49.1
SGA_v2.0_scaffold85G26648 Striga asiatica HOM05D003671 ORTHO05D004285 9.4e-177 624.8 873 48.5
Rhsim04G0122600 Rhododendron simsii HOM05D003671 ORTHO05D004285 2.1e-176 623.6 882 46.5
TPR.G4424 Trifolium pratense HOM05D003671 ORTHO05D004285 3.7e-173 612.8 864 50.3
Oeu026963.1 Olea europaea HOM05D003671 ORTHO05D004285 4.1e-172 609.4 827 50.4
Lalb_Chr07g0190641 Lupinus albus HOM05D003671 ORTHO05D004285 5.3e-172 609.0 865 49.6
Peaxi162Scf00595g00423 Petunia axillaris HOM05D003671 ORTHO05D004285 3.8e-170 602.8 876 48.1
Lj1g0001828 Lotus japonicus HOM05D003671 ORTHO05D004285 4.7e-168 595.9 881 48.5
EL10Ac7g17060 Beta vulgaris HOM05D003671 ORTHO05D004285 8.0e-168 595.1 881 49.5
ECA247G1347 Erigeron canadensis HOM05D003671 ORTHO05D004285 8.0e-168 595.1 842 47.1
Sc07g0005760 Simmondsia chinensis HOM05D003671 ORTHO05D004285 8.0e-168 595.1 874 48.9
Hund03740 Selenicereus undatus HOM05D003671 ORTHO05D004285 1.0e-167 594.7 881 45.2
DCAR_010961 Daucus carota HOM05D003671 ORTHO05D004285 8.2e-165 585.1 832 45.4
Ah.08g209720 Amaranthus hybridus HOM05D003671 ORTHO05D004285 3.1e-164 583.2 845 48.0
AUR62029686 Chenopodium quinoa HOM05D003671 ORTHO05D004285 1.5e-161 574.3 854 48.2
PGSC0003DMG400013061 Solanum tuberosum HOM05D003671 ORTHO05D004285 2.5e-161 573.5 872 48.5
CAN.G15.24 Capsicum annuum HOM05D003671 ORTHO05D004285 3.0e-159 566.6 838 49.5
Nitab4.5_0007794g0010 Nicotiana tabacum HOM05D003671 ORTHO05D004285 2.6e-158 563.5 875 46.5
Sopen09g011320 Solanum pennellii HOM05D003671 ORTHO05D004285 1.7e-157 560.8 868 48.4
Solyc09g018310.4 Solanum lycopersicum HOM05D003671 ORTHO05D004285 2.2e-157 560.5 868 48.2
Nitab4.5_0002348g0020 Nicotiana tabacum HOM05D003671 ORTHO05D004285 3.7e-157 559.7 873 48.1
vmacro08928 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 4.8e-157 559.3 835 44.1
CAN.G604.1 Capsicum annuum HOM05D003671 ORTHO05D004285 3.5e-155 553.1 879 45.6
Nitab4.5_0002204g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 7.7e-155 552.0 843 47.9
Oeu060440.1 Olea europaea HOM05D003671 ORTHO05D004285 1.3e-154 551.2 834 48.9
DCAR_021427 Daucus carota HOM05D003671 ORTHO05D004285 4.4e-150 536.2 847 45.6
Nitab4.5_0000126g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 7.5e-150 535.4 838 48.2
Gohir.D02G108200 Gossypium hirsutum HOM05D003671 ORTHO05D004285 4.9e-149 532.7 732 48.1
Aqoxy2G00724 Aquilegia oxysepala HOM05D003671 ORTHO05D004285 6.1e-144 515.8 882 44.7
SpUn1372_0010 Schrenkiella parvula HOM05D003671 ORTHO05D004285 1.3e-141 508.1 394 74.1
AUR62006358 Chenopodium quinoa HOM05D003671 ORTHO05D004285 9.2e-140 501.9 805 47.1
GSVIVG01030211001 Vitis vinifera HOM05D003671 ORTHO05D004285 1.8e-135 487.6 705 49.5
Psat3g120920 Pisum sativum HOM05D003671 ORTHO05D004285 1.5e-134 484.6 804 46.8
Oeu060446.2 Olea europaea HOM05D003671 ORTHO05D004285 4.1e-132 476.5 900 43.8
PSO339G1890 Papaver somniferum HOM05D003671 ORTHO05D004285 4.7e-128 463.0 878 43.6
PSO384G1707 Papaver somniferum HOM05D003671 ORTHO05D004285 8.1e-128 462.2 878 43.8
unitig_699.g19370 Utricularia gibba HOM05D003671 ORTHO05D004285 2.3e-127 460.7 861 44.6
Lsat_1_v5_gn_8_119680 Lactuca sativa HOM05D003671 ORTHO05D004285 1.3e-125 454.9 684 46.6
MBI03_g38977_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 2.7e-123 447.2 739 46.7
Psat3g121000 Pisum sativum HOM05D003671 ORTHO05D004285 1.4e-116 424.9 732 46.4
