Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G35300 Arabidopsis lyrata HOM05D001122 ORTHO05D001877 1.8e-52 209.1 120 100.0
AL4G35590 Arabidopsis lyrata HOM05D001122 ORTHO05D001877 8.2e-29 130.6 96 80.2
Carub.0004s2034 Capsella rubella HOM05D001122 ORTHO05D001877 1.5e-25 119.8 134 61.9
Sp4g20690 Schrenkiella parvula HOM05D001122 ORTHO05D001877 8.0e-24 114.0 112 61.6
AT2G38370 Arabidopsis thaliana HOM05D001122 ORTHO05D001877 1.7e-21 106.3 96 70.8
Thhalv10016492m.g Eutrema salsugineum HOM05D001122 ORTHO05D001877 1.6e-19 99.8 117 56.4
A03p21230 Brassica napus HOM05D001122 ORTHO05D001877 1.2e-16 90.1 104 61.5
BraA03t11360Z Brassica rapa HOM05D001122 ORTHO05D001877 1.2e-16 90.1 104 61.5
BcaB01g03692 Brassica carinata HOM05D001122 ORTHO05D001877 5.2e-15 84.7 99 56.6
BolC3t14902H Brassica oleracea HOM05D001122 ORTHO05D001877 5.2e-15 84.7 107 57.9
BcaB01g03695 Brassica carinata HOM05D001122 ORTHO05D001877 2.6e-14 82.4 103 59.2
BcaC01g05545 Brassica carinata HOM05D001122 ORTHO05D001877 2.6e-14 82.4 107 57.0
C03p25110 Brassica napus HOM05D001122 ORTHO05D001877 2.6e-14 82.4 107 57.0
BcaC02g07470 Brassica carinata HOM05D001122 ORTHO05D001877 7.5e-14 80.9 86 61.6
C04p66660 Brassica napus HOM05D001122 ORTHO05D001877 7.5e-14 80.9 86 61.6
BolC4t28168H Brassica oleracea HOM05D001122 ORTHO05D001877 7.5e-14 80.9 86 61.6
BraA04t18404Z Brassica rapa HOM05D001122 ORTHO05D001877 3.1e-12 75.5 91 53.8
A04p29360 Brassica napus HOM05D001122 ORTHO05D001877 7.0e-12 74.3 91 54.9
Aa31LG5G24080 Aethionema arabicum HOM05D001122 ORTHO05D001877 2.7e-11 72.4 94 54.3
Thhalv10010401m.g Eutrema salsugineum HOM05D001122 ORTHO05D001877 1.7e-10 69.7 112 47.3
CiPaw.09G218300 Carya illinoinensis HOM05D001122 ORTHO05D001877 2.3e-10 69.3 95 48.4
QL07p032789 Quercus lobata HOM05D001122 ORTHO05D001877 5.0e-10 68.2 89 50.6
Rhsim05G0228900 Rhododendron simsii HOM05D001122 ORTHO05D001877 1.1e-09 67.0 88 51.1
AL96U10050 Arabidopsis lyrata HOM05D001122 ORTHO05D038588 1.5e-09 66.6 55 65.5
Cfa017062 Carpinus fangiana HOM05D001122 ORTHO05D001877 4.2e-09 65.1 88 50.0
Haze_21139 Corylus avellana HOM05D001122 ORTHO05D001877 4.2e-09 65.1 88 50.0
Haze_21145 Corylus avellana HOM05D001122 ORTHO05D001877 4.2e-09 65.1 88 50.0
TPR.G5005 Trifolium pratense HOM05D001122 ORTHO05D001877 5.5e-09 64.7 82 56.1
Actinidia11525 Actinidia chinensis HOM05D001122 ORTHO05D001877 7.2e-09 64.3 88 47.7
CiPaw.10G163900 Carya illinoinensis HOM05D001122 ORTHO05D001877 7.2e-09 64.3 89 49.4
Ciclev10011064m.g Citrus clementina HOM05D001122 ORTHO05D001877 7.2e-09 64.3 71 57.7
THA.LOC104806079 Tarenaya hassleriana HOM05D001122 ORTHO05D001877 7.2e-09 64.3 118 44.1
CSS0040395 Camellia sinensis var. sinensis HOM05D001122 ORTHO05D001877 1.2e-08 63.5 88 50.0
