Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G35430 Arabidopsis lyrata HOM05D031911 ORTHO05D031281 3.3e-71 271.6 132 100.0
AL4G35460 Arabidopsis lyrata HOM05D031911 ORTHO05D031281 3.3e-71 271.6 132 100.0
AL4G35270 Arabidopsis lyrata HOM05D019143 ORTHO05D019731 1.0e-08 63.9 65 41.5
CsaV3_7G034530 Cucumis sativus L. HOM05D001583 ORTHO05D001900 2.6e-07 59.3 123 32.5
unitig_32.g11837 Utricularia gibba HOM05D001172 ORTHO05D001128 4.4e-07 58.5 72 36.1
Thecc.08G050600 Theobroma cacao HOM05D018268 ORTHO05D025169 5.7e-07 58.2 81 38.3
CiPaw.08G076500 Carya illinoinensis HOM05D000440 ORTHO05D000295 7.5e-07 57.8 45 55.6
arahy.Tifrunner.gnm1.ann1.G4DYTJ Arachis hypogaea HOM05D008978 ORTHO05D010988 9.7e-07 57.4 105 32.4
Gohir.A06G001200 Gossypium hirsutum HOM05D001172 ORTHO05D001128 9.7e-07 57.4 44 50.0
Potri.001G140900 Populus trichocarpa HOM05D000157 ORTHO05D004871 9.7e-07 57.4 70 41.4
Aqoxy2G03593 Aquilegia oxysepala HOM05D031911 ORTHO05D031281 1.3e-06 57.0 48 47.9
AUR62010177 Chenopodium quinoa HOM05D000440 ORTHO05D000295 1.3e-06 57.0 46 50.0
unitig_26.g9179 Utricularia gibba HOM05D000086 ORTHO05D000431 1.3e-06 57.0 42 54.8
Zm00001eb072750 Zea mays HOM05D000440 ORTHO05D000295 1.3e-06 57.0 46 52.2
Gorai.010G001400 Gossypium raimondii HOM05D001172 ORTHO05D001128 1.7e-06 56.6 44 50.0
VMungo1215G3459 Vigna mungo HOM05D000440 ORTHO05D000295 1.7e-06 56.6 65 41.5
arahy.Tifrunner.gnm1.ann1.7K017H Arachis hypogaea HOM05D008978 ORTHO05D010988 2.2e-06 56.2 105 32.4
AUR62013178 Chenopodium quinoa HOM05D000440 ORTHO05D000295 2.2e-06 56.2 45 51.1
Rhsim12G0213300 Rhododendron simsii HOM05D000157 ORTHO05D000311 2.2e-06 56.2 78 41.0
Manes.02G027200 Manihot esculenta HOM05D015908 ORTHO05D014613 2.8e-06 55.8 48 47.9
CSS0026700 Camellia sinensis var. sinensis HOM05D000157 ORTHO05D001775 3.7e-06 55.5 46 50.0
MELO3C009075.2 Cucumis melo HOM05D000082 ORTHO05D000038 3.7e-06 55.5 45 46.7
CsaV3_7G001950 Cucumis sativus L. HOM05D000082 ORTHO05D000038 3.7e-06 55.5 45 46.7
CsaV3_7G002010 Cucumis sativus L. HOM05D000082 ORTHO05D000038 3.7e-06 55.5 45 46.7
Lsat_1_v5_gn_4_171720 Lactuca sativa HOM05D000157 ORTHO05D004871 3.7e-06 55.5 65 43.1
QL07p047989 Quercus lobata HOM05D000086 ORTHO05D000431 3.7e-06 55.5 80 38.8
Sed0026191 Sechium edule HOM05D000157 ORTHO05D001065 3.7e-06 55.5 106 33.0
Sopen09g002490 Solanum pennellii HOM05D000187 ORTHO05D000230 3.7e-06 55.5 49 42.9
Atru.chr1.3906 Acer truncatum HOM05D000157 ORTHO05D004871 4.8e-06 55.1 66 40.9
MSTRG.15585 Avicennia marina HOM05D001172 ORTHO05D001128 4.8e-06 55.1 83 36.1
Duzib093G0936 Durio zibethinus HOM05D018268 ORTHO05D025169 4.8e-06 55.1 44 47.7
QL12p004859 Quercus lobata HOM05D000157 ORTHO05D004871 4.8e-06 55.1 120 31.7
Sed0010924 Sechium edule HOM05D000157 ORTHO05D000311 4.8e-06 55.1 78 35.9
Thecc.09G321300 Theobroma cacao HOM05D000086 ORTHO05D001065 4.8e-06 55.1 81 38.3