TPR.G4425 Trifolium pratense HOM05D003671 ORTHO05D004285 2.9e-109 400.6 760 42.5
HanXRQChr16g0510341 Helianthus annuus HOM05D003671 ORTHO05D004285 1.1e-103 382.1 598 48.8
PSO675G2859 Papaver somniferum HOM05D003671 ORTHO05D004285 4.0e-103 380.2 826 41.2
HanXRQChr16g0510331 Helianthus annuus HOM05D003671 ORTHO05D004285 9.0e-103 379.0 669 45.9
ECA236G1062 Erigeron canadensis HOM05D003671 ORTHO05D004285 5.8e-102 376.3 800 40.1
PSO541G0005 Papaver somniferum HOM05D003671 ORTHO05D004285 9.3e-100 369.0 825 38.4
Sed0014254 Sechium edule HOM05D003671 ORTHO05D004285 3.5e-99 367.1 435 53.3
Zm00001eb406310 Zea mays HOM05D003671 ORTHO05D004285 7.6e-94 349.4 829 38.7
Peaxi162Scf00732g00447 Petunia axillaris HOM05D003671 ORTHO05D004285 3.2e-92 344.0 873 39.1
Zm00001eb163960 Zea mays HOM05D003671 ORTHO05D004285 3.2e-92 344.0 835 37.8
Zm00001eb195220 Zea mays HOM05D003671 ORTHO05D004285 3.9e-90 337.0 839 37.8
CDE07G1826 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 6.7e-90 336.3 847 35.9
HPP92_018092 Vanilla planifolia HOM05D003671 ORTHO05D004285 3.3e-89 334.0 833 37.8
CDE04G0380 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 1.8e-87 328.2 811 35.5
Sp5g10620 Schrenkiella parvula HOM05D003671 ORTHO05D004285 1.3e-85 322.0 294 59.2
Os11g0113200 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 1.0e-77 295.8 864 36.8
Os12g0112600 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 2.9e-77 294.3 864 36.7
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 5.5e-76 290.0 830 35.4
Nn5g26901 Nelumbo nucifera HOM05D003671 ORTHO05D004285 5.0e-69 266.9 631 43.1
ATR0012G011 Amborella trichopoda HOM05D003671 ORTHO05D004285 5.1e-66 256.9 873 34.2
ATR0681G108 Amborella trichopoda HOM05D003671 ORTHO05D004285 7.9e-59 233.0 420 46.4
SEGI_37069 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 8.8e-58 229.6 841 34.4
AagrBONN_evm.TU.Sc2ySwM_344.630 Anthoceros agrestis HOM05D003671 ORTHO05D004285 1.5e-57 228.8 333 43.5
SEGI_23390 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 1.7e-56 225.3 297 47.5
SEGI_27030 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 3.8e-53 214.2 280 47.1
Mapoly0100s0047 Marchantia polymorpha HOM05D003671 ORTHO05D004285 1.1e-52 212.6 341 41.9
CAN.G179.38 Capsicum annuum HOM05D003671 ORTHO05D004285 1.1e-47 196.1 225 50.2
Pp3c12_1780 Physcomitrium patens HOM05D003671 ORTHO05D004285 4.1e-47 194.1 319 41.7
Oeu026958.1 Olea europaea HOM05D003671 ORTHO05D004285 1.3e-45 189.1 480 35.4
SEGI_38845 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 1.4e-42 179.1 276 40.9
SEGI_35920 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 3.5e-38 164.5 161 52.8
Oeu060441.1 Olea europaea HOM05D003671 ORTHO05D004285 1.9e-36 158.7 349 35.0
TPR.G35754 Trifolium pratense HOM05D003671 ORTHO05D004285 2.6e-33 148.3 81 91.4
Haze_23239 Corylus avellana HOM05D003671 ORTHO05D004285 4.1e-31 141.0 262 52.3
MBI03_g10316_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 3.5e-30 137.9 93 77.4
VMungo1383G0904 Vigna mungo HOM05D003671 ORTHO05D004285 3.5e-30 137.9 305 35.4
Sc02g0000840 Simmondsia chinensis HOM05D003671 ORTHO05D004285 1.7e-29 135.6 260 36.9
ATR0681G103 Amborella trichopoda HOM05D003671 ORTHO05D004285 8.3e-08 63.5 85 44.7


User provided reference genes

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