CSS0044199 Camellia sinensis var. sinensis HOM05D001122 ORTHO05D001877 1.2e-08 63.5 88 50.0
CANSAT35G1567 Cannabis sativa HOM05D001122 ORTHO05D001877 2.8e-08 62.4 89 47.2
AUR62006350 Chenopodium quinoa HOM05D001122 ORTHO05D001877 3.6e-08 62.0 68 57.4
AUR62029682 Chenopodium quinoa HOM05D001122 ORTHO05D001877 3.6e-08 62.0 71 54.9
COL.COLO4_30003 Corchorus olitorius HOM05D001122 ORTHO05D001877 3.6e-08 62.0 81 49.4
Glyma.01G131300 Glycine max HOM05D001122 ORTHO05D001877 3.6e-08 62.0 89 50.6
Medtr4g029090 Medicago truncatula HOM05D001122 ORTHO05D001877 3.6e-08 62.0 57 70.2
BcaB01g00493 Brassica carinata HOM05D001122 ORTHO05D001877 4.7e-08 61.6 114 43.9
BolC8t50306H Brassica oleracea HOM05D001122 ORTHO05D001877 4.7e-08 61.6 114 43.9
Phvul.008G086500 Phaseolus vulgaris HOM05D001122 ORTHO05D001877 4.7e-08 61.6 72 55.6
EL10Ac7g17055 Beta vulgaris HOM05D001122 ORTHO05D001877 6.1e-08 61.2 90 47.8
BcaB01g00426 Brassica carinata HOM05D001122 ORTHO05D001877 6.1e-08 61.2 114 45.6
Phvul.010G067400 Phaseolus vulgaris HOM05D001122 ORTHO05D001877 6.1e-08 61.2 65 61.5
Atru.chr8.2373 Acer truncatum HOM05D001122 ORTHO05D001877 8.0e-08 60.8 65 55.4
arahy.Tifrunner.gnm1.ann1.5K0G3N Arachis hypogaea HOM05D001122 ORTHO05D001877 8.0e-08 60.8 89 49.4
arahy.Tifrunner.gnm1.ann1.MH7SIY Arachis hypogaea HOM05D001122 ORTHO05D001877 8.0e-08 60.8 89 49.4
C08p26890 Brassica napus HOM05D001122 ORTHO05D001877 8.0e-08 60.8 110 45.5
Migut.J00063 Erythranthe guttata HOM05D001122 ORTHO05D001877 8.0e-08 60.8 111 42.3
Nn2g11099 Nelumbo nucifera HOM05D001122 ORTHO05D001877 8.0e-08 60.8 89 44.9
CAN.G15.26 Capsicum annuum HOM05D001122 ORTHO05D001877 1.0e-07 60.5 93 47.3
Nitab4.5_0000126g0030 Nicotiana tabacum HOM05D001122 ORTHO05D001877 1.0e-07 60.5 77 50.6
AT3G51720 Arabidopsis thaliana HOM05D001122 ORTHO05D001877 1.4e-07 60.1 110 44.5
Sabra04G0151000 Salix brachista HOM05D001122 ORTHO05D001877 1.4e-07 60.1 81 45.7
Sopen09g015510 Solanum pennellii HOM05D001122 ORTHO05D001877 1.4e-07 60.1 62 58.1
Lj3C942G13 Lonicera japonica HOM05D001122 ORTHO05D000051 1.8e-07 59.7 56 66.1
Manes.09G115600 Manihot esculenta HOM05D001122 ORTHO05D001877 1.8e-07 59.7 105 40.0
TWI74G1328 Tripterygium wilfordii HOM05D001122 ORTHO05D001877 1.8e-07 59.7 89 44.9
VMungo0331G1084 Vigna mungo HOM05D001122 ORTHO05D001877 1.8e-07 59.7 65 60.0
VMungo1383G2320 Vigna mungo HOM05D001122 ORTHO05D001877 1.8e-07 59.7 81 51.9
Hund03744 Selenicereus undatus HOM05D001122 ORTHO05D001877 2.3e-07 59.3 89 43.8
Thecc.04G155100 Theobroma cacao HOM05D001122 ORTHO05D001877 2.3e-07 59.3 81 46.9
Glyma.18G211800 Glycine max HOM05D001122 ORTHO05D001877 3.0e-07 58.9 57 64.9
Lsat_1_v5_gn_5_148221 Lactuca sativa HOM05D001122 ORTHO05D001877 3.0e-07 58.9 93 46.2
Lj1g0026787 Lotus japonicus HOM05D001122 ORTHO05D001877 3.0e-07 58.9 57 63.2