VMungo1127G1390 Vigna mungo HOM05D000157 ORTHO05D001065 4.8e-06 55.1 68 42.6
AL1G33830 Arabidopsis lyrata HOM05D000440 ORTHO05D000295 6.3e-06 54.7 67 46.3
EL10Ac9g22836 Beta vulgaris HOM05D010671 ORTHO05D013417 6.3e-06 54.7 44 52.3
EL10Ac9g22837 Beta vulgaris HOM05D010671 ORTHO05D013417 6.3e-06 54.7 44 52.3
EL10Ac9g22838 Beta vulgaris HOM05D010671 ORTHO05D013417 6.3e-06 54.7 44 52.3
EL10Ac9g22839 Beta vulgaris HOM05D010671 ORTHO05D013417 6.3e-06 54.7 44 52.3
Carub.0001s1841 Capsella rubella HOM05D007117 ORTHO05D000038 6.3e-06 54.7 46 45.7
Carub.0001s2028 Capsella rubella HOM05D000440 ORTHO05D000295 6.3e-06 54.7 67 46.3
Ciclev10027045m.g Citrus clementina HOM05D000440 ORTHO05D000295 6.3e-06 54.7 138 34.1
DCAR_010476 Daucus carota HOM05D000157 ORTHO05D001775 6.3e-06 54.7 46 50.0
Glyma.13G277600 Glycine max HOM05D000157 ORTHO05D001065 6.3e-06 54.7 46 52.2
Gorai.009G191600 Gossypium raimondii HOM05D001172 ORTHO05D001128 6.3e-06 54.7 44 50.0
Lsat_1_v5_gn_7_40280 Lactuca sativa HOM05D000082 ORTHO05D000038 6.3e-06 54.7 43 48.8
MD06G1036300 Malus domestica HOM05D000157 ORTHO05D004871 6.3e-06 54.7 65 40.0
Nn5g30801 Nelumbo nucifera HOM05D001778 ORTHO05D000557 6.3e-06 54.7 85 34.1
SGA_v2.0_scaffold35G14183 Striga asiatica HOM05D000082 ORTHO05D009107 6.3e-06 54.7 57 43.9
SGA_v2.0_scaffold67G22599 Striga asiatica HOM05D000157 ORTHO05D000311 6.3e-06 54.7 80 36.2
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 8.2e-06 54.3 66 39.4
BcaC05g25984 Brassica carinata HOM05D000440 ORTHO05D000295 8.2e-06 54.3 67 46.3
A07p15470 Brassica napus HOM05D000440 ORTHO05D000295 8.2e-06 54.3 67 44.8
C05p19370 Brassica napus HOM05D000440 ORTHO05D000295 8.2e-06 54.3 67 46.3
BolC5t30640H Brassica oleracea HOM05D000440 ORTHO05D000295 8.2e-06 54.3 67 46.3
BraA06t24790Z Brassica rapa HOM05D000440 ORTHO05D000295 8.2e-06 54.3 67 46.3
BraA07t29287Z Brassica rapa HOM05D000440 ORTHO05D000295 8.2e-06 54.3 67 44.8
CANSAT25G0349 Cannabis sativa HOM05D000157 ORTHO05D000311 8.2e-06 54.3 44 52.3
CANSAT54G1141 Cannabis sativa HOM05D000086 ORTHO05D001065 8.2e-06 54.3 58 43.1
Ca_02841_v3 Cicer arietinum L. HOM05D000440 ORTHO05D000295 8.2e-06 54.3 81 34.6
Ciclev10003843m.g Citrus clementina HOM05D000082 ORTHO05D000038 8.2e-06 54.3 59 40.7
ECA234G1156 Erigeron canadensis HOM05D001113 ORTHO05D000968 8.2e-06 54.3 46 50.0
Thhalv10009964m.g Eutrema salsugineum HOM05D000440 ORTHO05D000295 8.2e-06 54.3 67 46.3
HanXRQChr02g0053641 Helianthus annuus HOM05D000354 ORTHO05D000747 8.2e-06 54.3 48 45.8
Medtr2g096350 Medicago truncatula HOM05D000086 ORTHO05D000431 8.2e-06 54.3 63 42.9
TPR.G7140 Trifolium pratense HOM05D000082 ORTHO05D000038 8.2e-06 54.3 48 47.9
Zm00001eb395020 Zea mays HOM05D000440 ORTHO05D000295 8.2e-06 54.3 136 31.6


User provided reference genes

Program Settings