MD04G1171400 Malus domestica HOM05D001122 ORTHO05D001877 3.0e-07 58.9 92 44.6
MD12G1184800 Malus domestica HOM05D001122 ORTHO05D001877 3.0e-07 58.9 92 45.7
Psat7g230000 Pisum sativum HOM05D001122 ORTHO05D001877 3.0e-07 58.9 90 50.0
Potri.016G133300 Populus trichocarpa HOM05D001122 ORTHO05D001877 3.0e-07 58.9 89 42.7
Sabra06G0083500 Salix brachista HOM05D001122 ORTHO05D001877 3.0e-07 58.9 80 46.2
Lj3g0016412 Lotus japonicus HOM05D001122 ORTHO05D001877 4.0e-07 58.5 99 46.5
Glyma.09G277300 Glycine max HOM05D001122 ORTHO05D001877 6.8e-07 57.8 81 46.9
PSO384G5075 Papaver somniferum HOM05D001122 ORTHO05D001877 6.8e-07 57.8 89 43.8
Solyc09g042710.3 Solanum lycopersicum HOM05D001122 ORTHO05D001877 6.8e-07 57.8 62 56.5
Carub.0005s1806 Capsella rubella HOM05D001122 ORTHO05D001877 8.9e-07 57.4 98 45.9
Ca_19776_v3 Cicer arietinum L. HOM05D001122 ORTHO05D001877 8.9e-07 57.4 98 44.9
Dinv11391 Davidia involucrata HOM05D001122 ORTHO05D001877 8.9e-07 57.4 92 45.7
Duzib212G0698 Durio zibethinus HOM05D001122 ORTHO05D001877 1.2e-06 57.0 89 41.6
Glyma.03G037500 Glycine max HOM05D001122 ORTHO05D001877 1.5e-06 56.6 65 56.9
Cpa.g.sc86.25 Carica papaya HOM05D001122 ORTHO05D001877 2.0e-06 56.2 105 41.0
TWI77G0311 Tripterygium wilfordii HOM05D001122 ORTHO05D001877 2.0e-06 56.2 92 43.5
arahy.Tifrunner.gnm1.ann1.P0IKGX Arachis hypogaea HOM05D001122 ORTHO05D001877 2.6e-06 55.8 57 64.9
arahy.Tifrunner.gnm1.ann1.Y8SUHG Arachis hypogaea HOM05D001122 ORTHO05D001877 2.6e-06 55.8 57 64.9
BraA09t39946Z Brassica rapa HOM05D001122 ORTHO05D001877 3.4e-06 55.5 108 42.6
Duzib151G1105 Durio zibethinus HOM05D001122 ORTHO05D001877 3.4e-06 55.5 92 43.5
Lalb_Chr12g0207571 Lupinus albus HOM05D001122 ORTHO05D001877 3.4e-06 55.5 77 54.5
DCAR_015347 Daucus carota HOM05D001122 ORTHO05D001877 4.4e-06 55.1 93 41.9
Dinv25307 Davidia involucrata HOM05D001122 ORTHO05D001877 5.7e-06 54.7 88 44.3
Medtr7g072550 Medicago truncatula HOM05D001122 ORTHO05D001877 5.7e-06 54.7 89 44.9
PGR031G0394 Punica granatum HOM05D001122 ORTHO05D001877 5.7e-06 54.7 59 54.2
A09p44840 Brassica napus HOM05D001122 ORTHO05D001877 7.5e-06 54.3 108 41.7
CARHR161330 Cardamine hirsuta HOM05D001122 ORTHO05D001877 7.5e-06 54.3 96 46.9
HanXRQChr01g0000001 Helianthus annuus HOM05D001122 ORTHO05D001877 7.5e-06 54.3 61 54.1
HanXRQChr10g0298251 Helianthus annuus HOM05D001122 ORTHO05D001877 7.5e-06 54.3 94 41.5
Hma1.2p1_1052F.1_g252360 Hydrangea macrophylla HOM05D001122 ORTHO05D001877 7.5e-06 54.3 88 43.2
BcaC02g10693 Brassica carinata HOM05D001122 ORTHO05D001877 9.8e-06 53.9 110 42.7
C04p26740 Brassica napus HOM05D001122 ORTHO05D001877 9.8e-06 53.9 110 42.7
BolC4t24129H Brassica oleracea HOM05D001122 ORTHO05D001877 9.8e-06 53.9 110 42.7


User provided reference genes

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